Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0139200 |
| Transcript ID | LotjaGi2g1v0139200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein; TAIR: AT5G52430.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|A0A1J7H0E3|A0A1J7H0E3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0139200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:50973107..50978520) extracted from Lotus japonicus Gifu genome v1.2.
AACCATAGAAAGAGAGAACAAGACAAGAAACATAGAAAGAGAAACAAAATGATTCATTGATTTTCCTTCTATTCTATTCT ATTCTATTCCTTCTTCTACATACAACCATAACTCCTCCAACTCCAACTCACATAATAATAATTTAATTCATAACTATTCA TTCATGTGTCCCTTCCATGTTGAGTAGTGTGTGACTGATCAATCACACACACCACATGACTCTCTCTCTCTCTCACTCTT CCTAATTACTCATACTAAATAAATACTTCTAATTTCCATTCTCTTCTCTTCCCCCTCTCTCTCTCTATCTCATCATTCCT TTTTTTTCTCTCTCTCTCATCCGTTTCTTTCCAATCCATGATTGCATCTCGCCGCCAAATCCTTCCTCCGCCGTCAACTT CCGATCTCCGGTGACCGGAAAACACTCCATCCCGTGTTTCTTCCATCTGATTTATTCAATCTTATGATGGGAAGCCTCAA CAACAGCGTTGATACGGTGAACGCTGCCGCCACCGCCATCGCCTCCGCCGAATCCAGAGTCCAACCCGCCGCCGTACCGG TTCGTTCGTCTCTCTCTCTCTCTATATCTCTTAAAATATTCCTGTTACTTACCTCGATTCTTTTCGAGTTTCGAGGCTCT GTTTGGTTTCCGAGAAACAACGTGTGGAAGAGAGAAAATAATGGGATCTCGTGTTCTGTGTTTTATGTTTTCGATTTCCT TTTATTTTTTCTCTTCTCTCTCTGATATTTTATTGTAGTCTTTTATAGTAATTGGACTTGTGTTGAAAGGTTTGAAATCA TTTCTCTTGTTTTCCTTTTTTTTTCACTTTTTAGTTGTGGCTTTCAAAAAGTATGAAAAAGAAGGGAAATTTGGACTTTG GAGTTTGGATCTTGGGTCTCCCTGCTTCAATTTTTTTTTCATTGTAGCTAGTTAGCTACTGTTGTTATTTTTGCCTTTTA ATGTTTTATGCATTCCATGTACTTTGATTGATTCACCTATCTATCAGAGGCTTAATTTCTATTATTAGCACCTAGATTTT TTGCTAATGTTAACTCTTGCCATTTGTAATCTGTAGTTTCTTATTTTGGGTTGTTGCAATTAGAGTCCTAGAGTCCTCTT GATTTTACATGTTAAGCAGAAACAATCCTTTGGCTGAAAATTTTGAGTTTAGTACTTACTATCATGATTCCAGGAACTTT CTTTTCTTGCTGTTTGATGACAACTTTTGTAAATAATTGACTGAGTTGAGAGCATTTTGGCTTGGCATAGTTCTATATTG GTATGCTTTCAATAAGCTATGTTAATTCTTTATTATATCTTGGTGTTTTTGGGGTGTGTGTCTCAAATTAACATATGGAA AACATATAATTGAATAAGAGTGGGAAAATTGCTTCTACCATGTTTCGATCAGCTTCTCTTTTCTGAATTCTGAAATCCAG TCACATAATATTCTTCCCATAATTGATTCTGGATTTAGAATCAATTGTTAAAGTATTTCCAAACATGCACGTCAGTGTCT GAAATCAGCACCGGATTAACTTCCTAGTCCTTCTGACTATGGATTTCAGTTCACATCTTCGTCTTACAGAATAGGATGAA TTTTGAAATTGATTGCGCCATCAATGCCATTGGCTGATAAGGGTATTTCTTCCTCCCTCTTCTGCTCATCGGTGAAGCAA