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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0115600 |
| Transcript ID | LotjaGi2g1v0115600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor, putative; TAIR: AT4G01250.1 WRKY family transcription factor; Swiss-Prot: sp|O04609|WRK22_ARATH WRKY transcription factor 22; TrEMBL-Plants: tr|K7MHZ9|K7MHZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0115600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:42712397..42713473) extracted from Lotus japonicus Gifu genome v1.2.
TAACAAATGATATGTGGGCATGGAGAAAATATGGACAAAAACCCATCAAAGGTTCTCCGCATCCAAGGTACACATACGTT ATTGAAACTCTCACACATTTAAATATGAAGATGCAATATAGTAGTAATATCTGAGAAAGTTGTCATTTATTTCAGGAGTT ATTACAAATGCCGCAGCATGAAAACATGTGACGCGAAAAAGCTAGTGGAGCGAAGCAAGACAGACTCGAGCATGTTTATT GTGACATACGTCGGGGATCACGATCACAGGAATCCGCCTCACCAGAACATGCTTTGCGGCACCTCACGGCTCCATCCTTT AGCGACCCATTTACCCAGCACATCGCAAACCAAGACACCCACCAACATTGGAAGCGTTAGTTTATCTGCTATTTCTCCCA TGCTGGTGTCAGATCTGCTGGAGAACGGTGACAAAATAGTAAATCATGGAAAACCTGAAGGCCCTGACCCGAGAATAGAA CCTAAGCCAGTCACCGATGATGATGATGATGACATTCTAATACCCATATCAGATCTGCTGGAGAACGGTGACAAAATGAT TAACCATGGAGTACCTGAAAGCCCTAACCCAGAAATGGAACCTAAATCAGTCTCCGATGATGATGATGACATTCTAATAC CCAATTTAGCTGCCATGTCTAACATCTTCGAAATGGGATATCAATCTTTTGACGTTAGAGCCATCTACATGGGCTAGTCA GATCCTAATTGAACGCAGTGGTTGATCTAAATCATTGGTCTTGGCTCTTTAAGTTGTTCTGCTCATCATCCCTTACAGAA GTTCTTCGAAGTTTTGGATTTTTCTTGTTTAAGGGAGGAAGTCACCTTAAAGGGTAAAGTAAATCATCAAAATCATTGGT TCTGACGGCTTACTTTAATGATTTTAATGACTTACTTTTCTTTCTAAAGTGTTTCACTCACATAAGAGGAGTCAAATCTA TTTATCTTCTTAATTTGAATAGTTTATTTCTTAAATTATATAGTGTTGTTTTAGTTTGACAAATGTGTCCTCCATCAAAT TCCATATATTATGCTCAAGATGTTTAGGATTATAGAG
CDS sequence (LotjaGi2g1v0115600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGCATGGAGAAAATATGGACAAAAACCCATCAAAGGTTCTCCGCATCCAAGGAGTTATTACAAATGCCGCAGCAT GAAAACATGTGACGCGAAAAAGCTAGTGGAGCGAAGCAAGACAGACTCGAGCATGTTTATTGTGACATACGTCGGGGATC ACGATCACAGGAATCCGCCTCACCAGAACATGCTTTGCGGCACCTCACGGCTCCATCCTTTAGCGACCCATTTACCCAGC ACATCGCAAACCAAGACACCCACCAACATTGGAAGCGTTAGTTTATCTGCTATTTCTCCCATGCTGGTGTCAGATCTGCT GGAGAACGGTGACAAAATAGTAAATCATGGAAAACCTGAAGGCCCTGACCCGAGAATAGAACCTAAGCCAGTCACCGATG ATGATGATGATGACATTCTAATACCCATATCAGATCTGCTGGAGAACGGTGACAAAATGATTAACCATGGAGTACCTGAA AGCCCTAACCCAGAAATGGAACCTAAATCAGTCTCCGATGATGATGATGACATTCTAATACCCAATTTAGCTGCCATGTC TAACATCTTCGAAATGGGATATCAATCTTTTGACGTTAGAGCCATCTACATGGGCTAG
Protein sequence (LotjaGi2g1v0115600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWAWRKYGQKPIKGSPHPRSYYKCRSMKTCDAKKLVERSKTDSSMFIVTYVGDHDHRNPPHQNMLCGTSRLHPLATHLPS TSQTKTPTNIGSVSLSAISPMLVSDLLENGDKIVNHGKPEGPDPRIEPKPVTDDDDDDILIPISDLLENGDKMINHGVPE SPNPEMEPKSVSDDDDDILIPNLAAMSNIFEMGYQSFDVRAIYMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 191 | 191 | 6.5E-48 | – | |
| PANTHER | 1 | 191 | 191 | 6.5E-48 | – | |
| ProSiteProfiles | 1 | 59 | 59 | 28.151 | ||
| Gene3D | 1 | 60 | 60 | 9.7E-25 | ||
| Pfam | 2 | 57 | 56 | 2.3E-23 | ||
| SMART | 2 | 58 | 57 | 1.2E-27 | ||
| SUPERFAMILY | 2 | 59 | 58 | 4.97E-23 | ||
| MobiDBLite | 113 | 136 | 24 | - | – | |
| MobiDBLite | 154 | 174 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0115600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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