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LotjaGi2g1v0140400.1

Overview

Field Value
Gene ID LotjaGi2g1v0140400
Transcript ID LotjaGi2g1v0140400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Prolyl 4-hydroxylase alpha subunit, putative; TAIR: AT4G25600.3 Oxoglutarate/iron-dependent oxygenase; Swiss-Prot: sp|Q8GXT7|P4H12_ARATH Probable prolyl 4-hydroxylase 12; TrEMBL-Plants: tr|A0A151TED0|A0A151TED0_CAJCA Prolyl 4-hydroxylase subunit alpha-1; Found in the gene: LotjaGi2g1v0140400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:51194019..51197946) extracted from Lotus japonicus Gifu genome v1.2.

ATCCCATTGATCTCAAAATAACAAAATATTTCCCAAAATGACAAAATGTTAAACTCTCATCACTGACACCTAACATTAAT AGAAGAATGATGTGAGTTTAACGTGGCTGGTAGACAATAACAGAAAGCCGATGCAACCAAGCCAGCAGCAAAGAGAAGAG AAGCAAGCACGATTCGCATCACAATGAATTGCAAATTTCAGATCACATTCACTGAGTAACCATTGAATAACATACACATA ATTACAAACACTTTTTCACCACCACTCCTTCTTTAAGAACCAATGCCCTCCCTTTCCCTTTTCCTCACCCTTCTCCTCCT CCTCTCCACTGCCTCCTTCTCCCAAAGGTAAATTTGCCGACCCATTTCTCTCTTTTCACCAATTTCGCTCCCCACAATTT ACATATATAAAAAAATGCATTGCTTTTCATGGTTTAACCTATTTCTGTTACTAATTAAAATACTTACACTGTTTTTGGCA TTGTTAATTTTGCATTAGCAGCAGGAAGAAATTAAGGAACAAACATCATGAATCTGAGTTGCGGTTTTCAGGTCACTCTG TTTATTATTCCAACAGAGTTGATCCCTCACGTGTTGTCCAAATCTCTTGGCAACCAAGGTCAGGTACTTTCTAGAACTTC CCCTCATCATGTTATTATTAAGTTATATAATGCAGATCTTATATTTTTTCACTTTTGATTTGTTTGTTTATACTAGCAAT TTTTTTTTTTTACTCACATTGCTTTTAAATTTTCAATATTTGATGTTGTTTTGTCCTTGTTGCTGTAGGGTCTTTCTCTA CAAAGGTTTTTTGTCAGACAAGGAGTGTGACTACCTTATTTCTTTGGTATGCTACTGCTTATTGATTTTGGGAATACATT GTCAGCTTTTATTTTCACTAATGGTTATAAAATTATCACATTTTTGTAACTCGCTCCACCTATACTTTTGCATGAGCATT GCTAAATGGCTCGAAATTGTTTTTAAATGAATCAGACTAAGCAGTATAATTTTTATTTAATGATACATGAGATTTCCACC AGTGTCATAATTACGAAGCAATCAACCAATAAGAACAAGGGAAAGCATAGAAACGAATTTCGTTTCGTTCCTTAGAGCAT TTTCCCTTTTGCATAGCTGGTCCTAAGCCCGGACAAAAGAGGAAATTGTGTTAGGTTTTGAGCAGTCAATGTAAAACTCG CCGATATCTTTAATAAGGATTTGTGATATAGCCCACCTCACCTAGTGGGATAAGGCTTTGGTTACAGTGTACTTGTTTTC ATCACTCTATAACTTGTTTTGAAAAGATTTGTACAATGTTTGCTCCATTTTTACAGAAATATTTCAGAAAAAGGTAAAAA TAAGGTGATGTTTCTGTAGTTATTTGTGAAAACAGAATTTTTTTCTCAATTAGAAAAGGTTCTTATTGGTTTTCACTTTT CATGTTGGGTAGTACTTGGGCTACTAGTCTTTGAATTTAACTCTCTCTCTTGTTCTTTATCTTGGCTAAGGCATATGCTG TGAAAGAAAAGTCCTCGGGGAATAATGGCCACTCAGAGGATGAAACTTCATTGGATATGGAAGTAAGTCTTAACTGAAAT TTTTCCACATCTACTTGGATGAACTAATCACTAGAAAAATTAGGTTCTGTTTGAAGTTGATGGGTATAGTTTGGATTGTG CTTTCAAAGATGTTTTTCAGCATATAAAGGATTTGTGAACGGTTGATTTTCATGGTCATTATTTTTACTGATTGTGAAAT GTTGTGCGTGGGTGAGTTCTTCTGGACTTGTTTGATGGGAAAATCTTGTCTGCTGGTTTATTTTTCCTGTAGACCGCTTT AGGAATAATTTAGTCCAGGCCAATGTAAAGGGTTTTTGGACGATTAATGATTTTCTTCTTACTTTGTTAGAGATCTAATA AACTATTCTTAGGTTTTGGCCTAAGATCGTTAGATTGTTCTTTATTTGTTTTTTTGAAATAAGATTGTTCTTTATTAGTT AGTACTATATTACTGAGCTTAGGCTGTTTTCGTTGTTAATTGAATACAGAAGTCTTTTTGACCATGTGGTCTATAATTCT TGTCAGTGATATTCATCATGTTACTTGATCTTGTCTTGTTCTACATTTTAATGCTGAATCAAGCATAACCTGTAGCATTT TCATATGATGGTTTTGCAAAATGAATGTCCATTTAACTTTTATCACCGATTTAATATAGGTTTAATTCTGGTAATAGATT GTCTGGCTTGAGCATGAGGTTTGGGCGAAATTACTGTAACTATTTATGCAGGGGAGTTCGCTCCAGATCAGGAAAAGTAA AACATGTCTTACAGAGTGCATCTATTATTGGTTCTAATTCTAAGTGCTTGCAGTTTGTTGGTTGTCACTATAAGTTCAAG