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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0105700 |
| Transcript ID | LotjaGi2g1v0105700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein family; TAIR: AT3G19330.3 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330; TrEMBL-Plants: tr|A0A1J7HJ98|A0A1J7HJ98_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0105700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:35759779..35761557) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAATTGTAGAAACCACTAAATGCTTACATTATTTCCTAAATCCCTAAATCTAAGGAAACAAACATATAATCTCCTCT TTTAATGGTATTTTCGGTTTCACACTGAAATGGTGCAGAATATAACATTTAACTAACTAGATGATTTAAGTCTTAACTCC GAAGAAAACTTACATTGACGACGATCTCCTGGATTTACCGACAACATTCATTCTCCATCCAATGTTCTGCGACTAATGAA CCCGCACTCTGCTGAATCGGTGATGCTAATCCAGCTTCCTCATGATCAATAGAAATTCTCTCCGAAAATTAGAATGCTGG AATGCCTCTCCTTCAAAATCATCCACCGCTTTAAGCCCTAATTCCAGTACTCAAGGTAACAAACTTCAAACCAAAATTGG AATCAATCATTGAATCTAATCCTTCAAAATTGGTAGCAACATTTCAATTTTTCAATTCCTAACAGAACACCTGTTATCTG TTTGTGGAAATGTCTCACAGAGTACACTCCCGCAAGCACCACTCCCAGCGTCTCTCGTGAGTTCAGCCTCGCCGTGCATT CCGCCTCCTACGCCGAAACCCGCTCCCTGATCCAAGCTGCTCCGCCGCAAGGCCAAACGCGCCTCCTCCATCCCGATCGA GAGCTCGTCGAACAAGCGCTGATCCGCGACGAAAGCACCACTCACAGCGATCTCATCTCCAAATACTTCGACCACAGCGA AACCGCGTCCGAGCTCTGCCTCCACCTTCACCAACACGCGGAACTCGCACGCGCCATGTACGCGCCTCTCCTTGATATTT TCGCTCTAATGGAACCTTCTTGCGATCGCGCGTTCATCCTCTTCCTCGAGTTCGACAATCGCGACAATCCTCTCCCTAAT TCCCACACCTTCGGCGATATTCGCAGCGCCTTGTCGGTTCTCAAGACACAGCTTGACAAACGCTTCCTCAAATCCCGGTC CAGGGTCGGCCTTATCCGCCGCGTTGTCGCAGCGGCGCCCGTCTGCGTAGGAGGTGCCGCGTGCCTTCGGAACCCTGATG CAACTGAGAATAGGGAGCTGGCGGGGCTGGCGCAGCTTGATGCCACTGCCAAGTGCGCCTACGTGCTGAGCAACGATCTC GGCACAATCGACAGCCTTGTCGCCCGCCTCCGCGCTGCGGTGGAGGGCGACAAGGCTCTGGTTCGGCTGGGTTTGGAGAG AGGGAGGGAGAGGTTCACCGTGCAGGAAGTACTCAAGCAGCTATCCAAGAGCCATGGGAGTTTTCTACAGCAGCTTGAGG ACCTTGAGGAGCACATATGCCTCTGCTTTTACACTGTTAACAAAGCAAGATCATTCCTCCTTCAAGAGATATGCAATTGT CAAACTCTCTAGTTCGTCTTATTAGCTAACTATCCTTTCTTTTTATTTTTCTTGGTCTATGATCACTGATAGTTTATGAT GTATGATCACTGCAAATATAACTAATGTTGTCAAGATCTTGATTTTACTTATCATAGTAAATTAGTAATCCTCCAAATCA CAATTCTTAATTAATGATTTAAATTCTGCATTATTCTTTCAAGTGTACCGTGCCCTTTACTAAAGATAAATTTCATGCAC TACTTGTTATTCATGTTTGAAATTTGGGTTCTATGATGTGTGACATACACGTATGTCTAGTAATCAGTAGTTGTTGTGGA AAATTTTATTGCTCTGTTTATAATGCCAACGGTGCCATTTACTTACTTTTTGCTAAAAGTTTATGTCCAACCTAGTAGAA TCCGAGTTCTTCTGTGTGA
CDS sequence (LotjaGi2g1v0105700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAATAGAAATTCTCTCCGAAAATTAGAATGCTGGAATGCCTCTCCTTCAAAATCATCCACCGCTTTAAGCCCTAA TTCCAGTACTCAAGAGTACACTCCCGCAAGCACCACTCCCAGCGTCTCTCGTGAGTTCAGCCTCGCCGTGCATTCCGCCT CCTACGCCGAAACCCGCTCCCTGATCCAAGCTGCTCCGCCGCAAGGCCAAACGCGCCTCCTCCATCCCGATCGAGAGCTC GTCGAACAAGCGCTGATCCGCGACGAAAGCACCACTCACAGCGATCTCATCTCCAAATACTTCGACCACAGCGAAACCGC GTCCGAGCTCTGCCTCCACCTTCACCAACACGCGGAACTCGCACGCGCCATGTACGCGCCTCTCCTTGATATTTTCGCTC TAATGGAACCTTCTTGCGATCGCGCGTTCATCCTCTTCCTCGAGTTCGACAATCGCGACAATCCTCTCCCTAATTCCCAC ACCTTCGGCGATATTCGCAGCGCCTTGTCGGTTCTCAAGACACAGCTTGACAAACGCTTCCTCAAATCCCGGTCCAGGGT CGGCCTTATCCGCCGCGTTGTCGCAGCGGCGCCCGTCTGCGTAGGAGGTGCCGCGTGCCTTCGGAACCCTGATGCAACTG AGAATAGGGAGCTGGCGGGGCTGGCGCAGCTTGATGCCACTGCCAAGTGCGCCTACGTGCTGAGCAACGATCTCGGCACA ATCGACAGCCTTGTCGCCCGCCTCCGCGCTGCGGTGGAGGGCGACAAGGCTCTGGTTCGGCTGGGTTTGGAGAGAGGGAG GGAGAGGTTCACCGTGCAGGAAGTACTCAAGCAGCTATCCAAGAGCCATGGGAGTTTTCTACAGCAGCTTGAGGACCTTG AGGAGCACATATGCCTCTGCTTTTACACTGTTAACAAAGCAAGATCATTCCTCCTTCAAGAGATATGCAATTGTCAAACT CTCTAG
Protein sequence (LotjaGi2g1v0105700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINRNSLRKLECWNASPSKSSTALSPNSSTQEYTPASTTPSVSREFSLAVHSASYAETRSLIQAAPPQGQTRLLHPDREL VEQALIRDESTTHSDLISKYFDHSETASELCLHLHQHAELARAMYAPLLDIFALMEPSCDRAFILFLEFDNRDNPLPNSH TFGDIRSALSVLKTQLDKRFLKSRSRVGLIRRVVAAAPVCVGGAACLRNPDATENRELAGLAQLDATAKCAYVLSNDLGT IDSLVARLRAAVEGDKALVRLGLERGRERFTVQEVLKQLSKSHGSFLQQLEDLEEHICLCFYTVNKARSFLLQEICNCQT L
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 16 | 40 | 25 | - | – | |
| PANTHER | 23 | 205 | 183 | 1.5E-89 | – | |
| PANTHER | 23 | 205 | 183 | 1.5E-89 | ||
| PANTHER | 194 | 317 | 124 | 1.5E-89 | – | |
| PANTHER | 194 | 317 | 124 | 1.5E-89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0105700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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