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LotjaGi2g1v0123100.1

Overview

Field Value
Gene ID LotjaGi2g1v0123100
Transcript ID LotjaGi2g1v0123100.1
Lotus japonicus genome version Gifu v1.2
Description keratin-associated protein (DUF819); TAIR: AT5G24000.1 keratin-associated protein (DUF819); Swiss-Prot: sp|O31634|YJCL_BACSU Uncharacterized membrane protein YjcL; TrEMBL-Plants: tr|A0A072U8V4|A0A072U8V4_MEDTR Integral membrane protein, putative; Found in the gene: LotjaGi2g1v0123100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:45182991..45191610) extracted from Lotus japonicus Gifu genome v1.2.

AGTCAGGTGATAAACGCTCCAATCATCTCCTATCAGAATCTCCCCCTCACCAATGACCATCTTCGCTGTGCCGGCGGTCA CCCAGTTCTCTCCGCCACAGCCAATACAACCGCGCCACCTGCTACCGCGCCGTCCTCGCCGCACCACCCTCCTCAACCCA CTCCCATTACCAACGCTGAACTCGTTTGCGTCAGAGAAACGTCGTCGTTTGCATCGGAGTGTTGCGGTGGTGAGGTCACA GCTTAGATACCCTATCGTATCGCCGGATGATCATTGGGGAATTTGGTCTACTCTCTTCACTATCGGCGCTTTTGGTCTCT GGTAAGTAATCATTTGCAGTGAAAATTTTCATCCAAATGCATGCAATTGCAAATTTCACATTAGGTTGTGCTAATCAAAC ATGCATAACTGGAGAAACAGATATGGAATCACACTTTTCCTCACTCTTTTTGTTTGGTTAATCGGAAAAAATAAATTGTT GATTTTTCATTTGATAATTAAAAAAGTGATATTTTAGATCTATTTTGTCCGAGAAATGTTTTAATTTCTTAATTTTTTAC CATCACTAGTTATTAAAAAATGTAATTTAATATCACTTGTAATTATGCAAAATTAATTTACTAGTGAAAATGAGTTTCTC GTTATTTGCCTCATTTTAGGCATATTTTTTGAAAAGAAGAAATAAAGTTGAAATAAAATATATTATTGTTATTGTTTGTG AAAATGTGAAAATGAAAAAGGGTGTTAAATTTGGCACCCTAAGCAACCAATTTAACACCCACTTTAAAGTGGTAATTGTC TAAAATGCCCCTTAATTTTAGAGGATTTGTAATCCCGGAACTCATGTTGAGTAGCATTCTGGGAATTTAAATCCTGCTCA ACATGGGTTCCAGCGGTGTAAAATGCCTATTTTTGTGTTTCGGGAAATAAATTCCGAACTAAAATTCAACATTCAACCTC TTGTGTTCAGAAAAATGTCGGGTATTTTGGGGTTTTAGAAAATTACTTGGGGTGGGAAATTTTATGGGTGGGGTGTTAAA TTTAACACCCATGAAAAAAATGTTTTCTTGATAGTTTAATAACTATATATTGAGAGTGATATTCACTCATATTCCATAGT TTGATCACATCATGATTGAATTAAAATATAGAAGACTGAAAAGATATGATAGGAAAATATGATTGGAAGTCTGTATAAAA CTTATTAAATGTTTATTTTTAAAACAGGGTAGACCCTCTTTTTGTTCTGTTTCTTATTTATAAAAATGAGTACCAGAAAC AGTAAAAATAACATTTTGTTTCCTGTCACCAACAATGCAAGTGATAGCTCATGCTTCATGTTACAAAAAGAAATTGAACT TAGGGGCAAAGGAATATGAAGTTCAAAATTACTTTCACTATATGACACATTCTTTGAATGCCATTGCACATAGAAAGATA