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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0103300 |
| Transcript ID | LotjaGi2g1v0103300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3SQ21|I3SQ21_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0103300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:34649202..34652146) extracted from Lotus japonicus Gifu genome v1.2.
CTCCCTTCCATCATTCCTGACTCCATTTCACAAACCCTTATTCAGTTCACCACATCATTCCAGACTCGCGCACAAAGCTA CTATTTCCTGCCATCCGCCGTGAACCACCGTTCTCATCGCCGCCGATCCTGATCCGAAGTCCGGCAAAAATGGTTGACAG GATTAGCAGGCTATCAGATGAACTCCTCACTCACATTCTCTCGTTTCTCTCAACTGAAGAAGCTGTTGCCACTAGTGTTC TTTCAAAGAGATGGAGGCCTCTCTGGACCTCAGTCCCCGTTCTCGACTACGACGATGAAATCTATCTCAGAAACGGAAAA CCCTCATATTGCTTTGAAAGGTTCGTATACGCAACCATTTTACCCAGAGATTTGCACCAACCCATTACAAGCTTCCGTCT CAAATATGGGGCATCTGCTGCTGAACTTTTCGAGGGCGATGTTATTTATGACCGTTCAAATGCTGATATCAATATTTGGG TCAACACTGTTATAAGACGGGGTATTCAGAACCTTGACATCGAGATTTATCCTACAAATTTGTATTTTAGTTTGAGCTGC TCTAGTGTCAGCTGCAGAACTCTTGTTGTTCTCAAGTTGAATGGTTTATCTCTTAATGTTTCTTCTTCTGTTGGCCTTCC CTCACTCAAATCTCTACATGTCGAAACAGTTCAATTTGAAGAGCCAAATTATCTTATGGGGCTTCTCTTTGGGTGTCCAT TGCTTGAGGATTTGAAAATATGTTACATAGATTATGTTCAGGATAGCTATTTTTTAAATGAACAGTTTAATAACTTACAC TTTCCCAAGTTGGTTAGGGCAAATCTACTTCATGTTAATATGGCTGGTCATGATACTACTATTCTTCTGAAAGCAGTATG TAATGTGGAGTTTTTGTGCATTCACCAGGTTCGAACATGTCGGATTGGAAGTGTGTTTAGTTTGTTGTATTGTTTCGTAT TTAGATAATATCATCGATATTTGTCATAATATGTCTTTATATGTATTGCAGTTTCGAGCTGATTTTGTGGTGCCTGAATT TCCTCATGTAAGACATTTGGGCCTCTTCTTTGTTACTCATAACTGGCGTGTGGTGCTTTTGATGCTCAAGAATTGCCCCA ACCTTCAAAGTTTTAAACTTAATTTGAATTGATCTTTTGAGGCTAAGGATGTTCTACCTTACCTTCAGTTTGGTGTTCCT GATTGCCTTACATCAGGCTTTACCAAGTGCTACCTTGAATACTACCGAGGCGCAGAAAGTGATCTACTGTTTGCAAAATA TATTATGCAGAATTCACCATATTTACAGTCCATGAAAATTCATAGTGATGCACCTAATCAACTAGGAGTGCTAAAGAAGC TAGCTTTGTGCCCAAGGAAATCTGAATCGTGTGAACTTTCATTTAATTGATAGGTTTGTTAGTAGCTGCAAACTTTTTAC GAGATGATAGCTTTTCCATTTGTTAACATAATGCAAATACTGGACTTGAAGGCCATAGACCGTTTAATTATGTATCTTTG TGTACCCATTATCTGATGCTTTACCACGAGATATGAAGGTGTATATGGGAATGTTGTGTAGTGAGCTTCTTTGGTCTTCC TCTGGTTCTCCTCAAGCATCCTTTCAAGATCTTACTTCAGTAGCCAATCGTGTTATAAGATACTTGCACAAGCACCAATT CCATGCTTATTTGGCTGCTACCATTTAGTGTTCCATATATTGCTCATTGACATCAGATTCCTTTCCAATTGCAAGGATAG TATTTTGTGTTGATGTTTCTCTTTACCTTATATATCTTGTTATTTATGTTTAGATAGTCAATGCTAGATTAGCTAGGAAT TCTTCCACAATGCATATAAACTTTTTTCTGGTAAAGTTGTTTGTCTAATTAGTTATAGGCTTTTGTATTGGTTTCCCCTT TGTCTATTTATCAATGTTTTAAAATTACAACTTATTGTTCAATATATCATTTCTCTGTCACCATATTTTATCTCAATTGC AAAAAGATCGATTATGCAATGTTACATCTCATCTGACCCTCAAATATAATGGTTCCAGTTTATTAGGATAAACTGTTTTC GGAGTTTAATGATTTACCATATCTTTTGATTTAACAAATCTTTATCTTGCTTTTTGAGAAAATGAATTTTGAAAGTTATA AGATTTCTTTAATCTCTCAATTTGCAAATTTGCTGATTTGGTTGTTTTATGGTTTAAGTACCATGCAATTTCTCTCACGT