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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0132700 |
| Transcript ID | LotjaGi2g1v0132700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-2; TAIR: AT1G76890.2 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2; TrEMBL-Plants: tr|A0A151R8Q1|A0A151R8Q1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0132700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:48084746..48088997) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAAATCAACAAAATTAAAGAAAAATACAAAAAGGCAAAAATATTAACTTCTTGAGATTGCCAGGCAGATCCCACCC AAATAAATTAATAAATTCACCAACACACACACGTTCATACACACACATACACATCTGTGATAAAACCCATCAAATAATTC ACCACCCTTTTTCTTCTCTCCCATTATCTTTTGCCCATATAGTATTTTTTTCTTCCTCTGTAAATTGCTTAGGTTCTGTG CTGTTTTTGTAGGGAACAAAGAGTAGAAAGAGAGAGAGAGATAGGTAGATAGAGACTATAGAGAGTCCTATGCTGGGGGA CTCAGCAGTGTTGGGAACAGCAGGAGGAGGAGGAGGAAGCTCTGGAGATGCAGCAGTGGCAGCAGCTGCTGCTGCAGCAA GAGCTCATGACGGCGGTGATACGGCGGCGGGTGGTGGTGGAGGCGGATCAAATTCAGGGGATGATGAAAGGGGTGACCGG AGCTTTGGCGGTAACCGGTGGCCTAGACAAGAGACTCTGGCTTTGTTGAAGATACGGTCAGATATGGACGTTGCTTTTAG AGATGCCAGTGTTAAGGGTCCCTTGTGGGATGAAGTTTCAAGGTGAGTGTGAGTCATTCATTTTTGTTTTCAATTTTCAT TTTGATTTACCATTTTCACTGTACTTTCTTTTCAGATTTTAATCACCATAATTGAATGCAAGTTTCATCAGCTTTCTTTC TGAGAGATCTGAAAATTCTGATCAATTCTTCTTCAACTTTTGTTCTTTCATCAAATGTGCATCTTTCACTTCAATTCTAT CCTCACCCTTTCTCTCTCTCTTTCATTGGATTTGTTACCCTGTGTGTGTACAGTTCTTTTTGTTTTTTTGTTTTAATTAT TCTAAAATTCAGCAATTCTTCCCCCCCTTTTTCTTTCATGGTCTTTAATTCAAACATAAACTGTTCATGAAAATAATTTT ATAGATATATGCAGCATCTATAGCTTGGATGTGATTTGCTTTTCACATATCCATTTTGGTACATGCTTTCTTTTTCCCAA ATAAGTTACCACCAGCTTCAATTGAGTCTCCAAAAGCATGATTTTCCATTTTTCCTCCTCCTTTATTTCAGTTACCCACT CTTATTAGGAAATTAAGGTAGATTTCAAAATCTTCTCACTTGAGGGTCATGTAATTTTCATGGGAAACATTTCCATTCAC CAATTCACTGTATTTGTCATGAAAATCAACACCACTATCCTTTCCTTATCTTCAGCTCTCTTCATTTACTAAGTGCTCCA TTATTTCCATGCTTTCGCCCGGAATTCGCGATATTTTTGTTCGAATTTATTTATTATTGCATGCTTCAATTGGTTCTTAT CCGATGAATCGATTTAATGCGATAAGATAGACTCGAATATACTTGTTTTTTTTTTAATTGTGAATTTTTGGTGTCTATCT CAGGAAATTGGCAGATCTTGGGTATCACAGAAATGCCAAGAAGTGCAAAGAGAAATTTGAGAATGTTTACAAGTACCACA AGAGAACCAAGGAAGGAAGAAGTGGGAAATCAGATGGGAAAACCTATCGTTTCTTTGATCAATTACAAGCCCTTGAAAAC AACCCTTCAATTCAATCCCCAACAGCTCCAAAACCGCCACAACAGCAAACTGCATCACTGCCTGCAATTCTATCCCCAAC