GGTAATTTTGTTCTAGTAAGGCATCTTCAGTGACAAAGTAAATGAACATGTGTTTATGTTAAATACAAGGTCAGAGAAGA CCAAGATTGGGAGCATGGTGAGTGCTGCTCTGGTGAGCACTTTAGTTGGGCTAGCAGCAAGTAATCTAGGGATACTTCCA CACAATGCGCCGGCATATTCTATTGTCTTGGAGTTTCTGCTACCCTTAATTATTCCATTGCTGTTGTTTGGAGCAAACTT GTACCAAGTGGTGCGTTCAACTGGGACACTTCTGTTAGCTTTCTTACTTGGGTCAGGTGAAACTGATAGGAACTCATGCA TCTCTAATAAACATTACCATTACCTGAGATTCTGCTTTGTTTTTTTTTTTTGTGGTTCTTGGAAATTTGAGAATGGTTAT CTCAAATGACAAATGGTCATCCTTTTAGGACTGTTAATAATAGGAATAGGAGTACTAGTTATGCACTTTTTTGACATTTA TATGACACGCTTTCTATTTATCCATGTAAAGATTTACCAAATAAGAGAGACTGTTTGGGAATTCGTTGAAAACCACGGTG AATGCAAAATCGTGTGGACAGATGCAAAAGCTACAGGAAGTTTCTTCTATCCACCATGATTTTGGCTTCAACGTTGTTTT TGGACGAGTTTCCACACATGCTCAGAGTCTATTAGAAAGAGTATGTTGCTAGTAGTAGATCTCTTGTTAATGGTTTGCAG AAAAAGTGAAATTAGAAAATAAAAGATAGAGCATGAACAAGATTATAGTGGATGGCACAAAATAAGATAGATTGTAGAAA AAGTACCTGGTTATACTTTATATTATGTTTGGAGGTTAAACATCTCAGAATCATTTCTCCCTCTACAAAAGTGAAATTAG AAAATAAAAGATAGAGCATGAACAAGATTATAGTGGATGGCACAAAATAAGATAGATTGTAGAAAAAGTACCTGGTTATA CTTTATATTATGTTTGGAGGTTAAACATCTCAGAATCATTTCTCCCTCTACAAAAGCTTCTCGTGATAGTTTCTCACAGA ATTACTTCTCTTTCTAATGTGAAAACCTACCAGGTTTCCAAATACTCACTTAGTAAGTGGAAAGTGGGAAAATGGAAAAG ATAGGATTTATGAAAATATAGGACATGGCCAACATCAACCCACGAAGGCTGCACATTCAAAACCTTGATAACCATTTTGT AGCTTTGTTCTTCCTTGCAGTCCTTTATTTTTATTGTATTCTAATTATATAAAATTCAAAATGTACCCTTCTCTGTTATT TGAGAGAATGAGCTAACTCATTTTACTTTTTAATCACTATTATCATTGTTATTTTCTATATTTCCACAGCAAAAGAAGGA ACAGTTATACTTTCATCATTGAAAGTGAAACTTATGCATGCTATCACGTATGATGCTCTCTATGAGAAATTTTCTGTTTG CGTTTGTAATTATTTTTTGATCTTGTGGATGGCAGTTGCTTCTGTTGTTGGAACTCTAGTGGCATTTCTTTTAGTGCCTA TGCGATCTCTTGGTCCTGACAACTGGAAAATAGCAGCTTCTCTCATGGGTAGCTACATTGGCGGATGTAAGTGATTTAAC TAGTTTCTGCATGCTTACTTGTAGTTTGTGATAATTAGAAGTTTATTGAATTCATTGCTGTGAATATGAACAATCATCAA CTCTAATTGATGAATTAATGGTAACAGTGTCGCATTATAACTGTAACAGCCCTTTGGATTTATATTCTTTTTCATTTTAT CTTTTGTGATGGGATTCTTCGATATTACCTTAAAACAGATTTAACATGGCTAGATTATCCTAAGAACTTTTTTTTTGTTG CATTACAGAGGTTTGTTTTCACAATAATACATGCCAATAACCAATAGTGCAATATTTGCCTGGCAAGACATTATTAGCAC CCTACTAGCTAGTCATAGCTTTCTAAAGTCCTCAGTATGGTTAATCAAAAGACAATACACATAAACTTGCAATAGCCCTT