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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0117400 |
| Transcript ID | LotjaGi2g1v0117400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0544 protein C5orf45 isogeny; TAIR: AT1G71760.1 hypothetical protein; Swiss-Prot: sp|Q3ZBG8|MRNIP_BOVIN MRN complex-interacting protein; TrEMBL-Plants: tr|K7K702|K7K702_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0117400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:43118007..43120264) extracted from Lotus japonicus Gifu genome v1.2.
CCATCGTCCCCTTTCAATTTTTATTTTCTCCCTACTGATAACAGAGACTTTCCATCGCATCGCAATTCGCAGACCAAATG TCGTCGTCTTCAATTGTCTTCATCGCCCTCCAATGCTGCCAATGCTCCACCATGCAGGCACTCTCTCTCTCACACACTCT CCCATTCTCTCTCATTATCTGCGTCGTTTCTGAATTTCTGATCCCGTTTCATTGACAATCGCATTTCAGGTGAAGCAGAA GAAGAAGAGCAGCAACAAATGGACCTGCGCGGTCTGCAACCAGAAGCAATCCCTTCGCAAAGTCTTCGCCCAGGGATACC TCGCCAGCGACATCCGCAAATTCGTCCAGACCTTCAACATGTCCCGCAAATCTCTCGATGAGAACGCCCAGTGGACCGTC GCTGAAACCCTAGCTCCGCCGCCGGAACACGACTTCTCAACCAGCCAGGAAAAGAAGCGGACTGATTGGGCCGCGTACCT CGACCGAGACGATGATCATGCTGGCAAAGGAGGCGAACAACAACAACATGGTATAACTCTAGAATTATAATTTGTGATAA CTAAATTTAGGTGTTTAAGCACATGGATGATTATATAATAATTGCATGCTTTTGATAAGAAAGGTAACAACCTAATTATA CTGATATTTGTAGTAGTTTAATTTGGATTGATTAGGTTTTGATTATGGAGGCGAACAAGAACTTGATTTATTTTAAGATC AATTATACAATATACTATAGAATTGTAGTGTGTGATCTTGTTATGGTTAAATTCTAGTGTAACAGATATGGCCATTTATG AAATAAAAATGGATATAAACTGGTTTAAGCCTTTCTAGCATAGTAGTCAATTGCGGACTGCCGCGGATGACCCCCCCAAA AAATGAAATCCCATACAAGGGAAGGCCGCTATTGGCCGCAAATAGCGGGATTTCGCGGCCACGATCCCGTCGTGGCAGGG GTCTGCTACGCCACGCGACAGCGCTATAGCGCCGCTATTGATAACTATGCTTTCTAGTATAGAGTAATGTTTGTTTGACA CATGAAGGATGTGAAGAGAAGATAGTGATAAAGTAGAGGTCTAAAGATGGATGGTCATAATCTTTGTATGATGAGAAAAG GGTAATTGTACTACTAGTTTATTTTCACCATTGTGTTGGACAGGAGAGGATTTTGAACCACTGGTTCTGACTGAGTTGCC AAAGAGTATGTCCAAGAAGCGTAGATCGGTGGAAAATTCAACTGCAGGAGGAGACAGGCTTTTCGAAAGGCCATGTCTCT CAAACAATCAAGGTGAATATTCCTTTATTGTGTGTGTGTGTGTGGGGATAACTTGTAGCTCAAATTGTTTTGACGGTTCT CAGCAAAGAAAACAGGTTTTATGAATTGTAGTTAGCTGGAGACAAAAAATGAATGAAAATCATTGCCTTGTTAAATTTGT TATGCACTTTAATCTACTTGAGCTTTTGGGAGAAACCAAAGTCAAATAACCTGATGCTTTTAATGTTATCAGCAATTCTC TTAAAGCCAATCTGGACTTGTGGTTCAGATGGATGAGTGGTAAGGGACTAAGTGTTGATTCTGAAGATAAATAAATTCTT ACCAGTGTTTTTCTTGCTTAAGACTACAGATTGCTTTGTGATGTTGTAACAGCAGAAAATATAATAAGAAATAAGAATTT