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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0106600 |
| Transcript ID | LotjaGi2g1v0106600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ARM repeat superfamily protein; TAIR: AT1G54385.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q93ZH1|TORL4_ARATH TORTIFOLIA1-like protein 4; TrEMBL-Plants: tr|K7MHI2|K7MHI2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0106600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:36175248..36178901) extracted from Lotus japonicus Gifu genome v1.2.
GTCGTACTTTAAAAAAAACAAAACATTCAATTGAATTGGATTGAAATTGATGCAGTCATGAAGGGAAAAGGATTTTTCTT TCTTGAAACTTGTAGAGCCCACCACGGAAAGGATAGCGGTAGAATTTGGAAAAAAGAATTTTGAAAATGAAAGCGCTTCA AATTCAATTGAATTGGATTGAAATTGAAAACACAACCCCTAAAAATACGCTCAAATTTGAATAGCTGAAGGAAACATTGC TATTGCTTCCTTCTCTCTCCTTAGTTCTTACCTTACCCGCACACTCATCTTCTCCCTTGGTGTTCCTCGTTGCTGCATCT CCTCCACCCCCAACTAAACAATACACCTTCAAGATCTTCATTCCTGCCCAAAGGTGTAGTTTTTATTTTTCTTCTTCTTG TTATTAATTGCTTGAATGATTCAACAGCATAAGGGGAGTTACTAGGTTTTTTCATTGGATTGTGAATCTTTCAATCGTCT CATTTGCAAGGTAATCGTTTATTCATTCTTATTTCGAAGCAAATGTATCAACTTCAGCTCAAATGATTCGATTTGCCATA TTCTTGTCTAGTAAAACAAGCAACTTTAATTCAAATCGTTAAATAAGTAATTGTGTAGGGGTGAAGAAGGATTTTGAATT TGTGCAATAGAAGATTACCCAGAATGAGAATGACATGAATTTCGTATATTTGGTCATGGTGCGTGCTTTGTATTTGACTT CGTTACTGTTACTTATGGTGGTTTGTTCTGGTTTCAGTTCAACTATGGGAAGGAGTCTGACTCCAGTGCTACAACGAGAG CTTGAAAATCTTGACAAAGATGCAGATAGTCGCAAATCTGCAATGAGAGCATTGAAGTCATATGTGAAAGATTTGGACTA TAAGACAATTCCTATCTTTCTTGCACAAGTTTCTGAGACCAAGGAAACCGGTACTTTGTCTGGAGAATTCACAATTTCAC TGTATGAAGTTCTTGCTCGGGTTCATGGTGTCAAGATTGTTCCCTTGATAGACAGCATTATGCAATCCATAGTTCAAACC TTAGCTTCAAGCGCAGGGTCTTTCCCTCTTCAGCAGGCTTGCTCAAAGGTGGTTCCAGCTGTAGCAAGATATGGAATTGA CCCCACAACCGCAGATGAGAAGAAGAGGAGCATAATTCATTCTATTTGTAAGCCTCTTTCTGATTCTCTTTCGAGTTCTC AAGAGAGTTTGAGTTGTGGCGCTGCACTATGCTTGAAAGCTCTTGTGGATTCAGATAACTGGCGGTATGCTTCAGATGAA ATAGTCAACAGGGTTTGCCAGAATGTTGCTGTGGCCTTAGAGGAAAAATCCACTCAGACCAATTCTCATATGGGTCTGGT TATGGCGTTAGCCAAGCGTAATGCTTTGATTGTTGAGGCCTATGCTAGATTGCTCATACAATCCGGGCTGCAAATACTAC ATGCCGGTGGTGAGCTTCTGGAGGGCAATTCCCAGAAGCGATTTGCAGCCATTCAAATGGTGAACTTCTTGATGAAATGT CTGGACCCCAGGAGCATTTTCTCAGAGGCGGAACAGATAATTGAGGTGATGGAACTTTGTCAATCTGACAAAATGGCATA TGTCAAAGGTGCTGCTTTTGAAGCTTTGCAATCTGCCAAGAGAATTGCCATTGACAAAAAAACCAAATGTCTAAAGAGTC CTGCTGCAGTGACAGGGTCAAATTTTAGTAGGAGAGACTATACGGAGGGAGGAAGTTTTTATGGTGATGGAGACCATTCT CCTACATCCATGTCACCGGAGTCACGTACCTTCGACTTTTTCCCTGGATACGAGTCCCTTGTTGAGTCTCCCTTTTCAAC