TCTTTGCTCCTAAATTGGGTGAGTTGCGAGTACAAAAGACTAGGCACATGTTTGGTTCAGGTTTCTTCAAAAATATTTGT TTGTTTTTAAAGCGTTTTCATTAAGCATTGAAAAAAAAAGAAAGTGAATAAGCTAATCCAAACCAGTATGCTAAAACGGT AATAGTTGATGCCTTAAAAGTTTGAATCCATATATCCTTTCTGGCAACATGATGGATGGTTAGGTTGCATAGAGTGAGTG TGATGAGTTAGTTTTCAGTAGTTAAATTGCTTTAAACGTGTACATTGATTTTCAAAACTATACTGTAATACCTGAACCAA TTTCCTTTGTCCTTTTCATGTTGATTGCTGTAGCCGTTAATTATGTTGCCATTTCAGAAGCGCTAGGTATGTCTGCATCA GTTTTAGCTGCAGGAGTGGCAGCAGATAATGTTATCACTGCTCTATATTTTATGGTATTGTTTGCATTGGCTTCAAAAAT TCCTGCCGAGGCTGCAGCGCCAACCACTGGTACAATTTCTCATTCTTGTTACGTCCAGTTTGGCTGGATTATGAACATCA ACTTTATTCCTGCTTTCAGATCCTGAAACAATATTCTAATATAAGCTGTTTTCCATTGCTTTTACTGAGCTTGAACCAGA ATTTGTGGAATCAATGTTTAAAATCAGTTGGTAGAATCAATAGTTGTAACTCAATATTTGGTCGTATGTGCTATTCAACA AGATGATTACAATGTTGCAATCAATAGAAGAAGGAAGATTTATTTCAACTGTGCATGTTAATTGGTTTTCGTAAGTTGTC CTGAGGAACAGCACCAACATATGTAGATTTTTTCCAGTGTGGGAAATAATTAATTTTCATGTTAAAGAAACACATGGTTT TTTTCCCTTTTGGAATCCAAGGACCAGTATAACCTGTCAAAACTCAAAACTATGTATTTTCCATTTTAAAAATTATCATG AACTATTTATCTCAAAAGCTTAAGTGATTAGGTGAAGACACTTGTAGGGTCACCTACAATGTGCCGAAATTCAACTTTTT TTTATAAAATAGTGAGACAACAATGATCAAACTCTAGATCACTTAATCTAAGGGGCTCTGGTAACATGTCATGAAACAAC TATCCAAAAAGCTTAAACTATTGGGTGAAGACCATGAATAATTTTATATTACACTTCAAACAAGACTTTTCCTATAAATT TAAATCAACAGACATTGTCTTCAAATTATTAAAACCAATTCAATAAGGAGAAAAAGGCAAAGTTGTTAAATTTACCATAT TAGGAATCAATCTTTGCAATGCAGCAGCCTAGTCCCAAATGCAAGATACCTTCGATCTTGAAAGGAGTTAGTAAAAAAGG GAGTAAAATTCATTATATATGAGAAGTTATGGGAAACTGCTGCAAATTTATGCAGTGAAAGCAATAGAAATTCAGGACCA TGGCGTAATTCCTTTTTGTTGATTATGTATGTTTTATAAAATTTTCTATTCATTAACGATATATACATTCTCATAATAGA AAATTTAGCTTGACTTTATGGGTAAATGGCAGATGATAAAATGGATATGGAGTCGGATAACGAGGGCAACCTCCCTGTGT TGCAGACGGCTACTGCACTTGCTACATCTTTTTTGATATGTAGAGCGGCCACATATGTAACAAAAGCATCTGGCGTACAA GGAGGAACCCTCCCTGGAATAACTGCAATCGTAGTCATTCTAGCCACACTTCTCCCAAGGCAGATTGGTCCCCTGGTACC TGCTGGTCATACTGTTGCACTGGTTTTGATGCAGGTAACAAAAACTTTGGAGGCTAATTTTGCTTCACATTGTTTCTGTA GATAGCTGTAGATGTGCGTATATTTCATGATCTCGAGTTATCATGTAAATTCTTTATTTTAAATCAAAATTATAGTAATG CTTTGGAAGTGTCTTTTTTCATGTGTGGTTGATGTATAGTACTAGTAGAAAAAAGGGGAAGCAGTAAAATTTTCGGTTCC