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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0152600 |
| Transcript ID | LotjaGi2g1v0152600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin receptor GID1, putative; TAIR: AT5G62180.1 carboxyesterase 20; Swiss-Prot: sp|Q0ZPV7|CXE1_ACTER Carboxylesterase 1; TrEMBL-Plants: tr|I3SZC0|I3SZC0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0152600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:54964540..54966844) extracted from Lotus japonicus Gifu genome v1.2.
CGAGCATTTGCAATCACCTCACTTTTAATTTGAAGTTTTTGATTGCTACAATTAGAAGTTTAGTAGATCATGTTTTTTGA TGATTGTAGACCGCCTGAAAGAAGGTAGGTGTGGCGGGTGGTTAATACTATAGATTCATGATTTTTTTGAAAGGTGAATT AGTTATAGGGAGAGATTTGTCCGCTAGCAATCTAGAACATGAGGCACAGATAAACACTACTTGTAAACAAAAAAGAAAAG TTGACAGATTTGTCTGCTAGCTATTTAGAATCAGAGGCTCAGAAAAACGCCAACAGGATAAAGATATTAACAAGAGTTTA TTCCCCTTTCAAGTTTCAATTGAGCAGGTTATTAATTCCTCTTCTTTCGCACATAGTTTTCTAAAATCCACCATGCCCAT CTTTCCCTTATCAAACTCTAAATGCTCTTATGCAACCTTAATTACATTTGCAATATTCTCCTCAACTTTCCTCTTCATAG TAAATTCATCCACACCTAATTCATGTAACGATCCTTACAAGCAACTAAACCTCATCCATAACCCGAATGGTTCAGTCACT CGCCCAAACAAGCCTCCAGAGAGCCCTCCCTCACTGAATCCCACCCTCCCCGTGCTCTCCAAGGACCTCACCATCAACAA ATCAAAGGGCACATGGGCAAGGATCTACCTACCCCGCAAAGCACTGGACCATAGCTCTAAGCTTCCCTTGGTGGTTTTCT TCCATGGAGGAGGGTTCATCTTCCTCAGTGCAGCCTCAACAATCTTCCATGTTTTCTGCTTCAACATGGCTAACGATGTT GAAGCGGTGGTTGCGTCCGTAGAGTACCGTCTCGCACCAGAACATAGACTCCCCGCGGCGTATGATGATGCTGTGGAGGC GCTGCACTGGATCAAAACCAATCAAAAAGATGATTGGCTCATCAACCATGTTGAGTATTCTAATGTGTTTCTCATGGGTG GTAGTGCAGGAGGAAACATAGCCTACAACGCGGGCTTACGTGCAACTGCTGGAGATAAACAAGTTTCTAACATCCAAGGG CTGATATTGGTTCAACCATTTTTCAGTGGGACCCTTAGGACCGGTTCAGAATTGAGGATGGTGAATGATTCTCATCTGTC ACTGTGTTCTAATGACATGCTGTGGGAGTTATCTCTACCCGTTGGAGTCAACCGTGATAATGAGTATTGCAATCCTGCGG TGGGGAACGGTCCTGTGAGATTGGAAGAGATCAAACGGCTTGGATGGAGGATATTAGTGACCGGCTGTTCGGGTGACCCG CTCATGGATCGGCAAGTGGGGCTGGTGAGGTTGATGCAGAAGGAGGGTGTGAGAGTTGTGGGACATTTCACGGAAGGAGA TTATCATGGTGTCCAAGACAGTGAGCCTTTGAAAGCAAAGCAACTCTTTGTGGTAATCAAGAGGTTTATTTCATCTTTGC CTCCCTAGGATTATATGAAGCACTATCTTTCATATATAGTTGTTATTTTATCTTTCCAATTAACCTTGTAATTCTTATTG AGAAGTTGACACTTTTATACAGTAGAAAAAGATCAAGTCGTGGTTTATCGACTACCCAATATGTCAAGTTCAAAAAAAAA AAAAGACTACCCAATATGTCTTAATTACTATATATTTATCAACTAGAGAGCCATAATTAGATGAACTCAGCATAAGTACA TAATATCTTTCAAAAAAAAAAACATATATACAAAATATTTTTTGTTTTGTCTAATAATATCCATGGGTTTCAGTTATGAC CCGGCCCAATGTTTTGAACACAATGTCTCAGTCACCATTGTGAGAGATTGATGGCACTGTGCTATTGATGGGCCAACCTC TTCTACCACCACAGCCCAAACGTATGCTGATGAAGTTTAGTGGAATTAGTAGTTTGTTTGATTAATTTTATGAAATTAGT TACTACTATTCTAGAATGCTCCATTTAAGAGGATGGAGTCACTTGTAAGGTTATCATTACTTTAGAAATGACCCTTTCAG TATAAATATGTATTTCCCTTTCATGAATGATAACAAGAAAATTGATCAAGTCTTTATTTTCTATCTTTTTCTTATCTTTT TCTAAGTTTTGATTTCAGGATTCCTCGTGTTTTTCCTTGATAGAAATTAACTTCCTATCAGAGACTATTCATAACGCATC AAATCATGGCTAGCTAGAAATGGCGATATGGGTCAATCCGCCCCATCCCAACTTCAACTCGCAAAAAAGAGCAGGGTGGG TTGACCCATTTTTTAAAATGGGTTGAAGATCTCAACTCAACCCAGCATTAATTAAGTTGAGTTTG