GGCTTTTGTTAGTGCTATTCTTTTTTTTAATCCTTTGACTGATGGGCTATTTATGTTACTCTACCATGATCTTTTAAATA GTAATGCTCACACATTTCAATTTTTGCTGCCTGTTGATCCTTTGATTACTGACATAAATACTAAGTTGCTGACATGTTTT TCATATCTGTATGTAATTAGATAATATATCAAACATTTTGAGAGACATGGTTATCATCAGAAGATGAAAATACTGATAGT TAGTAATCACTTAGGAACGAACTTAAGTAAGAACTAATTAACTATCTGTAACTAACTATAAGTATTTTCATCTTTTGTTG ATAATAGTAAACTCAAACTCAAGCTTTCTTCTTCTATGCTTTACCATGGGTAGGCTGATGAATCTAACCAGTAACATTCC TTCCCCATTAGTTATAATAGGTAATTTATATAGTTATTGGATAAATTTCAGGCTTAAATCAATCTGTGTGTGTTGATTAG CTATCAGAAAATTTAATGTGCTTACTCTGGAAGGTAAATGTCTAATGGGCATTCCTTATCTCTAATATGTTTTCTCTAGG CCAAACCTCTCTTTTATCCTGAAATATTGGACCCTGTATAACTCAAAATTGAGTATTTGGTAGTGTGTGTAGTAAAATTA CCTCAATGTTAAGAGTCACATAGTAAAGCATTTGATGCTTAATTTATAGGGATTATGTACTATTTCGGCTGAGTAAACCT GACTGGTTTTATTTAATGCATGAATCTTGATACATGGACTTCACTTGCCCCTCAGTGATACAGTAAGTGTTGAAATTGGA ATTTTAATTATGAAAGTGGAACTAAATCTAAAAACATAATTACAGTGAAGGGGAAAGGGAAAGGAAACAGTATATAATTT TTCTTTCTATGCAGAAACATAGAGTATTAATTCTGTTTCAACTTTTGATTTAGAATTTTTTTCCATAAATGCAGAAAAAA CGCTGGGGAAGCTTCCTGAGCCTGTCTTCGTGCTTCGGATCTCAGAAAAGCAGCAAGCGAATCGGCCATGCTGTCCTTGT TCCTGAACCTCTTGCACCAGCCGGTCCAGCTGCTGCTACTGCCGCACAAAATCCTTCAACTTCCATTCTAATGCCTTTCA TTGCTCCTCCTTCTTCTCCTGCATCTTTTCTCCAGTCTGATCCTCCCTCCGCTACTCACTCACCGGCTGGATTACTGTCA CTCACTTCTCTCGCTGCCAATGCATACTCTTCTGGTGGTTCTTCTTCCATTTTCACCATAGGTCCATATGCCTATGAGAC TCAGTTAGTTTCACCACCTGTATTTTCCAACTTCACAACTGAACCATCAACTGCTTCTTTTACTCCCCCACCTGAATCTG TGCAGCTGACAACACCTTCATCACCTGAGGTTCCCTTTGCTCAATTGCTGGCATCTTCGCTGGACCGGGCTCGTAAAAGT AACGGATCACAGAAGTTTGCATTGTACAATTATGAATTTCAACCTTATCAACAATATCCTGGAAGCCCTGGTGGCCAACT CATATCACCTGGATCTGCCTTTTCGACTTCTGGTACTTCTACCCCTTTCCCTGATAGACGCCCAACTCGAAAATGGAGTT CAAGGATGGGATCTGGATCTTTGACACCAGAAAGTGCAGGGCAAGGTTCAAGACTAGGTTCAGGATCTTTGACACCTAAT GGTGTTGGACTTGCTTCAAGGTTAGGTTCTGGGTGTGTGACACCTGATGGTTTGGGGCAGGACTCAAGATTGGGTTCGGG ATCTTTGACGCCTGATGGTGCTGGACCATCCTCTCAAGACAGGATCAGTGTGCAAAACCAGTTTTCTGGGGAAGCATCAC TTGCAAACACAGAGAATGGAATTCAAAGCAATTCAACATTAGTCGACCACAGAGTTTCATTTGAATTAACTGGTGAAGAT GTTGCGCGATGTCTTGCAAATAAAACAGGTATACTGCTTCGAAACATATCAAGATCTTCCCAGGGTATACTGGCCAAAGA CCCTATTGAAAGAGATAACATACAAAGAGACTCTAGTAGTTGTTGTGATGTATGTTCAGGGGAAACTAATGATAAGCAGT