Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0152600 |
| Transcript ID | LotjaGi2g1v0152600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin receptor GID1, putative; TAIR: AT5G62180.1 carboxyesterase 20; Swiss-Prot: sp|Q0ZPV7|CXE1_ACTER Carboxylesterase 1; TrEMBL-Plants: tr|I3SZC0|I3SZC0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0152600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:54964815..54966510) extracted from Lotus japonicus Gifu genome v1.2.
TTCAATTGAGCAGGTTATTAATTCCTCTTCTTTCGCACATAGTTTTCTAAAATCCACCATGCCCATCTTTCCCTTATCAA ACTCTAAATGCTCTTATGCAACCTTAATTACATTTGCAATATTCTCCTCAACTTTCCTCTTCATAGTAAATTCATCCACA CCTAATTCATGTAACGATCCTTACAAGCAACTAAACCTCATCCATAACCCGAATGGTTCAGTCACTCGCCCAAACAAGCC TCCAGAGAGCCCTCCCTCACTGAATCCCACCCTCCCCGTGCTCTCCAAGGACCTCACCATCAACAAATCAAAGGGCACAT GGGCAAGGATCTACCTACCCCGCAAAGCACTGGACCATAGCTCTAAGCTTCCCTTGGTGGTTTTCTTCCATGGAGGAGGG TTCATCTTCCTCAGTGCAGCCTCAACAATCTTCCATGTTTTCTGCTTCAACATGGCTAACGATGTTGAAGCGGTGGTTGC GTCCGTAGAGTACCGTCTCGCACCAGAACATAGACTCCCCGCGGCGTATGATGATGCTGTGGAGGCGCTGCACTGGATCA AAACCAATCAAAAAGATGATTGGCTCATCAACCATGTTGAGTATTCTAATGTGTTTCTCATGGGTGGTAGTGCAGGAGGA AACATAGCCTACAACGCGGGCTTACGTGCAACTGCTGGAGATAAACAAGTTTCTAACATCCAAGGGCTGATATTGGTTCA ACCATTTTTCAGTGGGACCCTTAGGACCGGTTCAGAATTGAGGATGGTGAATGATTCTCATCTGTCACTGTGTTCTAATG ACATGCTGTGGGAGTTATCTCTACCCGTTGGAGTCAACCGTGATAATGAGTATTGCAATCCTGCGGTGGGGAACGGTCCT GTGAGATTGGAAGAGATCAAACGGCTTGGATGGAGGATATTAGTGACCGGCTGTTCGGGTGACCCGCTCATGGATCGGCA AGTGGGGCTGGTGAGGTTGATGCAGAAGGAGGGTGTGAGAGTTGTGGGACATTTCACGGAAGGAGATTATCATGGTGTCC AAGACAGTGAGCCTTTGAAAGCAAAGCAACTCTTTGTGGTAATCAAGAGGTTTATTTCATCTTTGCCTCCCTAGGATTAT ATGAAGCACTATCTTTCATATATAGTTGTTATTTTATCTTTCCAATTAACCTTGTAATTCTTATTGAGAAGTTGACACTT TTATACAGTAGAAAAAGATCAAGTCGTGGTTTATCGACTACCCAATATGTCAAGTTCAAAAAAAAAAAAAGACTACCCAA TATGTCTTAATTACTATATATTTATCAACTAGAGAGCCATAATTAGATGAACTCAGCATAAGTACATAATATCTTTCAAA AAAAAAAACATATATACAAAATATTTTTTGTTTTGTCTAATAATATCCATGGGTTTCAGTTATGACCCGGCCCAATGTTT TGAACACAATGTCTCAGTCACCATTGTGAGAGATTGATGGCACTGTGCTATTGATGGGCCAACCTCTTCTACCACCACAG CCCAAACGTATGCTGATGAAGTTTAGTGGAATTAGTAGTTTGTTTGATTAATTTTATGAAATTAGTTACTACTATTCTAG AATGCTCCATTTAAGAGGATGGAGTCACTTGTAAGGTTATCATTACTTTAGAAATGACCCTTTCAGTATAAATATGTATT TCCCTTTCATGAATGA