AAATATTTGGGTATACTGGACTTAAGGTTTGTGGTGATTTGGATCAGGATTAGATAAAGGGTAAAGAGTTTTGGAAACAG GCGGACTGAAATTTTATTAGGCTGTTTTTTAGTTGATAATAGTGTTCAATTTTAAATAGAAAAAATAGAAAGTGAAATCA GATATGTTTTTTGGGGCTACAAAGTGATAAATGTTTGATTCCCTTTAAGCAATGTCTGAATATACAAAGTATGTCAAGAT TGATCTTTAAGAAACATAGATTTATACCTAAAGGCTCTCTATATTTATGATGATACAAGAGCTTACATGGCTATGTTTTC AAGTCATAACATTTCAAGTCACTTATTGTGTATTTGCTTTCTTGTTAGAGAATTTTATTGTAGAAATACATTTCTGTTTC TCAAACATGAATCTGTGGAACTCTTGCCCACTATTTTGAACGGTTCTCAAAGAGTCACTAAATAACATGTTTCCCAGCAT GGCATGACAATGAGGTGTATAGTTATCATGGAATAGGCTCGTACCCAAACTCTGAATATTATATTGAATCTATATAGTGC CCAATGATGGCTCTATAGATCTGCTTAATTTCTTTTGTTTTCTCTAGGGATCAGATGCTTTCTATTCTCTTCCATATCAC ATTGGTTTGTTTGGAAGAGTTTATTTGTCCCAACTTATAGAAGCACACAAACAAGTTTCTCGTTAAACTTATAAAAATAG CTTATGACCTACATATAAGCTCTTTTAAGCTTATTTTGATAAGCTTCTCAGAATAGCTCATGAATAAGCTATTATACATT TATACCTACATAAAAGCTTTTTTTAGCTTATTTGAATATGCTTCTGAAGTTTTTTATTAAAATAAGTTCTTAGTTGTTTA CTCAAACACACCCACTATATTATTTGAAAGAAATTCCATAAGCCAAGTAATACTCTTTCGAAATGATATTACTCTTTCTA ATTGATATTCTATGAAAATTTCATCATGTGACCTCGTGCTACTTAACATGTTTTTCCCAGGTATTTTTTGTGGTGGTTGG AGCTTCTGGAAGTGTATGGAATGTTATCAAGACTGCCCCGAGTATTTTCCTGTTTGCACTTGTTCAAGTAACCGTCCATC TTCTTCTTGTTCTTGGATTAGGAAAGTTGTTCAAGTTTGATTTGAAGCTGTTGCTTTTAGCATCAAATGCCAACATTGGG GGCCCTACAACAGCATGTGGGATGGCCAAGGCCAAAGGCTGGGATTCTTTGGCTGTTCCTGGAATTCTTACAGGCATTTT TGGAGTTTCAATTGCAACATTTCTTGGTATTGGTTTTGGAGTGATGGTTCTAAAACACTTGTAGAAATGATTATTTACAA GGTTCAGATGCTAAAATGCTTACAACTAATTGGAAGTTATGATCAAGCAGTTTTAAGGTATCATTTGACATATATTTGCT CAAGAACTTGGTGTAGCTATCTTTTCTTCTCCATCTCCCACACATCGTGCACAAGACTAACGCTCTGTTTGGTAGAGAAG AGAGAAATAGAGAAGAGAGAGTAGAGAAGAGAGAAGATGAGTAGAGAGAAATATGTAAGAAATAGAGTGGATTTATAGGT TGTTTGGTATGATATAAATAGATGAGAGATGGAGAAGAGAGAGTAAGGTGGAATGTATGAAATGTCTTTTTTATCCTGAA TTTAAAAATATTAAAAACTGAATGACTAGAGTGGTGTAATTGTTTAAAGCAATGGTATATTTGACAATTAATGGTCTGCA GCCCAAATCTTCTCAATTTGGAGAAATGAAAAAAAGTAGGTGGGACCCACAATTTATATCTCTCTCTACTCTCTCTTGTT GATATCAAACGCAGGTAGAATCACTTTCTCTTTGCTAACTCCATCTGCAACATCTCTCTCTTGCCTATTTCTCACCTAAC AAACAAAGTGTAAGTGAGTGTTTGGATACTAGTTGAACGCAATGTGAACGGGCTTTCATTATATCCCAGTTCATAAGAAA