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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0139400 |
| Transcript ID | LotjaGi2g1v0139400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Citrate transporter family protein; TAIR: AT1G02260.1 Divalent ion symporter; Swiss-Prot: sp|Q54GU0|ARSB_DICDI Putative transporter arsB; TrEMBL-Plants: tr|A0A1J7H574|A0A1J7H574_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0139400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:50992749..50997823) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTGAAGTGGAACCCAAATCTTTTTATTATTTGCACCGCCATACATGGCTTGTATTCTCCTTAGTTTATAGACGACA GGGGGGCACGTTTCTCCATGTGGCTATGAGGTGTCTTGAGAAGCCTCTGAACATGCTGCAATTCTCTTCTACCATTTTCA TTACATAATCTCATCTCAACCCCAAAAAATAAACCTTTCATAAATTTGTTGCTTTTTCAGCAAATGACAAAATTCCAATT CTGAGAAGAGCTTCCAAGTTAGAGTTCCGCCCAAGAAATAAAGATCTTTCCTTTCAATGTGTGTGGTCCACATGTTCGTG CTCTTTTCTTGGAGAAGAGGTTATATAAAATGATATTTTTGCTGATAATTTGCACAGCATGTGTTCACCATAAAAGCAGA GACAATAAGGATAAGGGGTTTCACTTTTATCATCCAAATTGAATGTGAATTGTTTCTATAATTTTAATTTTGATTTAGCT GAATAAGTTTGTTGTGCTGTACATGGTTACTGTTTTTTTATTTTGGGATTTGTGGGTTGTTTCATTCTCTGAGAAGAGTA CCAGGACTTGCATTTTCTGAAAGATGTGGTTGAATCGTTGACTTTTATTTTCTCTGGAATTTTTTAGTTCTATGCTTTCT GAAAGTTCAGAGAAATTGTTATTATATCTCATTTTGCTAGATTCTACTGCTTTTTTGTTTCTTGCTCAACTTTGACTTTT TGTCATTTTTTAAGCTCTGTGTGTACCATGATTCCATGAACATATCTGCTCCACCTGGTTGATCACACAGTAGTGATTCA TATCAGGGTAACAGGGTTCTAAATTGCGGTTCGCAACTGCAGTTTCCCGGCCACAACATTACGGGTTTGGAAGTCCTGCA ACGGCTTCTCGACTCGCAATTGTAGGCGTTTCAATCCGCAATTCTGCAACGCAGCAGTGCAGCCAGCCACAAACGCAATT TAAAACCCTTAGTAGTATTTTGAATCAGAAATGGAGTCTTGCAAAGTTGGATTTTCATCCATTTAACTAACTAATTGGAG TTAGGGTAGTGAACTCTGTCTTTTTCCCCTTAGCTGCAAAATAAGTAGTTTAAGCTTGAGCGAAGTAATAGAGGTTACTG TATGAATAATCCTTTCATGTTTTGTGCAGTTTTAGAAACTAGAAGCTCCGTAAGTGTTGTACAATAATTGATTAACTTCA TCTATGATTTGAATTGATAGAGTTTCCGGACAACTAATCAGATTCTTTTAAGAAATTGTTATTATAGCTCGCTTTGCTAA ATTCTACTGCTTGTTTGTTTCTTGCTCAACTTTGACTTTGTGTTATTGTTTAAGCTTTGTAAGTACCATGAACATATCTG CTCCGTCTGGTTGATCACTAATCTTAACTGTCAGTAGCGATTCACATTATTGCAGTCCCTCATAGTAGTATATTGAATCA AACCGGAGTTTGAAAGGTAGGATTCTCATCCATTCTTACTAACCAATTGACTTTTCATGTTCAGGAAATTTCAATCTACC AGACTAAATTTTGTTGTGCGAAAGGCCTAGTGGTACCACCAAACGCGTAGATAAAATGGCACGGGATTGTTCTAACAAGC AAATGTCTCAGGTTAGAGTATCTGTAAATGCAGCTACATTAAGTGCTAGTTAGGGAGAGCTTTGCCGCCCATAGAGGTCC TACTCGGCTCGAACAGGATTGCCTCAGTGGAGGATACTTGTGGTTTAAACAAACCACAGAAAAAAAGGCCTAGAGGTGGA