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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0104200 |
| Transcript ID | LotjaGi2g1v0104200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor Inducer of CBF expression 1; TAIR: AT3G26744.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1; TrEMBL-Plants: tr|S4WVT0|S4WVT0_9ROSI Inducer of CBF expression 2; Found in the gene: LotjaGi2g1v0104200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:34922293..34925921) extracted from Lotus japonicus Gifu genome v1.2.
GTGTCAATTTTTTTTATCTTTTCATCAATGAAGGGAAATCCGGAGCATGTGTTGTAAAGCCAGAAACGGCAAGCAAACAC AGATAGTCCAGAGCAGCATACACATTGATAAAGCTCACACCCACCACTCGCACTCCTCTCGTTTCATCTTATAACGTTCT TCAATCTCTCAATCTCGTTTTCCTCTCACCAAAATCATGCTCTGAAACAAAAAACCAAAGAAACTTAAAAAAAAAAACTT ATAAAGCTCTTCACCTTTCTCTCCATTTTAACCAAATCACACAAAAACTCACTCTCTCTCTCTCTCTCTAGATGATACCC ACAACAACAACTCACGACGTTCCCTGGATGGAACCACAACACACAACATGGACCTACAACAACAGCATTGGTGACCCCAT AAACGACGACGTTTCAACGATGGGTGGTGATGGCCATTTTCCTCCCTTCAAATCCACGCTGGAAGGTGACTGGTACATGA ATCCACCGCACCATGAGGAGCTTCTGCAAAACCAGACGCAACACACCACCGACATTACTTTCCCAAACACTGGTTTTCTC ATGGATTCATCTTCCTTCACCCTCGACCCTTCATCACACCACTCACAATCCTTTTTGCCTCCGAAATCAGACTTCTCCTC TTTCTTCAGCACCACCATAAGTAGCAACAACAACAACAGTGACAACCCTTTTGGCAATGCCTTCAATTTGGGCTCGCATG GCGGTTCCATCGCTTCCAATTCCCCTATTTTCTTCTCGCCCCAAATGGGCAGCACGGTCCCCGAGTTGAGTTCGAACCCC GATTTCACTGCAACCCGTGTCGTCGAACTCAGTGGCGGGTTTGTCCCAATAAGTGTAGAACAAGAACAAGCCTTTGACGG TTCTGGGCCTCATAATGCTTTGTTTTCGAACAAGGCTAATGTTTTGAGGCCTCTCGAGGCTCTTCCTCCGGTGGGTGCGT CACCGACCTTGCTCCAGAAGCGGGCAGCGCGCTCAGGCGTTGGCGGTGGAGTCTTGGTGGTTTCTACGCCACCGAGGTTT GCCGGCTTTTCAGCTGGGTTGAACTCAGAAGAGGGAGATGTTGAGGAAGAGTTGAATTATGAATTTGATGAAATTTTTGA TATTGGAAAGTTGGAGGAGAATGAGAATGATGGGGGCAACAATTTTTATTCAAATAACAATATTGATGCTAATAATCATA ATAGTGATAACGGTATGACTGGTGGAGACCATAAAGGCAGGAAGAAGGGGATTCCGGCGAAGAATCTCATGGCTGAGTGG CGGCGCAGGAAGAAACTCAATGATAGGTTGTACATGCTTCGGTTTGTTGTGTCAAGGATTAGCAAGGTATGGAAAAATTG GTTTGAAGGCTTGGTTTTCCTCTTTTTTTGCATGTGATTTGTTTTTGTAATTTTTGTTGAAAGATTTTACGATCTACTAA CTTGTTTCAGTGTTCTGTGACTTCTACCAGTTTGTTGATTTCGTGTGTTGTGGTTGATTTTGATTATGTTGAAAAATCAT GATGTGTTCTACAAACTGAACTTTGGGAGTTTCTTATTATGTTAGATCTTCCTATAATGTGAAATAACATGTAATAATTT ATGTTTTAAGAATCGGATGTGCATACATGACAACTTTTATAAATGACATGTTGTGGTTCCACTGGTTAGGTTATTAACAA TTAACAAATTGCTCTCTTGGTGTGTCCGGGATCAAACAAGCTAATATTTTTCTTTTTTTGGTTTATTCATAGATGGATAG AGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTACTTCAACAGATTAGTGACCTTCATAATGAGCTAGAGT