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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR040420
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.886s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0139200.1
n.a. Hydroxyproline-rich glycoprotein family protein; TAIR: AT5G52430.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|A0A1J7H0E3|A0A1J7H0E3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0139200 LjG1.1_chr2 50973107 50978520 +
2 domain predictions
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LotjaGi4g1v0428000.1
n.a. Hydroxyproline-rich glycoprotein family protein; TAIR: AT5G52430.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|I1K6H3|I1K6H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0428000 LjG1.1_chr4 80234661 80238282 -
2 domain predictions
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LotjaGi5g1v0000400.1
n.a. Hydroxyproline-rich glycoprotein family protein, putative; TAIR: AT1G76660.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|A0A072VQ62|A0A072VQ62_MEDTR Hydroxyproline-rich glycoprotein family protein, putative; Found in the gene: LotjaGi5g1v0000400 LjG1.1_chr5 106742 113196 +
2 domain predictions
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LotjaGi5g1v0000400.2
n.a. Hydroxyproline-rich glycoprotein family protein, putative; TAIR: AT1G76660.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|I1MBX8|I1MBX8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0000400 LjG1.1_chr5 106742 113243 +
2 domain predictions
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LotjaGi5g1v0000400.3
n.a. Hydroxyproline-rich glycoprotein family protein, putative; TAIR: AT1G76660.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|A0A072VQ62|A0A072VQ62_MEDTR Hydroxyproline-rich glycoprotein family protein, putative; Found in the gene: LotjaGi5g1v0000400 LjG1.1_chr5 110271 112556 +
2 domain predictions
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LotjaGi5g1v0000400.4
n.a. Hydroxyproline-rich glycoprotein family protein, putative; TAIR: AT1G76660.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|A0A072VQ62|A0A072VQ62_MEDTR Hydroxyproline-rich glycoprotein family protein, putative; Found in the gene: LotjaGi5g1v0000400 LjG1.1_chr5 110327 112556 +
2 domain predictions
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