GCTGTCAGAAGCATCACTCTGTTAATAGTTCTTCCAAAGAATTCAATTTTGACAGCAGAAAAGGCGATGTTTCCGGCACT GCTGCAAATAGCTCTGAGTGGTGGGCTAACAAGAAGGTTGTTGGGAAGGAAAGTAAATCAGCCAACAGTTGGGCTTTTTT CCCAATGCTACAACCAGAAATCAGCTGAGGATATAGTTCATTGCAACATGACTTATAACCTGTATGGTTTTAGGCAAAAA GATTTTCCGTTTCTTTGCAGAATCTTTAGGAGCATACTGAATGAATATGTGAAATTATTTTGAATGCAGTAAATGGATGA TTGAGTGACACTCAGTTGATAGTCCCTTAGGATCGTACAAGGTAGAATGCAAGAGGAGCATAGTTGGTATAGGTAGGGAC CTATAGAGTGGGTTTTAAATTCTGTGGAACATTACTTCTGGCATTTCATGTTTCAATTATACAGATAGCAAAAGTACAGG TATTTGGTGTTGTGGATTATTGTATCATTTCCTTTGCAATAATGAAAAATAGTATCTTTTTCAATTGGGCATTTGGTTTA TTATAGAGGACCTGCATGTATGATGGGGTCTCCAGCTGCAATTGTTGCATTGTGGGGACTTTCAAATATACAGGTGGTGC TTGTATCATTTGAAGGTGGGTTCCCCATACAGCTCCTCTCTTACATAATCTTTGATGTTCAAACTCTGGTAGTCCCTTCT AACAGATGACTCTTATGGGATTCGAACTTGTGCCCCCACTCATATAGGGGTCCAGCTTGCTTACGAATAGACCAAGACCT TGTTGTCCGCGTCTACATTTTTACCTGTAATTGTGCCCTTTAATTAATGCAGCAATGGGGCATGGGGGAGCTACAGTTCA GCTAGCACAATTGGGCACCAATCTACCACTAACTGATGCATGGTCCCATTGTATATGAATGTGTTGCTGAAAGGCTGCAA CGAACGAAGTGTTCTGGCTCATCATTTTCTGACTGGTTCAATATTGATCTCATTTCAACCGAAAAGAAAATGAGAAATGC AAAAAGGAAGTGGTTTTATGAGATGGCAAGTGTGTGTGTTTGTCATATGGGGACCCTTATAGTGCTATGCACCAGCCACT ATGTTGGTTTTGTCTGAGTTGTTTCATCTTGTCTTGTTTCTTTAAGTTCACAAATGAGTTCCCTATTGGACAAAATGTTT CGCTTTCATGATCAAAAGCTTTTATAGTAGGTGGGTGCCTGTTTCATTCAACCACCTCCAGGATTGAACTTTTCCCTTGA CCTTGTCTAAAAAGGCCAAGTCCTGTGAATAGCTTTGTGTATTCGCAGTTAAAATCTGGCGAGTACAGATGTAATTTTCT CACCCGAGAAATAGGGACTGCCATATTTTCTTGACCACCTGTAGGTTAATTCACCATTGCACACCTTTGCCAATGCATGC AATTAAGCAAGGGTTGTAAAGGCGGACTACATGATTTATAGTAAAGGAATGTCGTTCTTGAAGACCACGAACTAGCCAAG ATGTAATAAAAAAAAACATGATGGTGCGAAGCCAACCATGTACTCGTGAGCTTCTACTCAAGGGATTCCTGAAGATGTAT TAACACAAACTTCAACCCTATAACACAAGTTCAGCCGTTCATTTACGTAACTTG
CDS sequence (LotjaGi2g1v0139200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGAAGCCTCAACAACAGCGTTGATACGGTGAACGCTGCCGCCACCGCCATCGCCTCCGCCGAATCCAGAGTCCA ACCCGCCGCCGTACCGAAAAAACGCTGGGGAAGCTTCCTGAGCCTGTCTTCGTGCTTCGGATCTCAGAAAAGCAGCAAGC GAATCGGCCATGCTGTCCTTGTTCCTGAACCTCTTGCACCAGCCGGTCCAGCTGCTGCTACTGCCGCACAAAATCCTTCA ACTTCCATTCTAATGCCTTTCATTGCTCCTCCTTCTTCTCCTGCATCTTTTCTCCAGTCTGATCCTCCCTCCGCTACTCA