TCTAGCTTTCTATCATGTTCATTTTCATCAGGATGCTGTCTAATGCTATCCAAGTGTGCTGATCGTGAATCTTGAACTAC TCCTTTTAGACTCTCTCGCTGGATCTGGTTATCCCAGCTGATCTTGCTTTGCTGTTACCACTGCTTCTCTGTTCTGGACT TCTGGCAGCTTTTGAGTCCTCTCTATCACCATAAACCTCATCAAGTAAAGGTTGCTCAACTTCCAAAGTTAATAATCATT TCCTCATTTCCCAATATGGAACTTCCATCTGCAGTCCTATTGTCCTCAAGTTCAGTTTCTTTGTCCGGGGAACAAGCTTG TAAAGTGAAGTAAGATCTTGAAAGGATGCTTGAGGAGAACCAGAGGAAGACCAAAGAAGCTCACTACACAACATACAGAG GCAGAAAGAAGAACCCTGAACTGTTATTGCTGTAAAGGAAGGTCTTGCACTTAGCATGAGAGCAGATATGACCAAACAGA ATGTCCAAGAAATTTGTAAATGGGAGAATCCGGCAGTTCCATGAAGTTGTATTATTGTTCTTTTGTTCTCAGTATTTACA TCAATATATGTATCAAACATCCACTTTTTACTAAATGTTTAACATCGAAATGGTTATCAGACATCCAACATGTTATTGCT TATAAGTTATAAGAAAAAGAGCATATTGTCTAGTTTCACCAAACAGTACTAGGATCCTTTCAAGC
CDS sequence (LotjaGi2g1v0103300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGACAGGATTAGCAGGCTATCAGATGAACTCCTCACTCACATTCTCTCGTTTCTCTCAACTGAAGAAGCTGTTGC CACTAGTGTTCTTTCAAAGAGATGGAGGCCTCTCTGGACCTCAGTCCCCGTTCTCGACTACGACGATGAAATCTATCTCA GAAACGGAAAACCCTCATATTGCTTTGAAAGGTTCGTATACGCAACCATTTTACCCAGAGATTTGCACCAACCCATTACA AGCTTCCGTCTCAAATATGGGGCATCTGCTGCTGAACTTTTCGAGGGCGATGTTATTTATGACCGTTCAAATGCTGATAT CAATATTTGGGTCAACACTGTTATAAGACGGGGTATTCAGAACCTTGACATCGAGATTTATCCTACAAATTTGTATTTTA GTTTGAGCTGCTCTAGTGTCAGCTGCAGAACTCTTGTTGTTCTCAAGTTGAATGGTTTATCTCTTAATGTTTCTTCTTCT GTTGGCCTTCCCTCACTCAAATCTCTACATGTCGAAACAGTTCAATTTGAAGAGCCAAATTATCTTATGGGGCTTCTCTT TGGGTGTCCATTGCTTGAGGATTTGAAAATATGTTACATAGATTATGTTCAGGATAGCTATTTTTTAAATGAACAGTTTA ATAACTTACACTTTCCCAAGTTGGTTAGGGCAAATCTACTTCATGTTAATATGGCTGGTCATGATACTACTATTCTTCTG AAAGCAGTATGTAATGTGGAGTTTTTGTGCATTCACCAGTTTCGAGCTGATTTTGTGGTGCCTGAATTTCCTCATGTAAG ACATTTGGGCCTCTTCTTTGTTACTCATAACTGGCGTGTGGTGCTTTTGATGCTCAAGAATTGCCCCAACCTTCAAAGTT TTAAACTTAATTTGAATTGA
Protein sequence (LotjaGi2g1v0103300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDRISRLSDELLTHILSFLSTEEAVATSVLSKRWRPLWTSVPVLDYDDEIYLRNGKPSYCFERFVYATILPRDLHQPIT SFRLKYGASAAELFEGDVIYDRSNADINIWVNTVIRRGIQNLDIEIYPTNLYFSLSCSSVSCRTLVVLKLNGLSLNVSSS VGLPSLKSLHVETVQFEEPNYLMGLLFGCPLLEDLKICYIDYVQDSYFLNEQFNNLHFPKLVRANLLHVNMAGHDTTILL KAVCNVEFLCIHQFRADFVVPEFPHVRHLGLFFVTHNWRVVLLMLKNCPNLQSFKLNLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 297 | 296 | 3.1E-58 | – | |
| PANTHER | 2 | 297 | 296 | 3.1E-58 | – | |
| ProSiteProfiles | 2 | 55 | 54 | 8.729 | ||
| Gene3D | 3 | 299 | 297 | 8.8E-25 | ||
| SUPERFAMILY | 3 | 47 | 45 | 4.19E-12 | ||
| Pfam | 4 | 42 | 39 | 3.2E-8 | ||
| SMART | 8 | 47 | 40 | 0.003 | ||
| SUPERFAMILY | 133 | 297 | 165 | 2.59E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0103300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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