CDS sequence (LotjaGi2g1v0152600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCATCTTTCCCTTATCAAACTCTAAATGCTCTTATGCAACCTTAATTACATTTGCAATATTCTCCTCAACTTTCCT CTTCATAGTAAATTCATCCACACCTAATTCATGTAACGATCCTTACAAGCAACTAAACCTCATCCATAACCCGAATGGTT CAGTCACTCGCCCAAACAAGCCTCCAGAGAGCCCTCCCTCACTGAATCCCACCCTCCCCGTGCTCTCCAAGGACCTCACC ATCAACAAATCAAAGGGCACATGGGCAAGGATCTACCTACCCCGCAAAGCACTGGACCATAGCTCTAAGCTTCCCTTGGT GGTTTTCTTCCATGGAGGAGGGTTCATCTTCCTCAGTGCAGCCTCAACAATCTTCCATGTTTTCTGCTTCAACATGGCTA ACGATGTTGAAGCGGTGGTTGCGTCCGTAGAGTACCGTCTCGCACCAGAACATAGACTCCCCGCGGCGTATGATGATGCT GTGGAGGCGCTGCACTGGATCAAAACCAATCAAAAAGATGATTGGCTCATCAACCATGTTGAGTATTCTAATGTGTTTCT CATGGGTGGTAGTGCAGGAGGAAACATAGCCTACAACGCGGGCTTACGTGCAACTGCTGGAGATAAACAAGTTTCTAACA TCCAAGGGCTGATATTGGTTCAACCATTTTTCAGTGGGACCCTTAGGACCGGTTCAGAATTGAGGATGGTGAATGATTCT CATCTGTCACTGTGTTCTAATGACATGCTGTGGGAGTTATCTCTACCCGTTGGAGTCAACCGTGATAATGAGTATTGCAA TCCTGCGGTGGGGAACGGTCCTGTGAGATTGGAAGAGATCAAACGGCTTGGATGGAGGATATTAGTGACCGGCTGTTCGG GTGACCCGCTCATGGATCGGCAAGTGGGGCTGGTGAGGTTGATGCAGAAGGAGGGTGTGAGAGTTGTGGGACATTTCACG GAAGGAGATTATCATGGTGTCCAAGACAGTGAGCCTTTGAAAGCAAAGCAACTCTTTGTGGTAATCAAGAGTTATGACCC GGCCCAATGTTTTGAACACAATGTCTCAGTCACCATTGTGAGAGATTGA
Protein sequence (LotjaGi2g1v0152600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIFPLSNSKCSYATLITFAIFSSTFLFIVNSSTPNSCNDPYKQLNLIHNPNGSVTRPNKPPESPPSLNPTLPVLSKDLT INKSKGTWARIYLPRKALDHSSKLPLVVFFHGGGFIFLSAASTIFHVFCFNMANDVEAVVASVEYRLAPEHRLPAAYDDA VEALHWIKTNQKDDWLINHVEYSNVFLMGGSAGGNIAYNAGLRATAGDKQVSNIQGLILVQPFFSGTLRTGSELRMVNDS HLSLCSNDMLWELSLPVGVNRDNEYCNPAVGNGPVRLEEIKRLGWRILVTGCSGDPLMDRQVGLVRLMQKEGVRVVGHFT EGDYHGVQDSEPLKAKQLFVVIKSYDPAQCFEHNVSVTIVRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 39 | 39 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| PANTHER | 21 | 341 | 321 | 7.0E-174 | – | |
| PANTHER | 21 | 341 | 321 | 7.0E-174 | – | |
| Phobius | 31 | 103 | 73 | - | – | |
| Gene3D | 42 | 349 | 308 | 8.9E-78 | ||
| MobiDBLite | 50 | 71 | 22 | - | – | |
| SUPERFAMILY | 61 | 333 | 273 | 8.04E-49 | ||
| Phobius | 104 | 128 | 25 | - | – | |
| ProSitePatterns | 107 | 123 | 17 | - | ||
| Pfam | 107 | 327 | 221 | 2.8E-46 | ||
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 129 | 362 | 234 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0152600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…