TCCTTCAAAACTGCCAAAACAAACACCACCACCAGCAACAACACATGCATTATCATCATTGTCACTTCCAACCACAACAG TGCCATTGCCATTGCCACCAACATTGGTTAACACAATCCCGAGCACCACCTCCATTACTGTTCCATCAATAGCCCCTTCT TACCCACCATCAAACCCTTCATTTTTCCCATCAACAACAAACCCTCCTCACACCATCACTCCACCTTCCTTCCCCAACAT ACCGACGGATCTCTTGTCCGATTACAGCACTTCGTCGACATCCTCGGACGAAACAATGATGGAAGCCGGAGGAACACGGA AGCGGAAGAGGAAATGGAAGGACTTCTTTGAGAGGCTAATGAAGGAAGTGATGGAGAAGCAGGAGCAGCTGCAGAAGAGG TTCCTGGAGGCCATTGAGAAACGCGAGCAAGAGCGAACGGCTAGAGAAGAAGCGTGGAAGATGCAGGAGATGCAAAAGAT CAACAGGGAGAGAGAAATTCTCGCCCAAGAGAGATCAATTGCCGCAGCAAAAGATGCAGCCGTCATGACATTTCTGCAGA AGATTTCTGAACAACAAAATCTCACTCCTACATCCAACAACAACAACAACAATGCACAACAACCACAAGACCCCGCTCCA GCACCATCACCAGCACTAGTACCGGTACCTGTACCAGTATCGGTACCGGCACCAGTGCAAACACCAATCCTGGTGGCGCA ACAAATTACAGCTGCTCCGGTTCCGCAAGCGCCACAACCATTGGCCCCACAAGAGGTCCCACCACAACATCAGCATCATC AGGTGCAGCAACAAGTGACCAATTTGGAAATGATAAAAGGTGATAATGGAGAGAGTGTGGGTGTGATGCCAGCTAGCTCT TCAAGGTGGCCAAAAGCTGAGGTTGAGGCACTGATAAAGCTAAGAACGAGTTTGGATACAAAGTACCAAGACAGTGGTCC TAAAGGACCACTATGGGAGGAGATATCAGCGTTGATGAGGAAAATGGGGTACAACCGGAATGCCAAAAGATGCAAGGAGA AATGGGAGAATATCAACAAGTACTTTAAGAAAGTGAAGGAGAGCAACAAGAAGAGGCCAGAAGATGCAAAGACTTGTCCT TATTTTCACCAATTGGATGCTCTATACAGGGAGAAGAGCAAGATGATGGAGAGCAGCTTGATGAAGCCTGAGAGTGCTGC GGCGGCCACAGCAATGATGGCACCATTGATGGTGCGGCCGGAGCAGCAGTGGCCGCCCCAACCGGTACCAGATGTCACCA TGGTAGATGCTGGGAGTGATCGTCGGCACAGTGAGGAGGAGGACTATGATGATGATAATGATTATGATGACAAGGATATT GGCGATGAAGATGAAGATGATGAAGGAACTGGTAAGTACGAGATTGTGGCGAGTAAGCCGGCACCGAGGTGAGAAGAATA AATTTTGAGTACTATACACCAGAAACCGGCGGTGACGGTGGTGGAGGGTATTGCAGATTTTGATTATACACATATAGAAT GAAATTGGGTATAGGGGTTGAGGAATCTGAAATGGAAGTAAGCATATAGTCAGCAAGATTATATGTTTCTTTAATTTTCT TTTCAATTTTAGAAAGGAATAATTAATTATTTTTTGAGCTAAATAAATAAGTTGATGAGAGGAAGAAGGAAATTCAAGAT AGGGAGAGGTTCAGACTTCAGAGGTTCCATAAAAATGAATAATGGAAGAAACCTTGCTTAATGTTGCTGTACTTTTTTTT TTAATGTTCAAGGTGGTGTAAATGGGAGAAACAATTAATTGGGGGGGGGGGGTTGTTTTTTTCTTTTCTTCTTTAATTTG TTATTTTTCTAAATTATCCTTTTTTTATTTTCTTACTCTTCAAATGTCAGTATCATTTTTGTTTACCTCTTTCAGTGTTT CATTGTTCATTTTGATGAGAATTAATTGATTTTCTTTTCGCATTTGCACTATATACCAAATTGTCCGAACACACAAGGAG AGGAAGGAGAAAGAGAGTGGAATACTTTTTTTCTTGTGTAAAAATATGAGGTCAGAAAAATGAAAAAGTTAAATTGTGGT GCAGAAAAAATGAAAGAGAAGAATGACTGTGTGGAGCAAAATAGGTTAATACTGAAAAATGGGAGAAAGTAGAAAAGGGG