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LotjaGi2g1v0093200.1

Overview

Field Value
Gene ID LotjaGi2g1v0093200
Transcript ID LotjaGi2g1v0093200.1
Lotus japonicus genome version Gifu v1.2
Description Wuschel-related homeobox protein; TAIR: AT3G03660.1 WUSCHEL related homeobox 11; Swiss-Prot: sp|Q6X7J3|WOX11_ARATH WUSCHEL-related homeobox 11; TrEMBL-Plants: tr|V7C3M7|V7C3M7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0093200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:29365531..29370612) extracted from Lotus japonicus Gifu genome v1.2.

ATTCCATGTACTAAATTCATTTTACCTAGGTTTCATCACATCACAACTTCAGAAACACATTTTCTTATTTCCTCCACATT GAAACAATGGAAGATCAGGAGGGTGAGTCTCCGGACCCAAACAGTCCGACCCAAGGCTCCTCCTCCTCTGAGTCTCGGAC CGGGCCAGTGAGGTCACGGTGGACGCCTAAGCCAGAACAAATCCTCATACTTGAGTCCATCTTCAACAGCGGCATGGTAA ACCCGCCAAAGGAAGAGACTTTCAGAATAAGAAAGCTTCTTGAGAAATTCGGCACCGTTGGCGATGCTAACGTGTTCTAC TGGTTCCAGAACCGCCGCTCTCGCTCCCGTCGCCGCCAACGCCAGATGCAGGCGTCGGCAGCTCAACATGGCGGTGGTGC AAACCCATTTCCTCAGCACACCTTCAACAACAACATCAACTCTGCAAGTTCTGCTGCTGCTGCCAAAGGTTTTGGTGCTT CATCTTTCACTGTTAATTCTTCTTCACCTTACTTCTCTGGTTCCTCTTCATCATGCGGTGGTGGTAGTGGTGGTGGTTTT CAAGAAGCCTTAGGTGGTAGTTTCTTCTCAGACTCTGCTCAAATGGGTTTCCCAGAAATTGATCACAACTCAGCTGCATC ATCAGTTTTGTATCCTTCTGATCATGCTCAAAATGTGAACTACAACTCAGGTATGTAATTAATTGCACCGATGGGTTGTT TTCCTCAGGTTTTTTATTCAATGAAGATAATTACAATCTTTGTTTTCTTGTATTTCATTGTTATATCAATACTCCCACTA TGCTATGCAATTAATTGCATGGCGGTGTTGTCTTCTTCAAATTTTTCTGTAAAACACTAACCATGAAAAACTTCAAACTT TTATTTTATTTTATTTCATTTTCTTTAATTGATAACTAACTCAAAATTTTAATTACAAGGTATGTCTTATTCTTGTATTT GTTTTTTTAACCACACTACATTTATTTCAATAGGTATTTCTTTGTTTAAGACAGATGATTTCAAGATCTAATCTACTCAT GTATTCTTCTTTTATGCTTGATTTTGTGTTAATTCAACACGTTCTTTAAGGGTTTTTATTTATTCAAACCACATTTACTT CACCATATTTTTTTTTCTTTTCCCATCTCTTTCTGGATGTGGGTCGATTTTCATGAGAATGGTTTTTTTTTTTTCTTTTT TTAATAGCTTGTGACATCTTCCTCAGAATTGTGAACCTAGTAGCATGAAGGAAATTTTAACCTTTGATTTCACTTTTTTA TTGATTATACACAAAATTTTCTGACATTCATTCCTTGTTAAAGGAGGTGGTGGTGTTAAGCTTTGCTTCCATATATACTA AACCACTTATAAAGGCTCGAGGCTAAAAATGAGTGCTAGAATCTAAAATTCTTATGCAAGTGTTATTTGTGTAAAAGTCC TTCTTTTTCGGTTGTTTAGGTTTGGTGTGCCATGTAATAAAGTAAGTAGCAATCTTTTTCATGATTTGACAGTTCCTTTC TGAGATTAATTGATTTGCATGAAAATTCTACTTTCTGGAAAAACATGAGGCTGCTTTTCTGTTGCAGAGTATGTTCTCCC TTTTTATTCGTCATTTCTTTTCTGGGTTTCTTCCGAACTTCTTTACTATGATTTCCAAACCCTAGACCTGTTTTCTCTTG TACTCTATTTGGGTGTATTGTATTATCATTTATATATTTGGTTTTAGAAAATGATTAGTTCCCCCTCATTCCATCCATAC TCACATGAGAGGTAAGATAAAAGAGAGTGTAAAAGATGCGATCGAGAAAAAAAGTAAGAAATTAAATAAGAAGAAAATAT TAGTGAAAATACGGTGAAAAATAGAGATAATATGGATATATATATATATATATAGATATATATATATAGATATATATTTA