AGTCTGATTCCTTCTTCCTTGTTATATTGAAGTGAGTGCTAACATCCGTTTGCACTGGTGCCAACGGGTATTGAAACATA ACATTAGTGCTTGTTTGCTTTCGCTTCATGCACAAACTCCAGAGCACATTAGGTACAAAGCTGCCTATTATGACTATATT TAATATTTGGATACATGTTGGCATCAGTGTAAACATACATTAGCCCTCACTTCAACTGAAAACGGAATATGGATGAATTG GGATGAAAATCTGTTCATGTTGCACTCAACTCATAACCAAACACACGCTATAGCTTCTCATCAAATGCTGATTTGATTGT GTATCTTGGGCTTTGACATGGTATTAAACATACTATGAGCTAGGTTGCAATTGAACAAGCTTTTTGCTTCAAATTATGTT ACATTTGGCAAGTCCATGACTGTGATTCTAAACACTTAGCCAGCCCACAACCTACCAATAAGTTTTTTTTATGCTATTAA ATCAATTCACATGATATGCTGGTGAAATTTCTACTCCATCTGCTTGTGTATATAGAGCTGGTGAAACTCCTTTGTATCAG CTAGGTTTTTTTTTTCCTTCTATTGAATCAATTGACATTCTTCTCTGTTTTCTGTTTACATTTATTATGGCATCAGTGCC CTATTCATATAGCTCCCTGTTGTGTAAACTCTGATCATGGCAAGAAACTCGAAGAACATTGGTGCTGGTGCGAATTACGA AGTCAATCCTGGAGGATCATCCAACAATGTAACAGATCCTTCATTGAATCCTTTGCGCCCGCACTTTAATCATCCTTGTG ATGGACCTTCAATAGTGGTGAGACACCATAATTAACAAGCGCGGACCAACACATTTAGGCGAGATTGACGTGAAGAGTGT TGAGTGCGAAGAACAAGTTCAAATTTGTAGGCGGAAGCATCATTCAAGTGCCAAACGAGAATCATTCTAGCTATTTAGCT TGGGAAAGGTGCAATAATTTGATCCATTCATGGTAAATGAATTATGTTTCACCTTCTATTGCACAAAATCTAGTTTACAT CAAGTATTTTTTGCGACGACTCCTGAAAGATATTCTAAGAGAAAAACAATGAACTCGCCATTAATATTTATTTGGATTGG GAAAAACATTGAAAAAATCATTTTAAAACAATTTTGGTCAACGTAAATAAAGCAGATTCG 

CDS sequence (LotjaGi2g1v0123100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCATCTTCGCTGTGCCGGCGGTCACCCAGTTCTCTCCGCCACAGCCAATACAACCGCGCCACCTGCTACCGCGCCG TCCTCGCCGCACCACCCTCCTCAACCCACTCCCATTACCAACGCTGAACTCGTTTGCGTCAGAGAAACGTCGTCGTTTGC ATCGGAGTGTTGCGGTGGTGAGGTCACAGCTTAGATACCCTATCGTATCGCCGGATGATCATTGGGGAATTTGGTCTACT CTCTTCACTATCGGCGCTTTTGGTCTCTGGTCAGAGAAGACCAAGATTGGGAGCATGGTGAGTGCTGCTCTGGTGAGCAC TTTAGTTGGGCTAGCAGCAAGTAATCTAGGGATACTTCCACACAATGCGCCGGCATATTCTATTGTCTTGGAGTTTCTGC TACCCTTAATTATTCCATTGCTGTTGTTTGGAGCAAACTTGTACCAAGTGGTGCGTTCAACTGGGACACTTCTGTTAGCT TTCTTACTTGGGTCAGTTGCTTCTGTTGTTGGAACTCTAGTGGCATTTCTTTTAGTGCCTATGCGATCTCTTGGTCCTGA CAACTGGAAAATAGCAGCTTCTCTCATGGGTAGCTACATTGGCGGATCCGTTAATTATGTTGCCATTTCAGAAGCGCTAG GTATGTCTGCATCAGTTTTAGCTGCAGGAGTGGCAGCAGATAATGTTATCACTGCTCTATATTTTATGGTATTGTTTGCA TTGGCTTCAAAAATTCCTGCCGAGGCTGCAGCGCCAACCACTGATGATAAAATGGATATGGAGTCGGATAACGAGGGCAA