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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0145700 |
| Transcript ID | LotjaGi2g1v0145700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G78750.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750; TrEMBL-Plants: tr|I1L396|I1L396_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0145700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52525454..52529338) extracted from Lotus japonicus Gifu genome v1.2.
GAATACATGGGGTGCCAAACCCAATAGGTGGGGTGCCAAACCCAAATCCCGTTTCAACACCGATTGTCATATGTGAACTT GGCTTCCGTTTTTCTTCCACCGATTCACATTTTCAGGATTTGACGGAAAGCCTCAAGTGATTCTGGCTAGTTTCTGGAGG AATTGATTTGGATCTGCAACTCAGTTGAATTCATCACATCCTCAACCAGCTCAAAGAGGTATCTGCACTGTTCAATTCTT CCTTCTTAACAAAACTTCATCAATAACTTTAGGAATCTATGCCTTTGACCATTCTTGATCTTTGTATTGCTTTGTTTTGT ACCTTCTGTTTTCCACTGCTGAACACCATCACCAATTGAGGAGAAAATGCATACCCTAAATTTTTGTGCATTTTATTGGA AATACAAATTTTAGGGGATTGTAAATTTTTTATTTTTGTATTTTATTAGCTACTACAACCATTTGATCTTTTTTTTTTTC CTTTTCTAATTTTTTTCTTTCAGTATTGTAATGTAAACAGAATTTATGATATATTTGTCAATTTTACAGCTCAGGAGTGA GTGTAGGAAAAAGAAAATTGGGGAAGTTGAAGTGAAGGATGGAGGGTGAGAGAGATGGAAAAGAGGAAAGAGACAGACTC AGTGACTTGCCTGACTTAGTTTTGCTTCATGTTTTGAAATTTATGAGCACAAAACAAGCTGTTCAGACTTGTGTATTGTC CACAAGATGGAAGGATCTCTGGAAAGGTGTCACTACTCTTGCATTGAATTCCTCCGACTTCGCCACCGCGCCCCGTTTCA GCGAGTTTCTGTCTTGCGTTCTGTCTCACCGGAACGACTCAGTTTCCCTGCATAATCTTGATTTGAGGCGCAAAGGTTGC GTTGAGCCGGAACTCCTCAACAGGGTCATGAGCTATGCTGTGTCACATGATGTCCAGAGCTTGACAATAGAATTTAATTT GTATTTAAAACTTGGTTTTAAGCTGCACCCTTGCATCTTTTCGTGTCGGACATTGACATATCTTAAGCTTTCCATTTGGG CTATCCCTTCGATGACAGAACTTCCAAATTCACTGCAGTTGCCAGCATTACATAGCTTGCATCTTGAGTATGTTACTTTT ACTGCTGATGACAGTGGCTGCGCTGATCCCTTTTCAACTTGTCCCATGTTGAACACTTTGGTTCTTGACCAATGTAACCT ACATCGTGATGCTAAATTCCTCTGCATATCTAATTCTAATCTTTCAAGTTTGACCATAGCTAGTACCATTCAAGAAGTGG ACTACAAAATCGTGCTTTCTACTCCAAACCTTAGTTCTCTCTCCATCACGCGTTATCCTATTCACCAAGTGTCCGCGTGC GATCTTTCTTATCTCGAACAAGTAAATATTGACGTTGAAGCCCATTTTCATACTAATTCTGAGAGGACACATTTAGCCCT GATTAGTTGGCTGGAAGTGCTTGCTAGCTATGTGAAGATAATGGTACTCTCTTCAAGTACCCTTAAGGTACTAAATGTAA GTTTCTTTCGTATGTTTTCTCCTTCTTATTTTTTATATTGCTAATAAGTTGTAATAGATTCCTTATGTCAAATTTCATTC CAATGCTTAATCTTAATATTCAGATTATCCTCCAAAATATTTCTAATTCACTCTCATTGTGTAGGTTCTCTCTTCTTCTG