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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0106500 |
| Transcript ID | LotjaGi2g1v0106500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NDH-dependent cyclic electron flow 5; TAIR: AT1G55370.2 NDH-dependent cyclic electron flow 5; Swiss-Prot: sp|Q9C503|NDF5_ARATH Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5; TrEMBL-Plants: tr|I3SUH1|I3SUH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0106500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:36171492..36174449) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCAAAAATGAGGTGTGTATATATCATTACTCCTCGTGAAAGACTCAAAAAGTAACTTATATTATTGCTAACGTGTTA AGAAAAAGACAAAGGGTTACAAAAGAATCTTGAAATATTTGAGAAGCTAATAAGCAATAAGAAATGCGATAATATCATCA GTATCACCTTATCCTCATATAGATCAATTCAAGCTAAACCATGGCTTTGAGTTCAATTTTTTGCTCCACTCGCCTCATTT CCACATCCCTTGTCACTGTAAATTCAGCTTCACACACTTGCTATGTTCCACACAAGCAACGCAAGAGTGAGTTTCCACTC CCCGCAGTGGCTTCAGTCCCTTACCAACCCATCAACTATGATTATCTACAAGAGGAGTTCAATGGACTTGGTGTCACCTT TGAAGAAGCTGGTGGTGACAGTTGCATGGCAAAGATGGAGTTGAAAAATGGAAGCACTGCAACGCTGTTGCTACCAAGTG GGTTGATCACTTCCTACAAGGCCCCCATGTGGCATGGTGGCAAGGTGGAGCTTCTCCACACTGCAGTTTCAGAGGGGGAA TATGGCCATGCCATCATCCAAGGAGGGGTGTCTTTAAACTTCAATTTTCAAACCATTCATGATGATGATGGAGAGTCTTG GTCTCCAACTAACTGGGTTCTCCATAATATCAAAGGCAATGCTGAGGAATCGATTCAGGTCTGCTTTAATTTCCCTTGTG TGATTTCAAATTAATTTGTCTTCTCATTGCTTCTTCCTTCTTCTTCTTCATTTGACAAGTAAGGAAGTATATGATCTTTT TGGACATCATGGGAAAAATAGTGGCCCCCGCAACCGCAGCTGTGATAAAAGGGTTTTCAAGTCTCCGCATCAGCATCTGA CCTCAATTGTGGCTGTTCTTAGTTGTTTTAGCACTTGCTATCAGTATTTTGAAATGCATGAAATAACTAGTCCGAACTCC TAGTGAATCAGGAGTTAAATCTTGTAAGGAAAGAGCTAAAAACGGAGTTTGTCAATGCACATGCTAATAGATACTTCAGA TTACTTCCTCTTATTTCAGTTTTTATCTTGAGCGCGGGCCTTGGCGCAACGATAAAGTTGTTGCCATGCGATTTTGCAGT CATAGGTTTGAGCCGTGAAATCAGTCTCTTGCAAAAATGCAAGTTAAGGTTGTTTACATTAGAACCACAAAGTGGTTTCA ACCCCTCCCTAGGCCTCGGGCATAGCGGAGCTTTATAGTATAAGGTTTGGCCTTTATTTCAGTTTTTATCTTCTATCTTT GCCTTTTGTCTTGGGTAAGTATACATATTCCTTTGGTTTTTCTCTATTATGTATGTTACTGGCTGGCTGTTCTCTCTTCA CTTTTTTTTTAAATGCTAACTATAGGCTTAGTACGTTGAGATATCTTATGCAGGTAGAATTAATAAACAGAGCAGCAGAG GACAAGATTGGGTTAAAATACATTGTGACTTTGGAAGAAGATGTCTTGAGCTCAGAGCTTGAAATCTCAAACCCAAAATC TTTACCACTTCAGATGATAGGGTCCATCCTGAGTCATCTGACAGTAAGCACACCAGAAGCTACTTATGCAATAGGATTGG AAAGATCAAATTACTGCATCAAGCCCCCTTTTGAATCAGGATTTGTTTTGAGTCCTCCAGATTCAGGCCAGGAAGAAGGA GATGGCAAAATATGGAATTCCTCACCACTTAAGCAACTCTTTCCTCGTTGGGGTGCGAATAGTCAGAACAGCGAAACAGA AGGAAGCCAAGGAGGTATTGAAGAGATCACTGGTGAAGAAATGGAGAGCTACAAGCAGTTAAGAGACAAATTAAGTCTTG TATACACAAATGCGCCTCGAAGCTTTACAGTTATTGATAGGGTATGTAACCATCATTCAGAACAGGTAGAATGAGTAATG ATACTTGCACACACAAACACGTCACATATTTTCCCTCTTGCCATTAGATGACATCCTGATAATAGTAAAGAATGTGTACA TACCTCACATAGTTTAAGCAAAGAATCTTTTCTTGTAGAATACATACCTCAGACTCAGAATATATTCTAGTATATATCTG AGTATTACAACTGATGGGTACTATTGCAGGATTATTCAATCCAATATTGATCTCGTCCTCCTCCATCTCTATCTACCACA GTACTAATTCTACATATCTTCGTGATATTTATTACCTTACCAGTCAGTTGAAAATGTTCAATTTAAAGGTTCCTTTTCTT