CCTCCCTGTGTTGCAGACGGCTACTGCACTTGCTACATCTTTTTTGATATGTAGAGCGGCCACATATGTAACAAAAGCAT CTGGCGTACAAGGAGGAACCCTCCCTGGAATAACTGCAATCGTAGTCATTCTAGCCACACTTCTCCCAAGGCAGATTGGT CCCCTGGTACCTGCTGGTCATACTGTTGCACTGGTTTTGATGCAGGTATTTTTTGTGGTGGTTGGAGCTTCTGGAAGTGT ATGGAATGTTATCAAGACTGCCCCGAGTATTTTCCTGTTTGCACTTGTTCAAGTAACCGTCCATCTTCTTCTTGTTCTTG GATTAGGAAAGTTGTTCAAGTTTGATTTGAAGCTGTTGCTTTTAGCATCAAATGCCAACATTGGGGGCCCTACAACAGCA TGTGGGATGGCCAAGGCCAAAGGCTGGGATTCTTTGGCTGTTCCTGGAATTCTTACAGGCATTTTTGGAGTTTCAATTGC AACATTTCTTGGTATTGGTTTTGGAGTGATGGTTCTAAAACACTTGTAG 

Protein sequence (LotjaGi2g1v0123100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTIFAVPAVTQFSPPQPIQPRHLLPRRPRRTTLLNPLPLPTLNSFASEKRRRLHRSVAVVRSQLRYPIVSPDDHWGIWST LFTIGAFGLWSEKTKIGSMVSAALVSTLVGLAASNLGILPHNAPAYSIVLEFLLPLIIPLLLFGANLYQVVRSTGTLLLA FLLGSVASVVGTLVAFLLVPMRSLGPDNWKIAASLMGSYIGGSVNYVAISEALGMSASVLAAGVAADNVITALYFMVLFA LASKIPAEAAAPTTDDKMDMESDNEGNLPVLQTATALATSFLICRAATYVTKASGVQGGTLPGITAIVVILATLLPRQIG PLVPAGHTVALVLMQVFFVVVGASGSVWNVIKTAPSIFLFALVQVTVHLLLVLGLGKLFKFDLKLLLLASNANIGGPTTA CGMAKAKGWDSLAVPGILTGIFGVSIATFLGIGFGVMVLKHL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 74 74 -
PANTHER 43 442 400 5.1E-224
PANTHER 43 442 400 5.1E-224
TMHMM 74 91 18 -
Phobius 75 91 17 -
Pfam 80 440 361 1.7E-114
Phobius 92 97 6 -
TMHMM 96 118 23 -
Phobius 98 119 22 -
Phobius 120 124 5 -
Phobius 125 145 21 -
TMHMM 128 150 23 -
Phobius 146 156 11 -
Phobius 157 179 23 -
TMHMM 157 179 23 -
Phobius 180 190 11 -
Phobius 191 208 18 -
Phobius 209 219 11 -
TMHMM 219 241 23 -
Phobius 220 242 23 -
Phobius 243 267 25 -
Phobius 268 287 20 -
Phobius 288 298 11 -
TMHMM 293 315 23 -
Phobius 299 316 18 -
Phobius 317 327 11 -
TMHMM 325 347 23 -
Phobius 328 351 24 -
Phobius 352 357 6 -
TMHMM 354 376 23 -
Phobius 358 379 22 -
Phobius 380 416 37 -
Phobius 417 439 23 -
TMHMM 417 439 23 -
Phobius 440 442 3 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0123100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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