TTTAAATCATAGGGACAGTGACCAGACCATTAGTGTTGGAATAGGACCCTTTCCGTAGCAGAAAATGGCAGCATCACACA TGGAGTCATAAACCTTCAAGGAGGGTCCACTAAGAGGAATCTTGTGAGGAGTGATTAACCTGACTTTGAAGATGGAAGCT GCCGTAACATTTGCTGTGCATCCAAGGATAAGTGTCAGTACTAGAAAATGATGAAGGTTTTTGACGTGGCAAAATGCATT CATAAAATAAAGCTTGGAGGCACATCCTCCACCCAAACATGCTTGGAAAAAGAAGAGGCATTCCTAACCATGAAACCGGC CGCAAAATTACCATCGCGACGCACAAAAGAAAGATTAACATGATCAAACAAATGAACTAATACATAACAGTCGCTAAGTA TTGAAAATAAAT
CDS sequence (LotjaGi2g1v0132700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGGGGACTCAGCAGTGTTGGGAACAGCAGGAGGAGGAGGAGGAAGCTCTGGAGATGCAGCAGTGGCAGCAGCTGC TGCTGCAGCAAGAGCTCATGACGGCGGTGATACGGCGGCGGGTGGTGGTGGAGGCGGATCAAATTCAGGGGATGATGAAA GGGGTGACCGGAGCTTTGGCGGTAACCGGTGGCCTAGACAAGAGACTCTGGCTTTGTTGAAGATACGGTCAGATATGGAC GTTGCTTTTAGAGATGCCAGTGTTAAGGGTCCCTTGTGGGATGAAGTTTCAAGGAAATTGGCAGATCTTGGGTATCACAG AAATGCCAAGAAGTGCAAAGAGAAATTTGAGAATGTTTACAAGTACCACAAGAGAACCAAGGAAGGAAGAAGTGGGAAAT CAGATGGGAAAACCTATCGTTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTTCAATTCAATCCCCAACAGCTCCA AAACCGCCACAACAGCAAACTGCATCACTGCCTGCAATTCTATCCCCAACTCCTTCAAAACTGCCAAAACAAACACCACC ACCAGCAACAACACATGCATTATCATCATTGTCACTTCCAACCACAACAGTGCCATTGCCATTGCCACCAACATTGGTTA ACACAATCCCGAGCACCACCTCCATTACTGTTCCATCAATAGCCCCTTCTTACCCACCATCAAACCCTTCATTTTTCCCA TCAACAACAAACCCTCCTCACACCATCACTCCACCTTCCTTCCCCAACATACCGACGGATCTCTTGTCCGATTACAGCAC TTCGTCGACATCCTCGGACGAAACAATGATGGAAGCCGGAGGAACACGGAAGCGGAAGAGGAAATGGAAGGACTTCTTTG AGAGGCTAATGAAGGAAGTGATGGAGAAGCAGGAGCAGCTGCAGAAGAGGTTCCTGGAGGCCATTGAGAAACGCGAGCAA GAGCGAACGGCTAGAGAAGAAGCGTGGAAGATGCAGGAGATGCAAAAGATCAACAGGGAGAGAGAAATTCTCGCCCAAGA GAGATCAATTGCCGCAGCAAAAGATGCAGCCGTCATGACATTTCTGCAGAAGATTTCTGAACAACAAAATCTCACTCCTA CATCCAACAACAACAACAACAATGCACAACAACCACAAGACCCCGCTCCAGCACCATCACCAGCACTAGTACCGGTACCT GTACCAGTATCGGTACCGGCACCAGTGCAAACACCAATCCTGGTGGCGCAACAAATTACAGCTGCTCCGGTTCCGCAAGC GCCACAACCATTGGCCCCACAAGAGGTCCCACCACAACATCAGCATCATCAGGTGCAGCAACAAGTGACCAATTTGGAAA TGATAAAAGGTGATAATGGAGAGAGTGTGGGTGTGATGCCAGCTAGCTCTTCAAGGTGGCCAAAAGCTGAGGTTGAGGCA CTGATAAAGCTAAGAACGAGTTTGGATACAAAGTACCAAGACAGTGGTCCTAAAGGACCACTATGGGAGGAGATATCAGC GTTGATGAGGAAAATGGGGTACAACCGGAATGCCAAAAGATGCAAGGAGAAATGGGAGAATATCAACAAGTACTTTAAGA AAGTGAAGGAGAGCAACAAGAAGAGGCCAGAAGATGCAAAGACTTGTCCTTATTTTCACCAATTGGATGCTCTATACAGG GAGAAGAGCAAGATGATGGAGAGCAGCTTGATGAAGCCTGAGAGTGCTGCGGCGGCCACAGCAATGATGGCACCATTGAT GGTGCGGCCGGAGCAGCAGTGGCCGCCCCAACCGGTACCAGATGTCACCATGGTAGATGCTGGGAGTGATCGTCGGCACA GTGAGGAGGAGGACTATGATGATGATAATGATTATGATGACAAGGATATTGGCGATGAAGATGAAGATGATGAAGGAACT GGTAAGTACGAGATTGTGGCGAGTAAGCCGGCACCGAGGTGA
