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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007749
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 21 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.585s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0348769.1
n.a. PREDICTED: UPF0496 protein At2g18630-like [Glycine max] gi|356498418|ref|XP_003518049.1| chr0 183071408 183072438 +
2 domain predictions
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Lj0g3v0348779.1
n.a. PREDICTED: UPF0496 protein At2g18630-like [Glycine max] gi|356498418|ref|XP_003518049.1| chr0 183071442 183072438 +
2 domain predictions
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Lj1g3v2239510.1
n.a. PREDICTED: UPF0496 protein At1g20180-like [Glycine max] gi|356509611|ref|XP_003523540.1| chr1 26430931 26431836 +
2 domain predictions
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Lj2g3v1805140.1
n.a. PREDICTED: UPF0496 protein At2g18630-like [Glycine max] gi|356496799|ref|XP_003517253.1| chr2 27287303 27289052 +
2 domain predictions
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Lj5g3v0243320.1
n.a. PREDICTED: UPF0496 protein At1g20180-like [Glycine max] gi|356552052|ref|XP_003544385.1| chr5 2034148 2035563 +
2 domain predictions
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Lj5g3v1949510.1
n.a. PREDICTED: UPF0496 protein 3-like [Cicer arietinum] gi|502155435|ref|XP_004510071.1| chr5 27420011 27421917 +
2 domain predictions
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LotjaGi1g1v0634500.1
n.a. UPF0496 protein family; TAIR: AT3G19330.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330; TrEMBL-Plants: tr|G7KXB2|G7KXB2_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0634500 LjG1.1_chr1 118897045 118900699 -
3 domain predictions
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LotjaGi1g1v0634500.2
n.a. UPF0496 protein family; TAIR: AT3G19330.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330; TrEMBL-Plants: tr|G7KXB2|G7KXB2_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0634500 LjG1.1_chr1 118897068 118900653 -
3 domain predictions
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LotjaGi2g1v0011000_LC.1
n.a. UPF0496 protein; TAIR: AT4G34320.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320; TrEMBL-Plants: tr|I1KKP1|I1KKP1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0011000_LC LjG1.1_chr2 4055793 4058154 -
3 domain predictions
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LotjaGi2g1v0105700.1
n.a. UPF0496 protein family; TAIR: AT3G19330.3 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330; TrEMBL-Plants: tr|A0A1J7HJ98|A0A1J7HJ98_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0105700 LjG1.1_chr2 35759779 35761557 +
2 domain predictions
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LotjaGi2g1v0394100.1
n.a. UPF0496 protein; TAIR: AT2G18630.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630; TrEMBL-Plants: tr|G7KC47|G7KC47_MEDTR UPF0496 plant-like protein; Found in the gene: LotjaGi2g1v0394100 LjG1.1_chr2 89168167 89171842 +
3 domain predictions
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LotjaGi2g1v0394100.2
n.a. UPF0496 protein; TAIR: AT2G18630.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630; TrEMBL-Plants: tr|G7KC47|G7KC47_MEDTR UPF0496 plant-like protein; Found in the gene: LotjaGi2g1v0394100 LjG1.1_chr2 89168301 89171452 +
3 domain predictions
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LotjaGi2g1v0394100.3
n.a. UPF0496 protein; TAIR: AT2G18630.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630; TrEMBL-Plants: tr|G7KC47|G7KC47_MEDTR UPF0496 plant-like protein; Found in the gene: LotjaGi2g1v0394100 LjG1.1_chr2 89168829 89169968 +
3 domain predictions
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LotjaGi3g1v0505800.1
n.a. UPF0496 protein; TAIR: AT4G34320.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320; TrEMBL-Plants: tr|I1LJG7|I1LJG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505800 LjG1.1_chr3 92322307 92324845 -
3 domain predictions
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LotjaGi3g1v0505800.2
n.a. UPF0496 protein; TAIR: AT4G34320.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320; TrEMBL-Plants: tr|I1LJG7|I1LJG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505800 LjG1.1_chr3 92322817 92323950 -
3 domain predictions
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LotjaGi4g1v0115000.1
n.a. UPF0496 protein; TAIR: AT2G18630.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630; TrEMBL-Plants: tr|I3S560|I3S560_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0115000 LjG1.1_chr4 16630720 16633178 -
3 domain predictions
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LotjaGi4g1v0115000.2
n.a. UPF0496 protein; TAIR: AT2G18630.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630; TrEMBL-Plants: tr|I3S560|I3S560_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0115000 LjG1.1_chr4 16631488 16632618 -
3 domain predictions
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LotjaGi5g1v0003600.1
n.a. UPF0496 protein; TAIR: AT1G20180.1 transmembrane protein (DUF677); Swiss-Prot: sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180; TrEMBL-Plants: tr|I1MC16|I1MC16_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0003600 LjG1.1_chr5 1006042 1007691 -
3 domain predictions
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LotjaGi5g1v0290000.1
n.a. UPF0496 protein; TAIR: AT1G20180.2 transmembrane protein (DUF677); Swiss-Prot: sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3; TrEMBL-Plants: tr|I1LDF4|I1LDF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0290000 LjG1.1_chr5 60663541 60664930 +
3 domain predictions
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LotjaGi5g1v0297900.1
n.a. UPF0496 protein; TAIR: AT3G49070.2 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070; TrEMBL-Plants: tr|A0A072VNT1|A0A072VNT1_MEDTR UPF0496 plant-like protein; Found in the gene: LotjaGi5g1v0297900 LjG1.1_chr5 61478284 61480469 +
3 domain predictions
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LotjaGi5g1v0297900.2
n.a. UPF0496 protein; TAIR: AT3G49070.2 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070; TrEMBL-Plants: tr|A0A072VNT1|A0A072VNT1_MEDTR UPF0496 plant-like protein; Found in the gene: LotjaGi5g1v0297900 LjG1.1_chr5 61478284 61480469 +
3 domain predictions
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