TAGACTCTGATTGTGCTGAATACATATTTCTTCGACAACAATTCATGGATTTTAATCGTAGATTAGTATTTAATTAACTT TCTTGCTAAAGTTGAGTAACAAGTTAGGGTGCATGTCATCAAATTTAAGTTCACAACTACCCACTCTCGGCATCAAATTT ATAGGTTACGCCAACCCTAATATATTATCTTTTTAATTCTTCTTATGATCTCATCCAATAAATCTTCGATCATATCAGGG TAGAAGAAACTCAGTGGTAATTGGAAGGAATGGATTTGAAGAAACCTACCTCTATAGTCCTGGCTCAAGAGTTGAAAGTT ACAGCAAGGATGCTTACATATGTGTTGGCCAAGCTGCGGTCCTCCAACCAATAGTACTAGGTCCTGAAGAGGTATGGAAA GGAGGGCAGTATCTACAGAATCCAAATCTATAAAATGATGCTTAAGCTTGCTTTGAGCAAATGGTTAGAAATCACATTTT AAAAAAATGGCTTTTGTGTAAAATATAGGATTGTCCCTTTGAATTTGTTTGGTGTTGGATAAAGGGTAAAGAGTGCAGCA CATTGATGTATCCAAATGGCTTAACAATTATCATTGTACAATTTCTAATGATAAAATTGCTCTTTTAATGATGTGAAAGA TTTGGAGCAGAAGTCACTACAAGTTAGCGGCAGTGTAACCATCATTTCCATGATTACATTAAATTTCTAGTATGCTTT
CDS sequence (LotjaGi2g1v0106500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTGAGTTCAATTTTTTGCTCCACTCGCCTCATTTCCACATCCCTTGTCACTGTAAATTCAGCTTCACACACTTG CTATGTTCCACACAAGCAACGCAAGAGTGAGTTTCCACTCCCCGCAGTGGCTTCAGTCCCTTACCAACCCATCAACTATG ATTATCTACAAGAGGAGTTCAATGGACTTGGTGTCACCTTTGAAGAAGCTGGTGGTGACAGTTGCATGGCAAAGATGGAG TTGAAAAATGGAAGCACTGCAACGCTGTTGCTACCAAGTGGGTTGATCACTTCCTACAAGGCCCCCATGTGGCATGGTGG CAAGGTGGAGCTTCTCCACACTGCAGTTTCAGAGGGGGAATATGGCCATGCCATCATCCAAGGAGGGGTGTCTTTAAACT TCAATTTTCAAACCATTCATGATGATGATGGAGAGTCTTGGTCTCCAACTAACTGGGTTCTCCATAATATCAAAGGCAAT GCTGAGGAATCGATTCAGGTAGAATTAATAAACAGAGCAGCAGAGGACAAGATTGGGTTAAAATACATTGTGACTTTGGA AGAAGATGTCTTGAGCTCAGAGCTTGAAATCTCAAACCCAAAATCTTTACCACTTCAGATGATAGGGTCCATCCTGAGTC ATCTGACAGTAAGCACACCAGAAGCTACTTATGCAATAGGATTGGAAAGATCAAATTACTGCATCAAGCCCCCTTTTGAA TCAGGATTTGTTTTGAGTCCTCCAGATTCAGGCCAGGAAGAAGGAGATGGCAAAATATGGAATTCCTCACCACTTAAGCA ACTCTTTCCTCGTTGGGGTGCGAATAGTCAGAACAGCGAAACAGAAGGAAGCCAAGGAGGTATTGAAGAGATCACTGGTG AAGAAATGGAGAGCTACAAGCAGTTAAGAGACAAATTAAGTCTTGTATACACAAATGCGCCTCGAAGCTTTACAGTTATT GATAGGGGTAGAAGAAACTCAGTGGTAATTGGAAGGAATGGATTTGAAGAAACCTACCTCTATAGTCCTGGCTCAAGAGT TGAAAGTTACAGCAAGGATGCTTACATATGTGTTGGCCAAGCTGCGGTCCTCCAACCAATAGTACTAGGTCCTGAAGAGG TATGGAAAGGAGGGCAGTATCTACAGAATCCAAATCTATAA
Protein sequence (LotjaGi2g1v0106500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSSIFCSTRLISTSLVTVNSASHTCYVPHKQRKSEFPLPAVASVPYQPINYDYLQEEFNGLGVTFEEAGGDSCMAKME LKNGSTATLLLPSGLITSYKAPMWHGGKVELLHTAVSEGEYGHAIIQGGVSLNFNFQTIHDDDGESWSPTNWVLHNIKGN AEESIQVELINRAAEDKIGLKYIVTLEEDVLSSELEISNPKSLPLQMIGSILSHLTVSTPEATYAIGLERSNYCIKPPFE SGFVLSPPDSGQEEGDGKIWNSSPLKQLFPRWGANSQNSETEGSQGGIEEITGEEMESYKQLRDKLSLVYTNAPRSFTVI DRGRRNSVVIGRNGFEETYLYSPGSRVESYSKDAYICVGQAAVLQPIVLGPEEVWKGGQYLQNPNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 386 | 364 | - | – | |
| PANTHER | 30 | 385 | 356 | 1.2E-140 | – | |
| PANTHER | 30 | 385 | 356 | 1.2E-140 | – | |
| Gene3D | 73 | 253 | 181 | 2.0E-6 | ||
| Gene3D | 274 | 385 | 112 | 1.7E-10 | ||
| SUPERFAMILY | 295 | 381 | 87 | 7.38E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi2g1v0106500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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