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LotjaGi2g1v0124100.3

Overview

Field Value
Gene ID LotjaGi2g1v0124100
Transcript ID LotjaGi2g1v0124100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0124100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:45607500..45610167) extracted from Lotus japonicus Gifu genome v1.2.

TTATCGATTGAAAACAATTTTTTGATTTGTGCAGGTTGCAGGGATTATTTTTGCAGTGGTGTTATTGGGGTCACTAGGAG TGAAGGTAGCAGAATGCAGAGTAGTCAGAAGATTACAGGATCTTGAGTACCCTGCTATCAACTGCAGAAAACATAGTGCA GTCTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCTAACACCAAGGCCTTTCAATCTGCAATCAGCAATCTCAG CCACTATGCAAATGATGGCGGGGCTATGCTGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACTAGCC ATTTCACACTTTTTCTCCAAAAAGAGGCTGTCATTCTTGGATCTCAGGTATCTAGTCACCTTCTCCCCTTTTCCTGTGGT TAAATTGTTATATTATTTGGGTCTTTGATTCATTGCATTCGGTGTGACCCTAATCGAAGCCAACAATATCTAATGGCTCA AAGGTTTTTTCAAGATCGGATGACTAATGTGGATCAAACGATTCAAATTTCTTATTTGCGTGAATTTACGATTTTATTCA TTATGGTTACATAATTCCAATCCAATTATAAAAAAAAACACCATGTTGATTTTGTGGTCAATCATGTGTTCTTCATATGA GATGTGAATGAGTAAAAAAAAAAGATAAAATCCGATGTTGTTCTTGTGGCCAATCGCGTATTGTCTATATGAGGTGTGGA AAAAAAGTAAAAAAATTATAGTTGTTGACTAATTGAATATGATTTCTTTTTCTTTCAAAAAAAAAAAGAATTTAATGGAT ATGCACTGTCAGTGTAAAATAGTTTTACACTGACATCCAATTGAATTCCGCCAAATAAGCAAATGTGATTTTGTTTTAAT TAAAATTAAAAATGAATGTAACTCTCTTTCCACGTGGCAAAAATTGATTTCTTTTGTGTATTACACATGTCCTTTGCATT CTATTTTACTATGAAAGTAGCATTTATCAAAAGCTATGTAGCATTCGTCAACACAGTGCAATTGATGGAAATTTATTTAT CTAATCACATTTATCTCTAACCTATCTTTGATTTCTGGTCACGTTAGTTAAGCACCATTTGACATCAATTGTTAGTTTTT TTTAATTACTTTTCTCCTAAATAAACACTACGATTGACCATTGACCAACTTTAACAGGTTGAATCAGAGTGGCCCTCACT TCCTGTTCTTCCATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACAAACCTCA CTGATGTTGTTATTACTGGTAAAACTTCAAGGCCCATATACTATCATCACTATCAGAATTTGTTAATTCATTCCCCTTTG GAAAATCATTTTTAATTTCACATGTTTTGAATTTGTTCATTAGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTG GTGGGACAAGTTCCACAAGGGACAATTTACACTCACCAGGCCTTACATGATTGAGATTATGTACTCTAATCAAATTCAAA TCTCGAATCTCACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACAATGATCTTCATGGA CCATATTTTCTGTTATGTTATTCTCATGTTCTTGTCTCACCTTTCTCTGCAGTGACATTATAATTCAAGGGCTGACCATT CTTGCACCAGTTGACTCTCCTAACACAGATGGAATTGATCCTGGTAATATTTATAACATTTCTATAATTATATTATATAT ATTTTATTTCCACTGGATTTCAATTTAGTCCTTAAAAGATGAAAAAAGGACAAAATCCATTTTAGATCTTGAAAGACTAA CTGAAATTTGGTTTCATCTTTCGGCGACTAGTTTCCCTATTTTCTTAGCCCTGATAATTTTCAACGAGTAAAGTTACTAT TCACTTAAATTTCAATCATTCTCTAACTATTTTCCTCAATTTTGCAGATTCTTGTTCCAACACTAGGATTGAAGATTGCT ATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAA CACATAATAATCAGAAGACTTACATGCATATCCCCAGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAAT CCAAGACATTAGAGCAGAAGACCTCACTGCTATCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAG CATATGTGAAGAACATTTTTGTCAAAGGAATGAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGA TCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTACCATCACTGGAATCAATTATAGAGATGTGATTGCGAAGAA TGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGA AAGTGGGAAAGAAATTGGCATGGAATTGCACTGATGTTCACGGTGTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTG CTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCAGCAGACAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTG TTCCTTTAAAAGTTTGTCACTCTTCTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0124100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACTAGCCATTTCACACTTTTTCTCCAAAAAGA GGCTGTCATTCTTGGATCTCAGGTTGAATCAGAGTGGCCCTCACTTCCTGTTCTTCCATCATATGGCAGAGGAAGGGATG CACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACAAACCTCACTGATGTTGTTATTACTGGTCACAATGGTACTATT GATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTACACTCACCAGGCCTTACATGATTGAGATTAT GTACTCTAATCAAATTCAAATCTCGAATCTCACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTG ACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCTAACACAGATGGAATTGATCCTGATTCTTGTTCC AACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGGGATGAGTATGGAAT CAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCATATCCCCAGATAGTGCTATGATTGCTTTAG GAAGTGAAATGTCTGGTGGAATCCAAGACATTAGAGCAGAAGACCTCACTGCTATCAACACTCAATCAGCAGTTAGAATC AAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGAATGAACTTGTTCACCATGAAATATGTGTT TTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCACTTCCTACCATCACTGGAATCAATT ATAGAGATGTGATTGCGAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCTAATGATCCTTTCACTGGAATTTGC ATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCACTGATGTTCACGGTGTTACAAGCAATGT GTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCAGCAGACAAACTTCCCATTG AAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0124100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLVVPPGKWLTGSFNLTSHFTLFLQKEAVILGSQVESEWPSLPVLPSYGRGRDAPAGRFSSLIFGTNLTDVVITGHNGTI DGQGSYWWDKFHKGQFTLTRPYMIEIMYSNQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGIDPDSCS NTRIEDCYIVSGDDCIAVKSGWDEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTAINTQSAVRI KTAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGIANDPFTGIC ISNANIEKVGKKLAWNCTDVHGVTSNVSPEPCALLQEKPGKFDCPFPADKLPIESVQLKTCSFKSLSLF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.160.20.10
1 351 351 6.6E-95
IPR012334
PANTHER
PTHR31339:SF12
2 384 383 3.1E-229 –
PANTHER
PTHR31339
2 384 383 3.1E-229 –
SUPERFAMILY
SSF51126
2 382 381 1.83E-88
IPR011050
Pfam
PF00295
61 342 282 7.1E-39
IPR000743

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004650
Molecular function Polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0124100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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