TGTTTTATAAATGGGTTGATTTGCATTAACAGTATCTGGACACATTGATGCAGAGGAGCCAATGAAAGATAAGCGAAGAA TTGAATTATTGACGGAAAGCAATACAGAGAAAATTAATAAAGTGACACCAGACACTACGAGGACTCAGAAATGCAAACCA GCAATCACCAAGGGTACCTCCAAATGGAACGATTACTTAGCTGAGGACAATGTCAATGACTGCTTGGAATTTGGATGGAA GGGAGGCTTTAAATTCAAGGATCATTCAGGTCTGTGTAATACTAGTAATAATGTCTTAGAGGCCATGACTGGTGAGCAAA GGGTAGAAGATGATATTCATCCAGATTTTATGTAAATTGTATCATAGACCATTGAGTGCCTATGTTTATCTGCAGACGAG CCTAATTAGAGTAAAACTTTCATTCACCAAATGAGTATAAACAGTACTTCACACAATTTCTCTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTCTTTTTTCTGTAAAGTTCTGGTGTATTGACAGCCAAATATCCCTGTAAACCTCATCTTGTGTGGACAA TCATATATAAAACCTTCG
CDS sequence (LotjaGi2g1v0117400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCGTCTTCAATTGTCTTCATCGCCCTCCAATGCTGCCAATGCTCCACCATGCAGGTGAAGCAGAAGAAGAAGAG CAGCAACAAATGGACCTGCGCGGTCTGCAACCAGAAGCAATCCCTTCGCAAAGTCTTCGCCCAGGGATACCTCGCCAGCG ACATCCGCAAATTCGTCCAGACCTTCAACATGTCCCGCAAATCTCTCGATGAGAACGCCCAGTGGACCGTCGCTGAAACC CTAGCTCCGCCGCCGGAACACGACTTCTCAACCAGCCAGGAAAAGAAGCGGACTGATTGGGCCGCGTACCTCGACCGAGA CGATGATCATGCTGGCAAAGGAGGCGAACAACAACAACATGGAGAGGATTTTGAACCACTGGTTCTGACTGAGTTGCCAA AGAGTATGTCCAAGAAGCGTAGATCGGTGGAAAATTCAACTGCAGGAGGAGACAGGCTTTTCGAAAGGCCATGTCTCTCA AACAATCAAGAGGAGCCAATGAAAGATAAGCGAAGAATTGAATTATTGACGGAAAGCAATACAGAGAAAATTAATAAAGT GACACCAGACACTACGAGGACTCAGAAATGCAAACCAGCAATCACCAAGGGTACCTCCAAATGGAACGATTACTTAGCTG AGGACAATGTCAATGACTGCTTGGAATTTGGATGGAAGGGAGGCTTTAAATTCAAGGATCATTCAGGTCTGTGTAATACT AGTAATAATGTCTTAGAGGCCATGACTGGTGAGCAAAGGGTAGAAGATGATATTCATCCAGATTTTATGTAA
Protein sequence (LotjaGi2g1v0117400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSIVFIALQCCQCSTMQVKQKKKSSNKWTCAVCNQKQSLRKVFAQGYLASDIRKFVQTFNMSRKSLDENAQWTVAET LAPPPEHDFSTSQEKKRTDWAAYLDRDDDHAGKGGEQQQHGEDFEPLVLTELPKSMSKKRRSVENSTAGGDRLFERPCLS NNQEEPMKDKRRIELLTESNTEKINKVTPDTTRTQKCKPAITKGTSKWNDYLAEDNVNDCLEFGWKGGFKFKDHSGLCNT SNNVLEAMTGEQRVEDDIHPDFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| PANTHER | 7 | 257 | 251 | 3.6E-56 | ||
| Pfam | 11 | 102 | 92 | 7.8E-21 | ||
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 263 | 247 | - | – | |
| MobiDBLite | 106 | 167 | 62 | - | – | |
| MobiDBLite | 106 | 120 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0117400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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