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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0128100 |
| Transcript ID | LotjaGi2g1v0128100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit tim16; TAIR: AT3G59280.1 Protein Transporter, Pam16; Swiss-Prot: sp|Q93VV9|TM16B_ARATH Mitochondrial import inner membrane translocase subunit PAM16 like 2; TrEMBL-Plants: tr|I3T4E3|I3T4E3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0128100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:46948122..46953167) extracted from Lotus japonicus Gifu genome v1.2.
AGAAATTTCTAAACATAATTTCTTCTCCGAGGGGGGAGAGAATATTTCTATTCTATTATAATCCCCAAATTAGAACCCTA GTTTCCGCCATTATCGCAGTCTTTTCCCTTTCTTCACGTGTGCGAAACGAGCCTGTTCTGTTGTTATTTCACAGGATCGC TCTTCACCTCGCGTCCAAAATCCACGAATCTCTGTTGTTGCACAGAACGCTTTTCTCCTCGCGTAGAAACCCATTATCAC TGTCTTTCCCCATTATCTAAGCTTGTGGATTTGGAGGCTTTCATTTTATTGATTCTCTAGCTATGGTACCTTCACATATC CCTCTCTTGTTCCCATCTTCTATTGTTTGTCTGTTTTTCAAGTGAATTAGATGAATAAGGGCATGCTTGATAATCCTTTG TTGTTGAGCTTTTGTGTATTAAGAAATTTAGAAAATAACCCTTTTGTTGTTTTCTCCATCTCATGAGGTTTGGTTTTAGA ATTTTGAAAACAGATTTTATTCATGTTATGGTAGCTAGATGTTTAGTTTGTGTTTCTTAGCAATTAGCATCATATTAGCT CCTTTTGTATGCTGTGATTACCATTTGGGCATATGTCAGATTATTGGGTGTGTAATAGGTTGAAGACACGGTAGTTAGAA ATCTTTGCATCATAGCTTCTTTTTGATGCATGTGTCAAAAGAAAAATATAAAATTTGATGGAGATGTATTGACTGATGAG GTTCCAAGTGGATAGAAATCTGTTATCAAATGATTGTTGTAGTACAATTAATTTTCTGGAATGTTCCCTATTTCTAGCTA AACTTTGAATGAACTTTATGCAGGCTTCAAAGATTCTTGCTAACTTGATTGTGATGGGTGGGGGAATCTTGGTTAGAGCA GTTGCTCAGGCATATCGTCAAGCACTTAACAGTAAGTTTTCCAAATTCGTGACATTTGCGATTTGTGCTGCTAATCTACT ATTGAATTCCAAGATTGCTAGGAGTTTAGATTAATTGTTGTTACTTCCCACCTCCACCATCATTTTTCACTTAATTTCTA GATATTCAATTGTTACTTCATTAATTTAATAATTTAACAATGAAGTTAGGTGTGTAAAGATTTAGGGGAATTGTAGTTTT TCAGTTTGGCCAACATTTGGTGTGGGATTTCATAGGCTACATAGGGAATGAACCCATTATGGGGCATGAAGTTGAGAAGT TTGAATCATTACATGGGATGAGCATAGAATGATTTTTTGGTTGTGATTGGTTTGCATCCCTATCATATGTGGAACCCTCA CTTCTAGACTATTGAATAGAATCCTTGTTTTGTGGAGTTGATTAAGTAGCAGGTTGTGAGAAGAGCTTAGGAGAAGGATT CCATGGTTCATGTACAATTTTTTTGATCAATTTCCTTTCTTCTTGATTAGTAGGTATAATTGGCTCCTACCTCTTCGCTT TTAGGACATGCTTCGGTAGAATTACTTTTTGGGCTTGTTTGATGTCACGATATGATAAGATCAGATAACATAAGAAAGCT GGATAAGAGGAGGATAAAATATGATAAGTTCCTATTCTATCCGAAGTTTGATGTGAACTAGAAATATGATATGATTGTAC ACATACCTAAATTACCTCAGTGTCATGAATTGAGAAGCCCTCCCCTTGTTTGAGAATATTTTAAATAGGGGAAAAGGGTT TGGGGAATATTTGAAAACCCTCGAAGACCCCTCTAAGACCCTCATTTAGTTATTTGGTGGAGTTCCCTCAAATTGGGTCA TTTGGTAGAATTTTGAACTTCCAAAGTAGGGGAGGGCTTACCCACCCTTCCCCTCAAAGCCTTCCCTTCCCCTCCCTCAA AAACTCCCAAACAAAGCCTAAAAGGAAGTTAGTTGTTGAAGTGAAGAAGTCCATAAAAAGTCTAACTAAGGGGATTCTAG