CAAGCTCTCCTGGCTCATATTTGCCACCTGCAAGCTTTCACCCTTTGACACCCACTCTGCAAACCCTTCCCTCTCGAGTG AAGGAAGAACCAGTGCCAAGTCCGAAAAACCACTCAGCAAAGGTATTTGATCATCTTAGTGCAAAATTGTTTTTCTTCCC TATAAATTGTTTTGACAGATCTTCCATGCTGCTTTGAATTGTTAGGATCTTCGAAGTATTCTATTTTGTATATGAATTAT TTTATTGCTCATGTTTTTTCTCTCCCTTTGTTTGTTCACTCAAAAGAGCTAGCCCATTTTTCCTACAACACATGGAGGGG GTTCAAAATTTTCTAAGTTGCACGTTGAATTGACCCAACCGACTGTGATAGTTGTAGTCATTATAGTAGCTTGTTGCTTG CTTGCAAACCCATGTCAAACTATCACAAATCACAATTGACACTCCTTTTATCTTTACATCTCACATGGCCAACAAGTTTA CATGTCTGGTGGGTGCAAACTTGGTGATAATGTAGACAATTAGGTTCAAATGAAATATCTTCTTTTTATTTTGAATAGCT AGCGTCATGTAGTTTGCGACATAGAGTCTTCCACAAAAATTTATACCTTTTCCAAATCCATGGAAAATCATGTGTATGTC TTTTTTTATTTCCCATTCCATCAATCTTCATTGTAATTACATCTGGATAAAGATTACATGGTCATCTTTGCAGCATAAAA CTGTATTGATCTTGTCAATTATTCAAAATCAGATAGAGAAATCTCAGATTTGTGTCATAAATGAGCTTATATGTCATAGG TACTCAACCTTTGTGATGGTGTATGTGGTGATTTACTCCCTAGAAGTCTAATAAGTAATAAGGAAAACTAAAGATCAACA ACTAGATTTAGGAGATTTTTTTTTGTTCTGACATAACTTAATTGCAGGGTAGTTGACTCGAGATTTTCTGAATTTTATAG GTGGAGGTAAGGGTAAGGGAAGGAAGGGATGTGAATATCCATATGTTTTGTGCCCGCAGACCAGGTCTTTTGCTTTCCAC CATGAGGGCATTGGATAACCTTGGATTGGATGTTCAACAAGTTGTTATCAGTTGTTTCAATGGTTTTGCTTTAGATGTGT TCAGAGCTGAGGTACATAGTTATTTTCCTATATTGTACATTTCCCCTTTTTTGTTTTCCTTGCTTGTTTATTATGATGCT CATCATTGATTGGTATTTGGTCGATAACTAATCATACCATCAAATGTTCTTCTGATAACTGTACCTAATTCTTGCATCCA TTTCAGTTCTGACAACACTGCTTTACAAGTTCATACTTGCAATCTTCCAGTTCAGACTTACATTCATTCTAGAATCTAGA TTATGTTTTGTAACAAATTTTATGTTTGAATTATAAGCTCATTGGGTAATTGTTTACCAGCAATGCAGAGAAGGCCAAGA TGTCCTCCCTGAGCAAATTAAAACAGTATTGTTGAATATAGCAGGTTTCAATGGTATGATGTGAGTGAAATTCTTGACAT ATGCTATCCATGTAGAGATTACTGTAGCATGCAGTTTGTAAATGTCATGATCCTCCTTGTAAAGCTGTGTCCAGGCCAAG ATCAAAATATTTAACTACTCTTTAGGTTGAGGAGTTAGCTCCTGTTATTTTTCTGAATTTGAGAATAGCAAACTTTTTTT GTTACTTCTTGTTGTAAAAAAGTCATGAAAAATTTTTGTCGTTGCTTTTATATTCCCTACCCAATTTAGCTTCATGGTAA GTTTGTTCTTGCATATTTTAAATGCCCTC
CDS sequence (LotjaGi2g1v0104200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACCCACAACAACAACTCACGACGTTCCCTGGATGGAACCACAACACACAACATGGACCTACAACAACAGCATTGG TGACCCCATAAACGACGACGTTTCAACGATGGGTGGTGATGGCCATTTTCCTCCCTTCAAATCCACGCTGGAAGGTGACT GGTACATGAATCCACCGCACCATGAGGAGCTTCTGCAAAACCAGACGCAACACACCACCGACATTACTTTCCCAAACACT GGTTTTCTCATGGATTCATCTTCCTTCACCCTCGACCCTTCATCACACCACTCACAATCCTTTTTGCCTCCGAAATCAGA CTTCTCCTCTTTCTTCAGCACCACCATAAGTAGCAACAACAACAACAGTGACAACCCTTTTGGCAATGCCTTCAATTTGG GCTCGCATGGCGGTTCCATCGCTTCCAATTCCCCTATTTTCTTCTCGCCCCAAATGGGCAGCACGGTCCCCGAGTTGAGT