Protein sequence (LotjaGi2g1v0132700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGDSAVLGTAGGGGGSSGDAAVAAAAAAARAHDGGDTAAGGGGGGSNSGDDERGDRSFGGNRWPRQETLALLKIRSDMD VAFRDASVKGPLWDEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLQALENNPSIQSPTAP KPPQQQTASLPAILSPTPSKLPKQTPPPATTHALSSLSLPTTTVPLPLPPTLVNTIPSTTSITVPSIAPSYPPSNPSFFP STTNPPHTITPPSFPNIPTDLLSDYSTSSTSSDETMMEAGGTRKRKRKWKDFFERLMKEVMEKQEQLQKRFLEAIEKREQ ERTAREEAWKMQEMQKINREREILAQERSIAAAKDAAVMTFLQKISEQQNLTPTSNNNNNNAQQPQDPAPAPSPALVPVP VPVSVPAPVQTPILVAQQITAAPVPQAPQPLAPQEVPPQHQHHQVQQQVTNLEMIKGDNGESVGVMPASSSRWPKAEVEA LIKLRTSLDTKYQDSGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALYR EKSKMMESSLMKPESAAAATAMMAPLMVRPEQQWPPQPVPDVTMVDAGSDRRHSEEEDYDDDNDYDDKDIGDEDEDDEGT GKYEIVASKPAPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 647 | 647 | 1.4E-248 | – | |
| PANTHER | 1 | 647 | 647 | 1.4E-248 | – | |
| MobiDBLite | 1 | 63 | 63 | - | – | |
| SMART | 60 | 122 | 63 | 0.0025 | ||
| ProSiteProfiles | 62 | 120 | 59 | 6.702 | ||
| Pfam | 62 | 148 | 87 | 5.1E-18 | – | |
| CDD | 62 | 127 | 66 | 5.17851E-24 | – | |
| Gene3D | 64 | 126 | 63 | 3.4E-24 | – | |
| MobiDBLite | 151 | 195 | 45 | - | – | |
| MobiDBLite | 151 | 174 | 24 | - | – | |
| MobiDBLite | 235 | 253 | 19 | - | – | |
| MobiDBLite | 235 | 257 | 23 | - | – | |
| Coils | 290 | 321 | 32 | - | – | |
| MobiDBLite | 370 | 386 | 17 | - | – | |
| MobiDBLite | 370 | 395 | 26 | - | – | |
| MobiDBLite | 426 | 446 | 21 | - | – | |
| SMART | 469 | 531 | 63 | 7.5E-5 | ||
| SUPERFAMILY | 470 | 531 | 62 | 7.45E-5 | ||
| CDD | 471 | 536 | 66 | 3.54675E-29 | – | |
| Pfam | 471 | 558 | 88 | 2.8E-22 | – | |
| ProSiteProfiles | 471 | 529 | 59 | 7.399 | ||
| Gene3D | 473 | 535 | 63 | 1.1E-27 | – | |
| MobiDBLite | 591 | 653 | 63 | - | – | |
| MobiDBLite | 619 | 640 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0132700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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