TTCCAAACACTTCCACTGAATTGCATGCAGTAAAGCTAAAAGACTCCTAAAATATTATAAAAACAGAAATCAAAATGTAG AAGAGATCTGGACAGAAAACTAATCCTGCAGTGTATTGACAATATGCATAAGTAATCTCTTTTTAATCCTCCATTGTCTG CCTTTTTAGACAATGGAATCTTGCTCCTATTAGTAATTTGTGATAGTTGGAAATGGTGCAGATAGATTCATGGCCTTTTT GAATAGTAGATACTAGATGTCACTTTCATCCTTTTTTCTCTTTCATTTCAGCAAAAGCAACTTTGACTCTGACCTCTTTG AATGATCTCCTAGTCGGTTCCTTTTAATGCTTTCTAAGTTGCTTGTTGAAACCTTCTAAGTTTGTCCTTCAGCCTGAGAT TCAAGGATCTAAATATGAGCTATGTGAGGATATTCATGGATGGTTGAGATTTTCTCTAGTGGTAAATTCAGCAGAGAGGA TCTGTTCCTATTTTCCATTGGTCATATGAATATCCGCTGATTTGTCAGCTTGTCCCTTACGACGGATATCTTTTTGGATG CAGCATTCTGACAATATTCTTCTGATGTCTTCTAATGAATTGGAGTGCAGTGGCATTTTTTGTATACTTCATCTAGTGGA TGTTGACCTTCTTGCACTATTGATGAATTCTATAAAATAGTTTAATTGCTCAAATGCTTCCTTGTCGCCTCTGCCATATG AAGCTTCCTTGTAGTATGGATGTTCTGAAATAAATGCCTTCTGATGGAGCACCCTTCTGACTTAGCTTTTTAATATGAGG GTTCTCTTCTGATGCTTGCTTAGTTTCAAATTTCAATGTGGTAGGTTCATGTTCATTTACTCCTTTCTTAAGGAATCTCA ACTGCTAACATTAGTTCCATTAGATTCCGAATGCTTGAAGTTTGATCATATAGTTCGTATCATTAAGACTAGCACAGTTC AAAAGGTTCTTTGACTTGATACACATATTTAAGGCATCTTCTCTCTTTACCACATGAACACGGAGGCAATTTTTGACATC ATAATCAGCCCTTTTGTCCTGTGATCCACTCAACTGAAACTTGTTGCATATAAAACATTTCTTTTATCTCCAGAAACCTG TATATATTGGGAAATATATGGAGATTTGTCATTGCCTGAAACATAATCATGTTCATTTGAATTTATTATACTCCTTTATG CTGCAAAAGTCTTCAGAGAATCTTAGGGTCTTTATTGTTAGGCTTTCATAGAACCTATGGATACTGTACAAAGATCTTGC TTTCTGCTGTGATAACACTTCATATTAGTCTCCTTATGTAACACATGCTCTCTGACTTGGTTCTATAACTTAATGGTGTG ACTTATCAATTTTATTTCTCTATACTTAACAAAATTTTGGATATCACCCTTGTTCATAAAGGGTTAACTAGTTTCCTTTC CTTTGGACATTGGGTATTTGTTTTTTCCCATTCATTAGATTTGACTCGAAAGGCTAGCGAACTAAGCTATTCCTTCTTTT CAGTATACCTGCATATACATCAGTGGAGCTTTAATACCCTTGTATTCATTTTCTTCAGGGTGTCCTTTACCTCACCTATA CAGAATTGTTAATGATAAATCATTACTTTCTTAACAACCTTGGTCTCAAAACAGCAATATGACATCTGATACTCACTTGA AAATATACTGAACTAGCTCCTCCATCTTGTCCATGCCTTCTTTGTTATACTTAATTTGTTTTAGGTCCTAAGTCTTTCTT ACTACATGTCTTCTCATTTTCTCAACATTATGTTGTTCCAGATGCGGCGAAAAATGGTGTTGCCCAAGAGACAATACAAA ACACTGTCCGCCGAGTTAGCAAAGTGATGACAGAGCAAGAGGCTCGCCAGATTCTTGGTGTTGCTGAGGAAACTCCCTGG GAAGAGATTCTGAAGGTTAGTATATCATCCGTGCTGTGGTTGCTGCCATTGCCCAATGTTGTTTTAATAATCGCCTAAAC ACAATTTAATTTTTTTGGGCAGAAATATGACAGATTGTTTGAGAATAATTCCAAGAATGGGAGTTTTTACCTCCAGTCCA AAGTCCATCGAGCTAAGGAATGTCTAGAGGCAGTCCACGGCAAGAGTGAGGGTACCCCTAGTTGAGAATTAGTTTTGCTC TATCTTTATACCCTTGTGTAATGGTTTTGGCCTCCTAGTTGTATACTATTTTTTCACTCAAGTTTCTGGAACTAAATTTG TTGCTACTATAAAAAGTTGTATATTATTGGTTGGGAATTGATGGAAAATAATGAACTGAAGCTATGTTATTACTTTAACA GTTTAACGTGGTCAAAATGAGAATTGAAGTCAATAATATTGATGTGAGAAACAACTGCATGTTTTTGAAAACATCATTCT GATGGGCTTCTGCATATTGGGCCAGATATACTAATCCCAGATTGATTAATTTGGGTTTTATTAATTCCAGTTTGTTAGAG