GATTTTAATTCAATCATTGACTGGAACTGATTGTTTCTTGTTTAGCCACAATAATGGCACTGGCTCCTATTCCAAAAGTT ATCCTGGGTTCAACTGCCTTTGCAATCTTCTGGGTATTAGCTGTTTTCCCAGCAGTGCCTTTTCTACCCATTGGGAGAAC TGCTGGTTCACTTCTAGGTGCAATGCTGATGGTCATATTCCGAGTCCTTACTCCGGATCAAGCTTATGCTGCAATTGATC TCCCAATTCTCGGTCTTCTTTTCGGGACGATGGTTGTCAGTATTTATCTTGAAAGAGCAGACATGTTTAAGTACCTAGGG AAATTACTCTCTTGGAAAAGCCAAGGAGCAAAGGACTTGCTTTGTCGAATCTGTCTGATTTCTGCTGTATCAAGTGCTCT ATTCACCAATGACACGTCATGTGTTGTTTTAACTGAGTTCATATTGAAAATCGCGAGGCAACACAACCTCCCACCCCATC CTTTCCTACTTGCACTTGCCTCCAGTGCTAATATTGGGTCCTCAGCAACTCCAATTGGCAACCCCCAGAATCTGGTTATA GCTGTTCAGAGTAAAATTTCATTTGGGAAGTTTTTGACTGGTATTCTTCCGGCTATGCTCGTAGGAGTCGTAGTGAATGC TTTAATTCTTATAGCTATGTATTGGAGAATATTATCTATTCATAAGGATGTAGAGGATCCAGTTGCAGAAGTTGAAGCAA CTGAGGAGGTTAATTCGCATCAGTTTTCTCCAGCCACAATGTCTCATGTTACATCCTCTAATTCTCAAGAATTGAATGGT TATCTAGAAACTTCTAGTCTTCAAAACTCTCCTCTAGTTCATAATTTAAGAAACCGATCAACTCCAACTGACAATGAAAT TCACAAGGTTCTTGGTGGCACGCTGGACTCCACAAGAAACTCAAATGCATCAATGGAGGGGACAAATGATGTGCCCTCTC AGATAAAAGAGGAAACAAATCCTTCAAAAACTGTTGCAGAAGTAGATAACCCAACAGAACATGAAATGCACTCTTCAGAA GGAAAGGGCAATATAGACGTAATGTGGAAAGATATACTGTGGAAATCTTGTGTTTACATGATCACATTAGGAATGTTGAT TGCAATGCTTTTAGGTTTAAATATGTCATGGAGTGCAATTACAGCTGCACTAGCTTTGGTTGTTCTTGATTTCAAAGATG CTAGACCATGCTTGGAGAAGGTAAAACCTATAAAGATAACCTCTTTTACAATCTCTTTTTTTTTTACCTCTCTCCCCCTT CAGAAACACTAGCTGTTTCTCTTTTTCTAGTGCCGATTGATATTTGAACTGTCTCTTAGAATGGTATTTTTTTCTTGTAA CAGGTTTCGTATTCGCTATTGATATTCTTTTGTGGAATGTTTATCACAGTAGAAGGCTTCAATAAAACTGGAATTCCAAG TTCCTTATGGGACTTGATGGAGCCTTATTCTGAAGTAGACCGCGCTAGTGGAATAGCCGTACTTGCTGTAGTTATACTTG TCTTATCAAATTTGGCTTCGAATGTTCCAACTGGTAAGTGGATGATTCTCCAGTCACAATAATTTCATCATGCGTTCTTT TTACTCTTTCATCTTTCTTTTTGTCCTTTTTTTTGCTCATGTGTCATGATTTTTGAAAACATTCCGAATGCATATTTCTT ATAGTAGGAACCTGGGAAAATCTGCATTCTCCAAGTCCACTGAGTCAATTCTTGCAAATCCTCTTGATTGCGAACTTCAT AGCAATTCAATAAATTTAGGAACATATATGAGTGAGTTGTTTGCCCCAATCATTGAAGAGCTTGCATGTCTTCATTTAAG GAAAATTGTGTGTTAAGACAAAAAACAGTTTATCGAAGATGCATATGCACAAATAGTACATAACTTGTTAATAAAACGTC TGAATAAGTGCTAGCTACAATTATTTTGATCAAAATGATGGTTTTTTTCATTAAAGAACATTTAAAAATTTAATTTTGAC TTTCCTTTTAGATCTATATATGTGTGTGTGTGTGTGTGTGTGTGTATTTCTCAACCATAAACTGGGGAGGAATAAAGAAA GGGGATAACACATTTTACTATTTTAGGAATATTCTGCTCTTATAATGAGGATTGCAGAGCTTAGCAGGAGTGTTGTAATA ATTTAACGGAACATGAGATCAATCAACTAAATAGCATGTGCAAGTGCCATTTTCAATACAAAACAACTAAAGGTTTAAAG AAAACAGATTATGGAAGATATGTTCGTCAAAGTTTTAGTTATTGCCTTCTTTTATATGGAGGAAAAGAGCATTGTTGTAA AAGGAACCTTGAACTGCAGTTTTCCTGAAAAAGGTTCAGTTTTATTCTTTGAATGTTTACTGATTTGATCTGTGGTTTCA