TCGAACCCCGATTTCACTGCAACCCGTGTCGTCGAACTCAGTGGCGGGTTTGTCCCAATAAGTGTAGAACAAGAACAAGC CTTTGACGGTTCTGGGCCTCATAATGCTTTGTTTTCGAACAAGGCTAATGTTTTGAGGCCTCTCGAGGCTCTTCCTCCGG TGGGTGCGTCACCGACCTTGCTCCAGAAGCGGGCAGCGCGCTCAGGCGTTGGCGGTGGAGTCTTGGTGGTTTCTACGCCA CCGAGGTTTGCCGGCTTTTCAGCTGGGTTGAACTCAGAAGAGGGAGATGTTGAGGAAGAGTTGAATTATGAATTTGATGA AATTTTTGATATTGGAAAGTTGGAGGAGAATGAGAATGATGGGGGCAACAATTTTTATTCAAATAACAATATTGATGCTA ATAATCATAATAGTGATAACGGTATGACTGGTGGAGACCATAAAGGCAGGAAGAAGGGGATTCCGGCGAAGAATCTCATG GCTGAGTGGCGGCGCAGGAAGAAACTCAATGATAGGTTGTACATGCTTCGGTTTGTTGTGTCAAGGATTAGCAAGATGGA TAGAGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTACTTCAACAGATTAGTGACCTTCATAATGAGCTAG AGTCAAGCTCTCCTGGCTCATATTTGCCACCTGCAAGCTTTCACCCTTTGACACCCACTCTGCAAACCCTTCCCTCTCGA GTGAAGGAAGAACCAGTGCCAAGTCCGAAAAACCACTCAGCAAAGGTGGAGGTAAGGGTAAGGGAAGGAAGGGATGTGAA TATCCATATGTTTTGTGCCCGCAGACCAGGTCTTTTGCTTTCCACCATGAGGGCATTGGATAACCTTGGATTGGATGTTC AACAAGTTGTTATCAGTTGTTTCAATGGTTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCAGAGAAGGCCAAGATGTC CTCCCTGAGCAAATTAAAACAGTATTGTTGAATATAGCAGGTTTCAATGGTATGATGTGA
Protein sequence (LotjaGi2g1v0104200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPTTTTHDVPWMEPQHTTWTYNNSIGDPINDDVSTMGGDGHFPPFKSTLEGDWYMNPPHHEELLQNQTQHTTDITFPNT GFLMDSSSFTLDPSSHHSQSFLPPKSDFSSFFSTTISSNNNNSDNPFGNAFNLGSHGGSIASNSPIFFSPQMGSTVPELS SNPDFTATRVVELSGGFVPISVEQEQAFDGSGPHNALFSNKANVLRPLEALPPVGASPTLLQKRAARSGVGGGVLVVSTP PRFAGFSAGLNSEEGDVEEELNYEFDEIFDIGKLEENENDGGNNFYSNNNIDANNHNSDNGMTGGDHKGRKKGIPAKNLM AEWRRRKKLNDRLYMLRFVVSRISKMDRASILGDAIDYLKELLQQISDLHNELESSSPGSYLPPASFHPLTPTLQTLPSR VKEEPVPSPKNHSAKVEVRVREGRDVNIHMFCARRPGLLLSTMRALDNLGLDVQQVVISCFNGFALDVFRAEQCREGQDV LPEQIKTVLLNIAGFNGMM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 108 | 499 | 392 | 3.0E-149 | – | |
| PANTHER | 108 | 499 | 392 | 3.0E-149 | – | |
| MobiDBLite | 280 | 302 | 23 | - | – | |
| MobiDBLite | 280 | 313 | 34 | - | – | |
| Gene3D | 310 | 373 | 64 | 3.0E-10 | ||
| ProSiteProfiles | 313 | 362 | 50 | 13.103 | ||
| SUPERFAMILY | 316 | 386 | 71 | 1.02E-12 | ||
| SMART | 319 | 368 | 50 | 5.7E-10 | ||
| CDD | 320 | 367 | 48 | 4.81822E-10 | ||
| Pfam | 320 | 362 | 43 | 3.7E-5 | ||
| CDD | 428 | 469 | 42 | 2.18556E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0104200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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