AAGTGACCCTTCTCAGAACTTTAACTATGCGCGAAGGAGTGTGAATAGGAAGCTCTGGAGCCATGAAAATGGAGGGGTTG ATGTCAAGGATGGTTTATTCTCAAAGGCAGGGCAGGGAAATGGCTTGTTAGGGCACGCTGTGGATCACGAGTTTCCTAAT GGAGGAGGAGATTTAGCAGAGGAATTTGATGGTTTCTTGCTCAGAAGTCCTAGGCGTGGAGTATCCGAAAGTACCAGCAC AAGTCCCCTAGTAAGTCTCAGATATTAGCCCTATTCTATTAAAATTCTGGGATTGAATTTGCATGTTCTATTGGGACAGC TTTACTGTCCTCAACTCAGTTTAAAATCAACAAATATTCATTTCCAAATTTGTTCATTCCCCTCCTCTGTTGACATAAAA TGGTTGCATGCCAAATTCATTAACCAATTACCAATAGAACTATAGATTTTGGAGATTTTTTCTTCCATTTCCAAATCCTT TTTACTTTCAGAAGTAGTGCTCTTCTCTGTGACGTTCGGTACTTCTAAGTTTTTCACTTGTAAGATGTTTCTGGTTTTGG TTTTGTATTTTAATTTTGATTTATGTTTCCTCCTAATGACTTGTTTAGGTTCAATTAATGTTGCACTTGTTTTGTTATTA ATGCTTAGATAATGAAGACTCTTCTCTGCCCATTTATTTTCGAAAGTTATAATTTGAAGGGAAAAAAAAAAGAACAGGCA GAAAGAACATACTTTTGAGTTTTGATCACGATACACACATTTTCTCTCAATTTTATTTGTCTTGCATCTACGAAGCATAA TATTTTTTATACACCATTGGCAAAACTTGAATGCACACTAGTAATTGGCATAAACTTAAACTTCATGGAGAACTTATTTT TAGTGGTCTATAAAATCTGCCAATTTTAGGGTAGTACATCAAGTAAAATCACTCTTTTGCGAACCAAAACTTAATTAAAA TTTGTCTTCTCTCTTCTCAGAGATCACGCTCCCAGGTTAATGTTGACACCATTAAAATCTTTACAACCCCAAGGAAGCTG ATCCACTCTCTTCAAGACCTAAATGATGAGACCTCAGATTGCTCTGAGAATCTGAATAAAAGGATAAGGAATCTATCATC AGGGAATATTAAGTGGAATCCGGCATGTTATTCTAAATATGATAAAAATGGTATTGCAGATCATGTGAACTATGATTGTA AAGAGAATGAAAGCTCATGTGGTGATGTGCAGTTCCAAGGTGGACCGGAGTCGGTCTCATCAACAGATGAACTTCTTGGT GATGCTGATATGCAAAGTAGAAATGATATTTTAACTGTTTTGATGGAAAAGCCAATTCAAAAGGCTAAACGTAAATTGGT TTGTGGCCTTTCTTTTGTCATTATTGCTATGGCTACTCCTTTACTCTGGATCAATAGTCAGGAAGAAGGCCACTTTCTTG TCCCGACATAATGCGCTCATTGTATTTTTACAACCTGAGAATTACAGAGATAGTTTTATGAAGGTATTAGTCAATTCCAA CTGAATGTTGGAAAGTTCAGTGTAGAAGTGAAGGATCAGTTTGTATGTTCAAGGCGCTTTTGTATTTCTTTTAATTAGTC TGTAAGAATTTGGGATTGAATTGTACCTTCTGGTGGGTTGAAAACACAAATGCTGCATTTGGAATTTGATGGGGAGTCAT TCCAATATGTTCAATCAAATTTAAGACAGATCATCTATATATTGAGACTAGAGGTTATATGTATTTTTTTTTATTATCAT GTAATGTCTGATGTTATTAGGTTTTAAAGTTATAATGGCTATAGTGAATTTAGC
CDS sequence (LotjaGi2g1v0106600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGAGTCTGACTCCAGTGCTACAACGAGAGCTTGAAAATCTTGACAAAGATGCAGATAGTCGCAAATCTGCAAT GAGAGCATTGAAGTCATATGTGAAAGATTTGGACTATAAGACAATTCCTATCTTTCTTGCACAAGTTTCTGAGACCAAGG AAACCGGTACTTTGTCTGGAGAATTCACAATTTCACTGTATGAAGTTCTTGCTCGGGTTCATGGTGTCAAGATTGTTCCC TTGATAGACAGCATTATGCAATCCATAGTTCAAACCTTAGCTTCAAGCGCAGGGTCTTTCCCTCTTCAGCAGGCTTGCTC AAAGGTGGTTCCAGCTGTAGCAAGATATGGAATTGACCCCACAACCGCAGATGAGAAGAAGAGGAGCATAATTCATTCTA TTTGTAAGCCTCTTTCTGATTCTCTTTCGAGTTCTCAAGAGAGTTTGAGTTGTGGCGCTGCACTATGCTTGAAAGCTCTT