TACAAACAAGAAATATGTTGAGATTTCATTTCCCCAAAAGTTTCCACTTGTATGCACAAAACTAATATACACAGTAGAGT CATGAAATGATTATGTAAGTATGTATTCTAGAATTGATCCTAATGGAGCTTTGTTTTTCATTTCTTTTCCTATAAAGCCT GTTATTAAGTTGATCTTATGTTATATATTTTCTAGTTTTATTGCTTGGAGCAAGAGTTGCAGCATCAGCTGCTACAATTT CGAAAGAAGATGAGAAAAAGGCATGGCTCATCTTGGCTTGGGTTAGCACCATAGCGGGGAACCTGTCACTGCTGGGATCA GCAGCAAACTTGATAGTGTGTGAACAAGCGCGTCGAGCTCCGAACCTTGCTTACACATTAACCTTCTTGAGCCATCTGAA ATTTGGCCTTCCTTCTACTCTTGTGGTCACTGCTATTGGTTTGACACTCATAAGATGATAAGAATTTATAGAACTCCAAA TTCTTACTTAGAAATTCACATAGCACCAAAAAAATCAGTATATCTGGTATATTTTAAGTGTATATGAAAACATATGTAAT GAATCATGAATTTTGTGAGTTTTGATCCTCCATGTGAAACCAAGAACCACTTGCAAATTTGCAAATAAGAAGATTAGATG CTATTGTGCATGTATGATTGCTTGATTCTTTATTCCAATTTGCACAACTTCAATTTTCGATATTGTTTTCTTTCAAAAAA TAAAATCGATATTATTTTGTTTTACTTGCCGGAATCAAAAATTCTTATTACCATCAACCAACAATTGGCCAGTTCAATGG TATCTTACTTTCAAAAAAAAAGGGTAAGATCTTAAGTTTAAATATTGTATATAGAAAAAAAAAATACTTACTAGAAGAAC TAATATGTGAATTTTTTCAAATTGAACAAAACTAC
CDS sequence (LotjaGi2g1v0139400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTGGCTCCTATTCCAAAAGTTATCCTGGGTTCAACTGCCTTTGCAATCTTCTGGGTATTAGCTGTTTTCCCAGC AGTGCCTTTTCTACCCATTGGGAGAACTGCTGGTTCACTTCTAGGTGCAATGCTGATGGTCATATTCCGAGTCCTTACTC CGGATCAAGCTTATGCTGCAATTGATCTCCCAATTCTCGGTCTTCTTTTCGGGACGATGGTTGTCAGTATTTATCTTGAA AGAGCAGACATGTTTAAGTACCTAGGGAAATTACTCTCTTGGAAAAGCCAAGGAGCAAAGGACTTGCTTTGTCGAATCTG TCTGATTTCTGCTGTATCAAGTGCTCTATTCACCAATGACACGTCATGTGTTGTTTTAACTGAGTTCATATTGAAAATCG CGAGGCAACACAACCTCCCACCCCATCCTTTCCTACTTGCACTTGCCTCCAGTGCTAATATTGGGTCCTCAGCAACTCCA ATTGGCAACCCCCAGAATCTGGTTATAGCTGTTCAGAGTAAAATTTCATTTGGGAAGTTTTTGACTGGTATTCTTCCGGC TATGCTCGTAGGAGTCGTAGTGAATGCTTTAATTCTTATAGCTATGTATTGGAGAATATTATCTATTCATAAGGATGTAG AGGATCCAGTTGCAGAAGTTGAAGCAACTGAGGAGGTTAATTCGCATCAGTTTTCTCCAGCCACAATGTCTCATGTTACA TCCTCTAATTCTCAAGAATTGAATGGTTATCTAGAAACTTCTAGTCTTCAAAACTCTCCTCTAGTTCATAATTTAAGAAA CCGATCAACTCCAACTGACAATGAAATTCACAAGGTTCTTGGTGGCACGCTGGACTCCACAAGAAACTCAAATGCATCAA TGGAGGGGACAAATGATGTGCCCTCTCAGATAAAAGAGGAAACAAATCCTTCAAAAACTGTTGCAGAAGTAGATAACCCA ACAGAACATGAAATGCACTCTTCAGAAGGAAAGGGCAATATAGACGTAATGTGGAAAGATATACTGTGGAAATCTTGTGT TTACATGATCACATTAGGAATGTTGATTGCAATGCTTTTAGGTTTAAATATGTCATGGAGTGCAATTACAGCTGCACTAG CTTTGGTTGTTCTTGATTTCAAAGATGCTAGACCATGCTTGGAGAAGGTTTCGTATTCGCTATTGATATTCTTTTGTGGA ATGTTTATCACAGTAGAAGGCTTCAATAAAACTGGAATTCCAAGTTCCTTATGGGACTTGATGGAGCCTTATTCTGAAGT AGACCGCGCTAGTGGAATAGCCGTACTTGCTGTAGTTATACTTGTCTTATCAAATTTGGCTTCGAATGTTCCAACTGTTT TATTGCTTGGAGCAAGAGTTGCAGCATCAGCTGCTACAATTTCGAAAGAAGATGAGAAAAAGGCATGGCTCATCTTGGCT TGGGTTAGCACCATAGCGGGGAACCTGTCACTGCTGGGATCAGCAGCAAACTTGATAGTGTGTGAACAAGCGCGTCGAGC TCCGAACCTTGCTTACACATTAACCTTCTTGAGCCATCTGAAATTTGGCCTTCCTTCTACTCTTGTGGTCACTGCTATTG GTTTGACACTCATAAGATGA