TATAGATATATATTTATACATCATAGTTGTTTGATTTTTCATAGATAAATTCAATTTGGCGTGTTTGTTTGGAAAATAGG TGAGAATCGCGTGTAGGTTGCATACTTTAGAAGCTATAAATGTGTGTTTCGAAATGAAATAGGGGGTTACCACGTTTTCC GGGCGGATATGTTCTAATCGAAGCTACAATGTGTAATTTTTAAAAAATTTAAGCTATTATCGGTTTTAAAGCGTGGAAGC AACCGATCTTCAATTATTATTTTTGACTTTGTCTATGATGGATCACGAAATTTTTTGTTCATATATTAATAATGACTTGT TTATAAATTATTTTAATTTAACATATATATAAAACATTAATACTACATATTATACTTATAAAATATAAAATATGATTCAT GAGTGGACATTTTAGAATTGTCTTTACTTATTTTAGTTCAATTTACATTGTTCATGTCCTCCTAAACACCGATCAAAAGA AATTAAAGTTGAATTCAAGAAGTCTTGATAAGTACAATGACACCAACAAACACCATTTCGGTGAGATCTATTAAATGTGC ATCTTTCTTAATTTATGAGATCTATTACATATGCATCTTTATGTTCATATTACATATGCATCTTTCTTAATTTGTGAGAT CGTTTATAGTTGATTTTCTAATTTTTTTTTAATTAATTTTGTGATAGGATATGGGAGGAATAACATTTCAGGATTCATCA CAGTGTTTATCAACGGGGTAGCAACAGAAGTTCCAAGGGGCCCAATGGACATCAAAACAGTGTTTGGTGAAGATGGAATG TTAGTTCTCTCCTCTGGTTTGTCACTTCCAACCAATGAATATGGTTTCTTGATGCAGAGCTTGGAGCATGGTGAAAGCTA CTTTCTGGTGAGCACTTATCATACTGCAAATTAGAGCAAGTTTTGATAAACAGCGAAAAATCATGTTAAGGTAAAAATCA TGATAGGCACCAGTCGAATAAATCAAGTGAAGTTGCTGTGGTCTAATTTTAAATTTACCATAATTTTTTGTCGTGTATCC AAACATGAATTTAGGCATTTGTGTTTGTAACTCATTTTCATTCATTATAATTCCTCTCTCCCGTTGTGTATTATAATTGC AACCTTTATTTTGTCTTGGCACAAATGCCTAAATAAATTTTTTGTAATGATGATCGAATTTTTGTTACAGGTTTCAAAGC AAACACAAGTATGAACAGATCTATCAATAGCAGCCTAACTGGAAGCTTTCGTTAGATGTTTCTTCTATATATTGCCTTCG TTTGGTCCTCTTTTTTTTGACTTTATTTCTTTAAATTGTCGTAATCTTTTATATGTGGTTCAAATATTAGAGATCTACAA AGTGATTACAGGACTCTATATATATATATATATATATATATATATATATATATCTATATTTACTTAACAATTATATATAC TTTACCTCCTTATAAAACACTATATGTTTGATGAGATTTTGAGCTGTGTAATATATCTTCCATGTTACTATATATCACGT ACGTCTTACCCAACACATCCATTACCAACAACATGCTATCTTTATTAGATATCATATAAGAAGATGTCATATAGAACTAA AATTGTATCTAATGGATATCATATAGAACTAAAAATGTCATCGGAATTACTTTAAGATATCACTAGGAACAAATGGGAAT CAGAATATTCAAATGGAGGCGGATTGGAAACATATCTAACTTCTTTTGACTTGTGTGCTGGCTTTGTTATTCCCATCTAT TCTATTACTTTCTTGAGGAGCAAAATAGGGAAAGGCTGACACACATCCTCATCACCCTATTTTAAGTAGAGACCGTGATA ATTGACTGCATTGTTTTTTTAGCCTTAATCCAGAAATTAGTCCCTGTCTTTGTTTCGCCGTATAATCTAAGTCCCTTCCT GAAAAAATTTGTAGAAAAGGTCGCATCAATGCAAAACGTCTGGAGCAGGTCATCGCCCGAGTCCGGAGCTCCGGCAAGTG ATGATTTGGTACGCTGACTGGTTTAATGATGCTTACGTGGATTTAAAAAATAAATAAAAAACAAAAAAGAAATTACATAA TTAAATAAAATTAATAAAGTTAAAACCCCATTTTTTTATAAAGCATAATTCAACCCTCTTAATCTTCAAGCTTCATTAGA AATCATCCATCTTCATCTCTGTCTCATCACCCTTCATCAATCTTGGCCATGCATCACCAACTCAACCTCCACCATCAAAC CCCACAACCAGATAAGGTCAAATCAATAATTAAAATACCCTACATTCTTCATATTATTAAAAGAAAGGTACTGACATAAG GGAAAAAACCCATTTGAAGGGAATAAAATAGAAGATAAATATACAAAGCTAGTATCAATTCAAAGGCTTGGTTCTATGAA GGATTAACCCATTAACTCAGAACAATTAAGAGGAAAACCCAGAACAAGCATAAGAAACCCAGAATGGTTTTGTTCTTTCC TCCTAACACAGAAGGAGAAGGAGACGCGAACAAAGATGGTGGATCTGGTGGCGGAGAGAGCGGCGCGCGACTCCAGGGCT