CTCACCGGCTGGATTACTGTCACTCACTTCTCTCGCTGCCAATGCATACTCTTCTGGTGGTTCTTCTTCCATTTTCACCA TAGGTCCATATGCCTATGAGACTCAGTTAGTTTCACCACCTGTATTTTCCAACTTCACAACTGAACCATCAACTGCTTCT TTTACTCCCCCACCTGAATCTGTGCAGCTGACAACACCTTCATCACCTGAGGTTCCCTTTGCTCAATTGCTGGCATCTTC GCTGGACCGGGCTCGTAAAAGTAACGGATCACAGAAGTTTGCATTGTACAATTATGAATTTCAACCTTATCAACAATATC CTGGAAGCCCTGGTGGCCAACTCATATCACCTGGATCTGCCTTTTCGACTTCTGGTACTTCTACCCCTTTCCCTGATAGA CGCCCAACTCGAAAATGGAGTTCAAGGATGGGATCTGGATCTTTGACACCAGAAAGTGCAGGGCAAGGTTCAAGACTAGG TTCAGGATCTTTGACACCTAATGGTGTTGGACTTGCTTCAAGGTTAGGTTCTGGGTGTGTGACACCTGATGGTTTGGGGC AGGACTCAAGATTGGGTTCGGGATCTTTGACGCCTGATGGTGCTGGACCATCCTCTCAAGACAGGATCAGTGTGCAAAAC CAGTTTTCTGGGGAAGCATCACTTGCAAACACAGAGAATGGAATTCAAAGCAATTCAACATTAGTCGACCACAGAGTTTC ATTTGAATTAACTGGTGAAGATGTTGCGCGATGTCTTGCAAATAAAACAGGTATACTGCTTCGAAACATATCAAGATCTT CCCAGGGTATACTGGCCAAAGACCCTATTGAAAGAGATAACATACAAAGAGACTCTAGTAGTTGTTGTGATGTATGTTCA GGGGAAACTAATGATAAGCAGTGCTGTCAGAAGCATCACTCTGTTAATAGTTCTTCCAAAGAATTCAATTTTGACAGCAG AAAAGGCGATGTTTCCGGCACTGCTGCAAATAGCTCTGAGTGGTGGGCTAACAAGAAGGTTGTTGGGAAGGAAAGTAAAT CAGCCAACAGTTGGGCTTTTTTCCCAATGCTACAACCAGAAATCAGCTGA
Protein sequence (LotjaGi2g1v0139200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGSLNNSVDTVNAAATAIASAESRVQPAAVPKKRWGSFLSLSSCFGSQKSSKRIGHAVLVPEPLAPAGPAAATAAQNPS TSILMPFIAPPSSPASFLQSDPPSATHSPAGLLSLTSLAANAYSSGGSSSIFTIGPYAYETQLVSPPVFSNFTTEPSTAS FTPPPESVQLTTPSSPEVPFAQLLASSLDRARKSNGSQKFALYNYEFQPYQQYPGSPGGQLISPGSAFSTSGTSTPFPDR RPTRKWSSRMGSGSLTPESAGQGSRLGSGSLTPNGVGLASRLGSGCVTPDGLGQDSRLGSGSLTPDGAGPSSQDRISVQN QFSGEASLANTENGIQSNSTLVDHRVSFELTGEDVARCLANKTGILLRNISRSSQGILAKDPIERDNIQRDSSSCCDVCS GETNDKQCCQKHHSVNSSSKEFNFDSRKGDVSGTAANSSEWWANKKVVGKESKSANSWAFFPMLQPEIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 261 | 260 | 1.3E-195 | – | |
| PANTHER | 2 | 261 | 260 | 1.3E-195 | ||
| MobiDBLite | 154 | 175 | 22 | - | – | |
| MobiDBLite | 214 | 274 | 61 | - | – | |
| PANTHER | 262 | 469 | 208 | 1.3E-195 | – | |
| PANTHER | 262 | 469 | 208 | 1.3E-195 | ||
| MobiDBLite | 287 | 315 | 29 | - | – | |
| MobiDBLite | 295 | 315 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0139200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…