Protein sequence (LotjaGi2g1v0139400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALAPIPKVILGSTAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVIFRVLTPDQAYAAIDLPILGLLFGTMVVSIYLE RADMFKYLGKLLSWKSQGAKDLLCRICLISAVSSALFTNDTSCVVLTEFILKIARQHNLPPHPFLLALASSANIGSSATP IGNPQNLVIAVQSKISFGKFLTGILPAMLVGVVVNALILIAMYWRILSIHKDVEDPVAEVEATEEVNSHQFSPATMSHVT SSNSQELNGYLETSSLQNSPLVHNLRNRSTPTDNEIHKVLGGTLDSTRNSNASMEGTNDVPSQIKEETNPSKTVAEVDNP TEHEMHSSEGKGNIDVMWKDILWKSCVYMITLGMLIAMLLGLNMSWSAITAALALVVLDFKDARPCLEKVSYSLLIFFCG MFITVEGFNKTGIPSSLWDLMEPYSEVDRASGIAVLAVVILVLSNLASNVPTVLLLGARVAASAATISKEDEKKAWLILA WVSTIAGNLSLLGSAANLIVCEQARRAPNLAYTLTFLSHLKFGLPSTLVVTAIGLTLIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 539 | 539 | 2.3E-266 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 539 | 539 | 2.3E-266 | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 26 | 31 | 6 | - | – | |
| Pfam | 27 | 486 | 460 | 1.4E-52 | ||
| CDD | 28 | 538 | 511 | 3.46598E-112 | – | |
| Phobius | 32 | 52 | 21 | - | – | |
| Phobius | 53 | 57 | 5 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 58 | 79 | 22 | - | – | |
| Phobius | 80 | 179 | 100 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 180 | 204 | 25 | - | – | |
| Phobius | 205 | 346 | 142 | - | – | |
| MobiDBLite | 282 | 329 | 48 | - | – | |
| MobiDBLite | 283 | 316 | 34 | - | – | |
| Phobius | 347 | 378 | 32 | - | – | |
| TMHMM | 356 | 378 | 23 | - | – | |
| Phobius | 379 | 389 | 11 | - | – | |
| Phobius | 390 | 409 | 20 | - | – | |
| TMHMM | 390 | 408 | 19 | - | – | |
| Phobius | 410 | 428 | 19 | - | – | |
| Phobius | 429 | 456 | 28 | - | – | |
| TMHMM | 435 | 457 | 23 | - | – | |
| Phobius | 457 | 475 | 19 | - | – | |
| Phobius | 476 | 500 | 25 | - | – | |
| TMHMM | 478 | 500 | 23 | - | – | |
| Phobius | 501 | 519 | 19 | - | – | |
| TMHMM | 515 | 537 | 23 | - | – | |
| Phobius | 520 | 538 | 19 | - | – | |
| Phobius | 539 | 539 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0139400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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