TGAAAGAGGTAGCTTCTGGCATGGAGGTGGTGCGGTGAAGACGGAGCTCACAACGGAAGTCTGGGTGTTGGTCGAGCATG TCGGCGCGGCGGCGCACCGGTCATGGGTCTCTTCGATCTGGGTCCGAACGCTGGGGCGTGGGTGCGCGTGGTGACCGCCG AAGCAGAGGTTTGTTGCTGAAATTCTCTCTCTCCTCCTCTCTACTTCACTATGGCTCTTCAAAGCAGCTAAATCTTTCGC CTCAGAAATCTCATTCTTTCCAACCTTATTTGCAGTTGTAGATGCTGGGGTTTCACAACCTCACACTTCTCATTCTCAAA AACCATTGAACGCGATGATGATAATAAACCCACCTCGCGAAACACCATTGGAATTACTAGCTCCAACGTTTTGCCAATTG GGATTGTTACTCTGAAATCTGAATCAATTTTTCCCCTTTTCATTTTTTACTCTGGTTTTTTGGTTGGTTTGTTTCTTGGA TCGAAGATTGAATGAAATTGAATGAATATAATGAAGGAAATAAGAAGAATTTGACAGTGTTGATGTCAGGGGATGAGAAG AAGAAGAACCCTAATTTGATTGGGAATTTGGGTTAATTTGGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0093200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGATCAGGAGGGTGAGTCTCCGGACCCAAACAGTCCGACCCAAGGCTCCTCCTCCTCTGAGTCTCGGACCGGGCC AGTGAGGTCACGGTGGACGCCTAAGCCAGAACAAATCCTCATACTTGAGTCCATCTTCAACAGCGGCATGGTAAACCCGC CAAAGGAAGAGACTTTCAGAATAAGAAAGCTTCTTGAGAAATTCGGCACCGTTGGCGATGCTAACGTGTTCTACTGGTTC CAGAACCGCCGCTCTCGCTCCCGTCGCCGCCAACGCCAGATGCAGGCGTCGGCAGCTCAACATGGCGGTGGTGCAAACCC ATTTCCTCAGCACACCTTCAACAACAACATCAACTCTGCAAGTTCTGCTGCTGCTGCCAAAGGTTTTGGTGCTTCATCTT TCACTGTTAATTCTTCTTCACCTTACTTCTCTGGTTCCTCTTCATCATGCGGTGGTGGTAGTGGTGGTGGTTTTCAAGAA GCCTTAGGTGGTAGTTTCTTCTCAGACTCTGCTCAAATGGGTTTCCCAGAAATTGATCACAACTCAGCTGCATCATCAGT TTTGTATCCTTCTGATCATGCTCAAAATGTGAACTACAACTCAGGATATGGGAGGAATAACATTTCAGGATTCATCACAG TGTTTATCAACGGGGTAGCAACAGAAGTTCCAAGGGGCCCAATGGACATCAAAACAGTGTTTGGTGAAGATGGAATGTTA GTTCTCTCCTCTGGTTTGTCACTTCCAACCAATGAATATGGTTTCTTGATGCAGAGCTTGGAGCATGGTGAAAGCTACTT TCTGGTTTCAAAGCAAACACAAGTATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0093200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDQEGESPDPNSPTQGSSSSESRTGPVRSRWTPKPEQILILESIFNSGMVNPPKEETFRIRKLLEKFGTVGDANVFYWF QNRRSRSRRRQRQMQASAAQHGGGANPFPQHTFNNNINSASSAAAAKGFGASSFTVNSSSPYFSGSSSSCGGGSGGGFQE ALGGSFFSDSAQMGFPEIDHNSAASSVLYPSDHAQNVNYNSGYGRNNISGFITVFINGVATEVPRGPMDIKTVFGEDGML VLSSGLSLPTNEYGFLMQSLEHGESYFLVSKQTQV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 34 34 - –
MobiDBLite
mobidb-lite
8 28 21 - –
PANTHER
PTHR46998:SF2
8 273 266 1.4E-100 –
PANTHER
PTHR46998
8 273 266 1.4E-100 –
SUPERFAMILY
SSF46689
22 96 75 2.61E-14
IPR009057
ProSiteProfiles
PS50071
25 90 66 10.948
IPR001356
Gene3D
G3DSA:1.10.10.60
26 97 72 1.8E-9 –
SMART
SM00389
27 94 68 3.5E-6
IPR001356
Pfam
PF00046
29 89 61 7.8E-13
IPR001356
MobiDBLite
mobidb-lite
84 111 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0093200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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