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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0144800 |
| Transcript ID | LotjaGi2g1v0144800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein; TAIR: AT3G04070.2 NAC domain containing protein 47; Swiss-Prot: sp|Q84TD6|NAC47_ARATH NAC transcription factor 47; TrEMBL-Plants: tr|M0RHR2|M0RHR2_MUSAM Uncharacterized protein; Found in the gene: LotjaGi2g1v0144800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52445188..52446728) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTCATTATCTCTGTTATTATGATTATCATGATCTTATTGTAATCTGAATATGATAAGTAAATCTAACGTCATAATAA TATTCACATTTTTTTATAGGTAAATATTAGTCATTAATTGTTTGTAAATTAGTTCATTCTTTAAGATTTGAACCATAACC CTTCATCCTGCAAATCTCTTCATTCCCTTAATTAGCTGATCACCAAGTGATTCACATATACACTCTTATATATTGATTTC CTTTTGCTCTTCATCGATCATTTCCTTTTACTCTTCGACAATGGACAATCAACGAGTACGAGACTTCATGATCAACAAGT TACCACCGGGTTTCAAATTCAACCCTGATGATATTGAATTAATCCAGTATTATCTGAAGCCCAAGATAGCTGGTGATCCG ATTCTAGTTCCTCGTCGAATTCATGATATTGATATTTACAAGCATTCTCCATATGAACTAGGTGGTTGATTATATACATT TACAACATATTTTCCCTTCTTTAGAGTTTTGGGGTCAGTAATTTTATTGAATGTGTAATTAATCTTGTTCTTTTTCTTGA TGCAGAAACATATAAGTACAGAGGAGAGAAGTATATATACTTCTTTACTCCAAGAAACAAGAAATATCGAAACGGAACGC GTCCTGATCGTGCTACTGGGGACTTTGGTTATTGGAAAGCTACTGGAAAAGAAGAATCAATAAGAACAAATAATGGCAAT ATTGTGATTGGATCTAAAAGGAATTTAGTTTATATGGAAGGAAATCCTAACAGATCCAAAGAAAGAAAAGGAGAAGAGCT TAGTGCTGTGAAAACAAATTGGATGATGCAAGAATACACAATTAATAAAGAGATCAATGATTCTGCGATTTCAAAGGCGA CATCTCCATTGTCTGAGGTAACCTCGATCACTTTTCTTATATTATATACTGTTAGTGCATGCAAATTAAATCGTTATAGA TACAAAAGAATATTACTCTTATATGCATGTTTATGTTTGTACGCAGATGCATTTGGACGATTGGGTTCTATGCAAGATTT ACAAGAACGATCGTGAGAATTATCCACAAAAACGGAAACATCAAGAAGTCGAAGAATTGAATACATTGTAAAAATCTCCA AAAGTTCAAACTAATGAAGCTTCTCTAGCTGGTATAAATGTTATACATTGAAATTTGAATTTGTTGATTCAGTTGCCACT AAAAAATGGTACAAACTGTAACGGTTTTATTTTGCTTGTTCTTTTAATTTGGTGGCGCTCTTAACCACGTACCCCATTAT GCATTTACATTACCAACCTATATGCGTGCCCTCCCTCACGCTATCGCTCTCAAAATTTTACTCCGAACCCTCATTGACCA TGACTCTCTCTCGCACTTTCCCCCATACTCATACTCATACTCGTGAGGAACATTGAACCACTATGATTTGGAGCTCTTTC GTGAGTTCATCGCATATGAAGAAGTTCGAGTCTCTCACACACTACCTCTTAGTGAATAATTGAGAAGTCTCCAATTCAGA TTTTGAGTTTGAGTCTCTTGC
CDS sequence (LotjaGi2g1v0144800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAATCAACGAGTACGAGACTTCATGATCAACAAGTTACCACCGGGTTTCAAATTCAACCCTGATGATATTGAATT AATCCAGTATTATCTGAAGCCCAAGATAGCTGGTGATCCGATTCTAGTTCCTCGTCGAATTCATGATATTGATATTTACA AGCATTCTCCATATGAACTAGAAACATATAAGTACAGAGGAGAGAAGTATATATACTTCTTTACTCCAAGAAACAAGAAA TATCGAAACGGAACGCGTCCTGATCGTGCTACTGGGGACTTTGGTTATTGGAAAGCTACTGGAAAAGAAGAATCAATAAG AACAAATAATGGCAATATTGTGATTGGATCTAAAAGGAATTTAGTTTATATGGAAGGAAATCCTAACAGATCCAAAGAAA GAAAAGGAGAAGAGCTTAGTGCTGTGAAAACAAATTGGATGATGCAAGAATACACAATTAATAAAGAGATCAATGATTCT GCGATTTCAAAGGCGACATCTCCATTGTCTGAGATGCATTTGGACGATTGGGTTCTATGCAAGATTTACAAGAACGATCG TGAGAATTATCCACAAAAACGGAAACATCAAGAAGTCGAAGAATTGAATACATTGTAA
Protein sequence (LotjaGi2g1v0144800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNQRVRDFMINKLPPGFKFNPDDIELIQYYLKPKIAGDPILVPRRIHDIDIYKHSPYELETYKYRGEKYIYFFTPRNKK YRNGTRPDRATGDFGYWKATGKEESIRTNNGNIVIGSKRNLVYMEGNPNRSKERKGEELSAVKTNWMMQEYTINKEINDS AISKATSPLSEMHLDDWVLCKIYKNDRENYPQKRKHQEVEELNTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 199 | 190 | 1.3E-61 | – | |
| PANTHER | 10 | 199 | 190 | 1.3E-61 | – | |
| SUPERFAMILY | 10 | 184 | 175 | 6.8E-46 | ||
| ProSiteProfiles | 14 | 185 | 172 | 44.695 | ||
| Pfam | 15 | 152 | 138 | 8.9E-30 | ||
| Gene3D | 23 | 190 | 168 | 5.3E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0144800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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