GTGGATTCAGATAACTGGCGGTATGCTTCAGATGAAATAGTCAACAGGGTTTGCCAGAATGTTGCTGTGGCCTTAGAGGA AAAATCCACTCAGACCAATTCTCATATGGGTCTGGTTATGGCGTTAGCCAAGCGTAATGCTTTGATTGTTGAGGCCTATG CTAGATTGCTCATACAATCCGGGCTGCAAATACTACATGCCGGTGGTGAGCTTCTGGAGGGCAATTCCCAGAAGCGATTT GCAGCCATTCAAATGGTGAACTTCTTGATGAAATGTCTGGACCCCAGGAGCATTTTCTCAGAGGCGGAACAGATAATTGA GGTGATGGAACTTTGTCAATCTGACAAAATGGCATATGTCAAAGGTGCTGCTTTTGAAGCTTTGCAATCTGCCAAGAGAA TTGCCATTGACAAAAAAACCAAATGTCTAAAGAGTCCTGCTGCAGTGACAGGGTCAAATTTTAGTAGGAGAGACTATACG GAGGGAGGAAGTTTTTATGGTGATGGAGACCATTCTCCTACATCCATGTCACCGGAGTCACGTACCTTCGACTTTTTCCC TGGATACGAGTCCCTTGTTGAGTCTCCCTTTTCAACAAGTGACCCTTCTCAGAACTTTAACTATGCGCGAAGGAGTGTGA ATAGGAAGCTCTGGAGCCATGAAAATGGAGGGGTTGATGTCAAGGATGGTTTATTCTCAAAGGCAGGGCAGGGAAATGGC TTGTTAGGGCACGCTGTGGATCACGAGTTTCCTAATGGAGGAGGAGATTTAGCAGAGGAATTTGATGGTTTCTTGCTCAG AAGTCCTAGGCGTGGAGTATCCGAAAGTACCAGCACAAGTCCCCTAAGATCACGCTCCCAGGTTAATGTTGACACCATTA AAATCTTTACAACCCCAAGGAAGCTGATCCACTCTCTTCAAGACCTAAATGATGAGACCTCAGATTGCTCTGAGAATCTG AATAAAAGGATAAGGAATCTATCATCAGGGAATATTAAGTGGAATCCGGCATGTTATTCTAAATATGATAAAAATGGTAT TGCAGATCATGTGAACTATGATTGTAAAGAGAATGAAAGCTCATGTGGTGATGTGCAGTTCCAAGGTGGACCGGAGTCGG TCTCATCAACAGATGAACTTCTTGGTGATGCTGATATGCAAAGTAGAAATGATATTTTAACTGTTTTGATGGAAAAGCCA ATTCAAAAGGCTAAACGTAAATTGGTTTGTGGCCTTTCTTTTGTCATTATTGCTATGGCTACTCCTTTACTCTGGATCAA TAGTCAGGAAGAAGGCCACTTTCTTGTCCCGACATAA
Protein sequence (LotjaGi2g1v0106600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSLTPVLQRELENLDKDADSRKSAMRALKSYVKDLDYKTIPIFLAQVSETKETGTLSGEFTISLYEVLARVHGVKIVP LIDSIMQSIVQTLASSAGSFPLQQACSKVVPAVARYGIDPTTADEKKRSIIHSICKPLSDSLSSSQESLSCGAALCLKAL VDSDNWRYASDEIVNRVCQNVAVALEEKSTQTNSHMGLVMALAKRNALIVEAYARLLIQSGLQILHAGGELLEGNSQKRF AAIQMVNFLMKCLDPRSIFSEAEQIIEVMELCQSDKMAYVKGAAFEALQSAKRIAIDKKTKCLKSPAAVTGSNFSRRDYT EGGSFYGDGDHSPTSMSPESRTFDFFPGYESLVESPFSTSDPSQNFNYARRSVNRKLWSHENGGVDVKDGLFSKAGQGNG LLGHAVDHEFPNGGGDLAEEFDGFLLRSPRRGVSESTSTSPLRSRSQVNVDTIKIFTTPRKLIHSLQDLNDETSDCSENL NKRIRNLSSGNIKWNPACYSKYDKNGIADHVNYDCKENESSCGDVQFQGGPESVSSTDELLGDADMQSRNDILTVLMEKP IQKAKRKLVCGLSFVIIAMATPLLWINSQEEGHFLVPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 598 | 598 | 9.5E-220 | – | |
| Phobius | 1 | 567 | 567 | - | – | |
| PANTHER | 1 | 598 | 598 | 9.5E-220 | – | |
| SUPERFAMILY | 11 | 289 | 279 | 1.06E-10 | ||
| Phobius | 568 | 586 | 19 | - | – | |
| Phobius | 587 | 598 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0106600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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