TTTTATATCTCTAGAATAGTCCCTCTGTTAAGATTGACCAAATAAGTGGGTTTGGGTGTTTTCTCTGCTCTTTTCCCCCT TCTCTTCCTGCCTCCCACTACCACAACTCTGTCTTCCACCTCCATTGCCGGCCACCGCGCTTCCTTTCCCTACGGTAGTT GGTTCTTCAACGATTGTGGCATTGCGCCCCCACTAAGCCATGTTCATCCCTTGCCTAGATCTCCGTGCATCCTTCTCCAT TGCAATGTTGGTGTCCATTAGATTTCACTCTTCTAGGAACGCCTTCATCCTCCTCTAACTTTGATCACCTGCGAATATTG TCGCTGCTGCTACTGATTCAACCGTGCTACTGGTTTAACCAGAAACTTCTCCTTTCTCCTAGTTTTCAAATTTGCTGGAT GACCCTTGTTTTTTGCAACTGAAGTCTGCACCACTTGCAACACCGGCAGAGCCAGTTGTGTTGTTGCTTTGGGAAGCGCC GATTAAAAAAGATACATCCTAACTGCTTAGAAGTCATTAGCTTTCTGTTAATTTGGATTTTGAGAGGCTTTTGTACGGCT TTTTAGGGTTTTACTTCATGATTTATGCTGATTGTGTAAGCTGAGTGTGTAAGCTGAGTGTACATGTTTGAGCTTCATTT TCTTAT
CDS sequence (LotjaGi2g1v0128100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAAGATTCTTGCTAACTTGATTGTGATGGGTGGGGGAATCTTGGTTAGAGCAGTTGCTCAGGCATATCGTCA AGCACTTAACAATGCGGCGAAAAATGGTGTTGCCCAAGAGACAATACAAAACACTGTCCGCCGAGTTAGCAAAGTGATGA CAGAGCAAGAGGCTCGCCAGATTCTTGGTGTTGCTGAGGAAACTCCCTGGGAAGAGATTCTGAAGAAATATGACAGATTG TTTGAGAATAATTCCAAGAATGGGAGTTTTTACCTCCAGTCCAAAGTCCATCGAGCTAAGGAATGTCTAGAGGCAGTCCA CGGCAAGAGTGAGGGTACCCCTAGTTGA
Protein sequence (LotjaGi2g1v0128100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKILANLIVMGGGILVRAVAQAYRQALNNAAKNGVAQETIQNTVRRVSKVMTEQEARQILGVAEETPWEEILKKYDRL FENNSKNGSFYLQSKVHRAKECLEAVHGKSEGTPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 104 | 104 | 3.5E-20 | – | |
| PANTHER | 1 | 110 | 110 | 1.0E-60 | ||
| PANTHER | 1 | 110 | 110 | 1.0E-60 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 115 | 93 | - | – | |
| Gene3D | 53 | 111 | 59 | 1.3E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TIM23 mitochondrial import inner membrane translocase complex | The protein transport machinery of the mitochondrial inner membrane that typically transports proteins that possess a matrix-targeting N-terminal presequence. The TIM23 complex contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor. | ||
| Biological process | Protein import into mitochondrial matrix | The import of proteins across the outer and inner mitochondrial membranes into the matrix. Unfolded proteins enter the mitochondrial matrix with a chaperone protein; the information required to target the precursor protein from the cytosol to the mitochondrial matrix is contained within its N-terminal matrix-targeting sequence. Translocation of precursors to the matrix occurs at the rare sites where the outer and inner membranes are close together. |
Expression pattern of LotjaGi2g1v0128100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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