GTTCAACGATGAGCCAACTTCCTTGCTTTGTTAGATTGAAGTCATTGAAATTGAAAATGAAATCTTCTTCCTATATATCT GATGAGGAAGTAAGCAGGATAGTGGAGTGCTTGGTTCGAAACTCTCCACTGGTCGAAGTTGATATTATAGATTGCTGAGT GATATGCAGGCTAAACTCTTCAGGTAGAGAACTAGAGATTTTAAACTTTTTTAGTTTTTGCTTCATTTTTTTGTTTCCCT TCCTCCCGTATGCTCTAAATTTTAGGATGCTATATTATGAGCACCTTGTTATGCCTCTTAAAGATTTTATTATACATCAC CTGTGGGGAACATGAAGCAGCGTACACATGGTTTACCCTTTTAATGTCTCAAATATCTTTACTGTTTGGCTTATGACTAG CAAACAGCAAGTTTCTATATTGTTTCAACTAGTGCTAGTTTATGTGTGGATGAGGGAAATGTTGCTCTTGACGTTAGAAT TGGCTAATTAGAGGTAAAAAATTAACAATAGAGGAACTATTTAAATGTGGAAAAAGATGGTAAGTAAGATCTTCTACTTA CAATTGAGTTGAGGGTTCATCAAGAAAAAAAGTATTTATTTGGGTGCTTTTTAAATTGCAAAAATATTCTTTAGTGGCAA TCAATTTGAACTGTCTTTGAAATTTTTTATTTCTGTTATAATCATCATAATTTAGGTCACACTCGAATAACAAATATGCT GAAGAAGAATGACCACTTAACCGGCTAAAGAATCTAAAGTGTCTTTGCTTGCTGGTGTTGTATGCTGAATCATCATTTGT CAAGTTCCACGTCATGAAAGTGGATCAATTGTTTTTACTGTGATTTAGGCTAAGAATGATACTTCGTCATTAATATGCTC AATTACACAAGTAACACAACTAAATTTTAGACAAATTTACAATCCCCCAGTACTAGTACTCCTCTAAACGATGACACATG TTCCATGTATGGTTAGTTTTCCTTTTTTTCAAATATTAAATGGAGAGAAACTTTCAATTGAATGTAGTTTATGAAGAGGG AGTACTGATTATTCAGTCCTCCATGCAGGATTGAAAAGTTGTTCCTAAATATTTTATGGTTAGCTTCACAGCAGATCTAG ATATGATCTTTTTGGGAAGCATTTAGTTAAGATATAGATTTAAGATGAGATAATAAAATCCTTATAGTTTCATGGATTTT TAACTTGTAATTTGTTTTTAGAAGTTTGTAATGAAGGAAAATCACATGTACTAGGATAGGCTTAGGATTCAATTATGACC AATTGGTAATGGATGAATTTTAATTTAGACTTTTAAAGGTTATTGTTTCTTTGTTTTTCACTTTACAAAAATGTCACTTT GATTCCTATTAACAAGATTTTCTGAAAGAAATGGTGAAAACAACAAAAGTTTGTTTTTAGGATTACCTTTTACAGAATTC ATCCAGAAGTAATATGACAAATTTGATGTGTTTTCATATTTGAGGGTGCTGAATGGATTGGTGTTCAAAAACTAACTTTG TTGTTTCTAACCGCGGAAGATGATTATCCTAGTTTCTCATACTTTCTGGTTATTTTGAATTCTGAATTTGACCAACAGTT CTCTGCAGTTTGGCTGTGATTTTGATACCATGTTATAACTGATAACTTACTTTTGGACAGGTCATCAGAGTTCTGAGATG AGATTATCTCTCTCCAGCAGATAAAACCAAACCTAGGCCCAAACACAACAGGTCCATTGACTCTAATTTTAAACCCTAAT ACTACTTTCTGTTACATTAAAAGTTAGACTCAGATCATGCTGTGGTGAATGTCATTAAACTGATACTGAGAACAAAGAAT AAGGGGGATGTCATTGAGCCCCACACTATAATTTGCTGAAAAAGCATTGATCACATATTCACATGTTACTACAGGTAGAT AATATTTCCTAGCCAGAATGTATTGCCATAAGACATGGCAGATTTGGAGAAGTAAAAAGGGTTTCATTTGCATGTATTAT TTAAATATTGATTAAACCAATATTAATCAAGCCTTTTTTTACCTCCTAAAGTAGCTATTCCTTTTTAAATTTTATAGATT GGCTAATAACAAAAATAAAATCAACAGGAATTTGCACACCGTAGTTTTTAAGGATATAATCCTTGAGCGTGACTTGGATC AACATTGTCAAAATTAACTTAAAGTAGATCAACATTGTCAAAATT