CDS sequence (LotjaGi2g1v0152600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCATCTTTCCCTTATCAAACTCTAAATGCTCTTATGCAACCTTAATTACATTTGCAATATTCTCCTCAACTTTCCT CTTCATAGTAAATTCATCCACACCTAATTCATGTAACGATCCTTACAAGCAACTAAACCTCATCCATAACCCGAATGGTT CAGTCACTCGCCCAAACAAGCCTCCAGAGAGCCCTCCCTCACTGAATCCCACCCTCCCCGTGCTCTCCAAGGACCTCACC ATCAACAAATCAAAGGGCACATGGGCAAGGATCTACCTACCCCGCAAAGCACTGGACCATAGCTCTAAGCTTCCCTTGGT GGTTTTCTTCCATGGAGGAGGGTTCATCTTCCTCAGTGCAGCCTCAACAATCTTCCATGTTTTCTGCTTCAACATGGCTA ACGATGTTGAAGCGGTGGTTGCGTCCGTAGAGTACCGTCTCGCACCAGAACATAGACTCCCCGCGGCGTATGATGATGCT GTGGAGGCGCTGCACTGGATCAAAACCAATCAAAAAGATGATTGGCTCATCAACCATGTTGAGTATTCTAATGTGTTTCT CATGGGTGGTAGTGCAGGAGGAAACATAGCCTACAACGCGGGCTTACGTGCAACTGCTGGAGATAAACAAGTTTCTAACA TCCAAGGGCTGATATTGGTTCAACCATTTTTCAGTGGGACCCTTAGGACCGGTTCAGAATTGAGGATGGTGAATGATTCT CATCTGTCACTGTGTTCTAATGACATGCTGTGGGAGTTATCTCTACCCGTTGGAGTCAACCGTGATAATGAGTATTGCAA TCCTGCGGTGGGGAACGGTCCTGTGAGATTGGAAGAGATCAAACGGCTTGGATGGAGGATATTAGTGACCGGCTGTTCGG GTGACCCGCTCATGGATCGGCAAGTGGGGCTGGTGAGGTTGATGCAGAAGGAGGGTGTGAGAGTTGTGGGACATTTCACG GAAGGAGATTATCATGGTGTCCAAGACAGTGAGCCTTTGAAAGCAAAGCAACTCTTTGTGGTAATCAAGAGGTTTATTTC ATCTTTGCCTCCCTAG
Protein sequence (LotjaGi2g1v0152600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIFPLSNSKCSYATLITFAIFSSTFLFIVNSSTPNSCNDPYKQLNLIHNPNGSVTRPNKPPESPPSLNPTLPVLSKDLT INKSKGTWARIYLPRKALDHSSKLPLVVFFHGGGFIFLSAASTIFHVFCFNMANDVEAVVASVEYRLAPEHRLPAAYDDA VEALHWIKTNQKDDWLINHVEYSNVFLMGGSAGGNIAYNAGLRATAGDKQVSNIQGLILVQPFFSGTLRTGSELRMVNDS HLSLCSNDMLWELSLPVGVNRDNEYCNPAVGNGPVRLEEIKRLGWRILVTGCSGDPLMDRQVGLVRLMQKEGVRVVGHFT EGDYHGVQDSEPLKAKQLFVVIKRFISSLPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 39 | 39 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| PANTHER | 21 | 341 | 321 | 8.0E-174 | – | |
| PANTHER | 21 | 341 | 321 | 8.0E-174 | – | |
| Phobius | 31 | 103 | 73 | - | – | |
| Gene3D | 42 | 349 | 308 | 1.5E-79 | ||
| MobiDBLite | 50 | 71 | 22 | - | – | |
| SUPERFAMILY | 61 | 335 | 275 | 6.18E-49 | ||
| Phobius | 104 | 128 | 25 | - | – | |
| ProSitePatterns | 107 | 123 | 17 | - | ||
| Pfam | 107 | 327 | 221 | 2.6E-46 | ||
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 129 | 351 | 223 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0152600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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