TGTATAAAAAATTAAAAATATTCATATGTATAGAAAGAAACGTGATCCTTGACATCAATGTTTCTATTTTGCTGAAATTG AAGGCTTGAAGTTATTTTTAAAATCCTTTTATCGCTATGATGAGATTGGTACAGCTAATAAACTTTGCAATTGCTGCTTG TTTTCAGCTTGCTGCTTGACCTTCAACAGTTTATTTATATTATAGCAATGGTGTTGTGGACATTAATGATGATGATGTTC TGCATTGTTATGTTCTAGGATGATATTGTTGCAAGGATTGAAGAAAGAATTTCAGTTTGGACTTTTCTTCCTAAAGGTAT GTGTTTGACTGTTTGGCAAGTCGAAGCCAGTATTTGTGTGTCTGTGCTCTGTGATAAATAATGATACATTCATACACATT CTAATATGTGATCGATCATCTTGTTTTCGGCAAACCATTTCTACTAGAGAATAGCAAACCTTTGCAGGTCATGCATTATG AACCTGAACAGGAAGGGAATAACTTAGATTATTTTGCAAACAAAACCAAAGTGGAATTAAGTGGACCTTTACTGGCAACA GTTGTTTTATATCTCTCAAATGCTTCTCAAGGGGGTCAAATTCTCTTTCCAGAATCAGTGGTAAAGCCATTCAGTTTTTT CTTCCTTGTTCTATTTATTATCTACCTAGTTCTGGACCTGTTTTTACTGTTTAATCATTAATTGCGTGTGATATTTTCCA GCCCAATAGTATTAGCTGGTCAAATTGTAGAAGCAGTAGTAAGATTCTCCAACCAGCAAAAGGGAATGCACTTCTGTTTT TCTCTCTTCATCCAAGTGCATCTCCGGACAAGAGTAGCTACCATGCTAGGTGCCCTGTCCTTAAGGGTGATATGTGGTCT GCAATTAAGTTCTTCTATGCAAGATCAATTAGTGGAGGGAAACTCTCAACCATATCAGATGGTGGTGAATGTACTGATGA GGATGACAGCTGTCCTGCTTGGGCAGCCATGGGAGAATGTCAGAGAAATCCTGTGTACATGATTGGGTCTCCTGATTATT ATGGTACATGTAGGAAAAGCTGTAATGCATGCTGATCAGAAGTTCTGCATGTTTGGTTTTGCTTCTAGCAAGCCAGAATT TATTCTATTGTGTGAGAAGCTACAAGGAGTTGCTTCTCAAAATTAGAATCCATTATGTGCTATTGTGTGAGAAGATTGAT TCTTCAAAAATGCTAGTTGACTATCCACATAAATTATTTAGGTAGTTGTTATTAACACGCCCTCCTCGTCATCTAATATA ACAACTGCCAATTATTTAATACTTTTTTAAGTAATTAAAAGCATTTAATAGCAAGCATTAAACATTCTTTAACTAATGCT CTTAGGACACATTCACAAAACCCTTTCTATGATGTTTCATAATTCCTACCTCTCCTCAACCTGCAAACAGCATTAGTTTT TCTGTGGATTGCATGTAAGCAATACATGTAGAAATAGGAATTTCTTAAGAATTGCCTCACGACCTTCTGATCTGCAATTA AGGGGTAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0140400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGATGATATTGTTGCAAGGATTGAAGAAAGAATTTCAGTTTGGACTTTTCTTCCTAAAGAGAATAGCAAACCTTT GCAGGTCATGCATTATGAACCTGAACAGGAAGGGAATAACTTAGATTATTTTGCAAACAAAACCAAAGTGGAATTAAGTG GACCTTTACTGGCAACAGTTGTTTTATATCTCTCAAATGCTTCTCAAGGGGGTCAAATTCTCTTTCCAGAATCAGTGCCC AATAGTATTAGCTGGTCAAATTGTAGAAGCAGTAGTAAGATTCTCCAACCAGCAAAAGGGAATGCACTTCTGTTTTTCTC TCTTCATCCAAGTGCATCTCCGGACAAGAGTAGCTACCATGCTAGGTGCCCTGTCCTTAAGGGTGATATGTGGTCTGCAA TTAAGTTCTTCTATGCAAGATCAATTAGTGGAGGGAAACTCTCAACCATATCAGATGGTGGTGAATGTACTGATGAGGAT GACAGCTGTCCTGCTTGGGCAGCCATGGGAGAATGTCAGAGAAATCCTGTGTACATGATTGGGTCTCCTGATTATTATGG TACATGTAGGAAAAGCTGTAATGCATGCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0140400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDDIVARIEERISVWTFLPKENSKPLQVMHYEPEQEGNNLDYFANKTKVELSGPLLATVVLYLSNASQGGQILFPESVP NSISWSNCRSSSKILQPAKGNALLFFSLHPSASPDKSSYHARCPVLKGDMWSAIKFFYARSISGGKLSTISDGGECTDED DSCPAWAAMGECQRNPVYMIGSPDYYGTCRKSCNAC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10869
1 193 193 1.6E-89 –
Gene3D
G3DSA:2.60.120.620
1 138 138 2.0E-29 –
PANTHER
PTHR10869:SF102
1 193 193 1.6E-89 –
Pfam
PF13640
28 138 111 1.2E-7
IPR005123
SMART
SM00254
155 196 42 1.2E-4
IPR003582
ProSiteProfiles
PS51670
156 196 41 9.711
IPR003582

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0140400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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