CDS sequence (LotjaGi2g1v0145700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTGAGAGAGATGGAAAAGAGGAAAGAGACAGACTCAGTGACTTGCCTGACTTAGTTTTGCTTCATGTTTTGAA ATTTATGAGCACAAAACAAGCTGTTCAGACTTGTGTATTGTCCACAAGATGGAAGGATCTCTGGAAAGGTGTCACTACTC TTGCATTGAATTCCTCCGACTTCGCCACCGCGCCCCGTTTCAGCGAGTTTCTGTCTTGCGTTCTGTCTCACCGGAACGAC TCAGTTTCCCTGCATAATCTTGATTTGAGGCGCAAAGGTTGCGTTGAGCCGGAACTCCTCAACAGGGTCATGAGCTATGC TGTGTCACATGATGTCCAGAGCTTGACAATAGAATTTAATTTGTATTTAAAACTTGGTTTTAAGCTGCACCCTTGCATCT TTTCGTGTCGGACATTGACATATCTTAAGCTTTCCATTTGGGCTATCCCTTCGATGACAGAACTTCCAAATTCACTGCAG TTGCCAGCATTACATAGCTTGCATCTTGAGTATGTTACTTTTACTGCTGATGACAGTGGCTGCGCTGATCCCTTTTCAAC TTGTCCCATGTTGAACACTTTGGTTCTTGACCAATGTAACCTACATCGTGATGCTAAATTCCTCTGCATATCTAATTCTA ATCTTTCAAGTTTGACCATAGCTAGTACCATTCAAGAAGTGGACTACAAAATCGTGCTTTCTACTCCAAACCTTAGTTCT CTCTCCATCACGCGTTATCCTATTCACCAAGTGTCCGCGTGCGATCTTTCTTATCTCGAACAAGTAAATATTGACGTTGA AGCCCATTTTCATACTAATTCTGAGAGGACACATTTAGCCCTGATTAGTTGGCTGGAAGTGCTTGCTAGCTATGTGAAGA TAATGGTACTCTCTTCAAGTACCCTTAAGGTTCTCTCTTCTTCTGGTTCAACGATGAGCCAACTTCCTTGCTTTGTTAGA TTGAAGTCATTGAAATTGAAAATGAAATCTTCTTCCTATATATCTGATGAGGAAGTAAGCAGGATAGTGGAGTGCTTGGT TCGAAACTCTCCACTGGTCGAAGTTGATATTATAGATTGCTGA
Protein sequence (LotjaGi2g1v0145700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGERDGKEERDRLSDLPDLVLLHVLKFMSTKQAVQTCVLSTRWKDLWKGVTTLALNSSDFATAPRFSEFLSCVLSHRND SVSLHNLDLRRKGCVEPELLNRVMSYAVSHDVQSLTIEFNLYLKLGFKLHPCIFSCRTLTYLKLSIWAIPSMTELPNSLQ LPALHSLHLEYVTFTADDSGCADPFSTCPMLNTLVLDQCNLHRDAKFLCISNSNLSSLTIASTIQEVDYKIVLSTPNLSS LSITRYPIHQVSACDLSYLEQVNIDVEAHFHTNSERTHLALISWLEVLASYVKIMVLSSSTLKVLSSSGSTMSQLPCFVR LKSLKLKMKSSSYISDEEVSRIVECLVRNSPLVEVDIIDC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 358 | 351 | 6.3E-99 | – | |
| PANTHER | 8 | 358 | 351 | 6.3E-99 | – | |
| Gene3D | 9 | 288 | 280 | 3.3E-22 | ||
| SUPERFAMILY | 10 | 54 | 45 | 1.83E-9 | ||
| ProSiteProfiles | 11 | 47 | 37 | 8.57 | ||
| Pfam | 13 | 50 | 38 | 4.3E-7 | ||
| SUPERFAMILY | 81 | 360 | 280 | 3.22E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0145700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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