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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0156800 |
| Transcript ID | LotjaGi2g1v0156800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT5G03760.1 Nucleotide-diphospho-sugar transferases superfamily protein; Swiss-Prot: sp|Q9LZR3|CSLA9_ARATH Glucomannan 4-beta-mannosyltransferase 9; TrEMBL-Plants: tr|I1NHP1|I1NHP1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55604628..55608308) extracted from Lotus japonicus Gifu genome v1.2.
GAAACCAAGAAAGATGGATCATACATTTGAAGGTGTGCATTATGGCATTGCAAGCCAAATGGGTTTCATTTGGCAGCAAG CCAGGGCACCCTTGATTGTTCCAGTGCTGAAATTGCTAGTAATTTTGTGCCTAGCCATGTCACTTATGTTATTTGTTGAG AAAGTTTATATGGGAATAGTCATACTCTTTGTGAAGGTGTTCAGGAACAAGCCAGAGAAGCATTACAAATGGGAACCACT CAGGGATGACATTGAGCTTGGAAACTCTGCATACCCCATGGTTCTGGTGCAAATCCCAATGTACAATGAGAAAGAGGTAT CACTATAAAGTTAATGTTGTGATATGTATTGTTCCTGAAATAGAACTAAACATATTTTGCTCGAGTTAAAATGTTTTATT TAGTGGATACTGACACTGTTCCATTGCTTGCAGGTGTATCAATTATCAATTGGTGCTGCATGTGGGTTATCATGGCCATC TGATAGAATTATTATTCAAGTTCTTGATGATTCAACAGACCCAATCATTAAGGTTGAAGTCATCCCCTACTAATAATAAC TGACCATTTGTTCATTTATCTTGCATAATTAAACAATGTTAAATGTTTATTTTCCCTTACATAATCCAATTTTGGGCTCG AAAATAATTTGTACAGTCTAGGTGATACTTAAAAATAACTTCACTCATCTAGGTAAACTTGCATGGAAGCATTTCCTTCT ACAAACAGCACTTAGCAACAAAGTTACTTTCTCAAGAAATCCCTGGCTTAAACCCATAACAAAAGAACACATCATGGTTC TGAGCATTTAACTGGTAAAGAAAAATGGTGACTATCAACCTTTGATCTTTTCAGTAAAAGAAGAAAAAAAAGATTTTTGG GTCATTCATCCCAACTAAAATCCATGTAGAAACTGACCCAATCAATATATCCATATAGTCCGAGTTTTGGATTTGGGTCT ATGTAGTCAGGGCAATCATAAATTCATGCATTCAAGTAATTTAAGTTGTTCAATCAGATCAGACGATTAATAGATTAATA GGTTTTGCCTATATAAGGCAACTTAGATAAATCATATACTCAAAATGTAAGCCATCATGTTTTGATTGAATGACTCAAAT TCCTTGACTTTGTGGATTTAAGATTTCCCTTGCCACAAAGAATCCAAACTCCCTAGTTTTGTGACCTGAGTTTTTTGCAC ACTAAACCATGCATTTTTGTTTCCTTTTATCAAAACACTACAGAATATGGTGGAGGTGGAATGTCAGAGATGGGCCAGCA AAGGCCTAAACATAAAGTATGAGATCAGGGAGAACAGAAATGGGTACAAAGCTGGGGCTCTCAAAGCAGGCATGAAGCAC AGCTATGTCAAACTATGTGACTATGTGGCCATCTTTGATGCTGATTTCCAACCTGAGCCTAACTTCCTTTGGCGTACTAT CCCTTTCCTCGCTCACAACCCACAAGTTGGGCTTGTCCAAGCTCGATGGAAATTCGGTACTGTTTTGCTCATCAATGTTA AACTTTCATGAAACCTGTGTGTTCTCCAAAGGATCTGGACTCAAAATATAGTTGTTCAGTTAAAATACTCATTTGATTAT CATTTTACATTGCATAAGTTAAAGTGATCTAGAGTCAGTGCCTTGTAGCACAAAAGTTAATTATAGCATGTTTGGGACAA CTTATTTTACTTCAGATTCAATTCTGGCACCAGAAGGTATTCAAAGAAGCTTCTCCCCAGAATTGATTTTGGCTTTCAAG TCAATTGTAGAAGAATTTTAAAAAAAATGCACTTAGACTCGTACAGATCAACAGTTAGAAAAAGAACTGATACCAATGTC TTACCAACAAAAATCTAGTAAAAGAAATCATTTCCACTTCATGTGACATAAATTTGTTACAGAGTAGAATGTAGATGCAT TTGGAAAGGTGTGAAAGTAATATTCCTTGTGCATTGCAGTTAATGCTGATGAATGCTTAATGACAAGAATGCAAGAGATG TCACTGGACTATCATTTCCTGGTGGAGCAGGAAGTTGGATCCTGCACCTATGCCTTCTTTGGTTTCAATGGTAAATCATT TCCCTATTACTGCTTGAAAAGTTTAGGAGAAAGTAATCTGTAGACACACACACACACACACACACATATATATATATTGG TAAAACCAGTTGTGTGAAAGTGGATAATGTGGCACAGGCACAGCTGGTGTTTGGAGAATTTCAGCACTAAATGAAGCTGG TGGATGGAAAGACCGTACAACAGTTGAAGACATGGACCTGGCTGTCCGAGCTGGTCTCAAAGGATGGAAATTTGTGTATC TTAGTGACCTCAAGGTATCATCAAATCACAACACTCATTTAAACTCATGGCTTCAAGATTATTTTTGTTAGGATCTTGAA GGCATAGCTGGTCAGAGTCATATTCAAACACAATTAAGTCCTCTTATCATGTATAGCCTGGCTTATGTAGGGCATGTCTC CTTTTTTACAAGGGATAAACCTCATTTGAATACTTTATGCTTGATCCTCTCCCACTTAAAACTTAAGCAAGGCAGATCAC TCATAGCATGCTTGGATCAGCTTTTATTTCCTCATAATCAATTCTCGCAATCAGAAGTTACTCACATAAACTTCTCGTCA GAATTGCCTTTAGAATCAATTGTAGAATTATTTCCAAATATGCACTGACAATTTATCTAAATAAATTTAGGTGAAAAATG AATTACCAAGCACCTTCAAAGCCTACCGCTATCAGCAGCACCGGTGGTCATGTGGCCCGGCTAATCTTTTCAAGAAAGTG GCGATGGAAATCATAAGGAACAAGGTATTAGTTTCCTTGTAATTTCTTAATCTCCCATGTCTAAAATTTGTCTTAAGAAG TTATCATCACCCATCTTCTCCTTTAATTCCTTTTTTACCATACCTTGCAGAAAGTCTCCATGTTGAAGAAATTCTATGTG ATTTACAGTTTTTTCTTTGTCCGGAAGATCATAGCCCATGTGGTCACATTTGTATTCTACTGTGTCATTTTACCAGCAAC TGTTCTAGTTCCAGAAGTGGAAGTTCCCAAATGGGGTTCTGTCTATATCCCTTCTATCATTACACTCCTTAATGCTGTTG GAACTCCAAGGTAAGCATCTTAATAGCATGTTTGGGTAAACTTTTCTTTCCCCATAATCAAATCTGAAACTCAGAAGCTA CTCGGAGAAGCTTCTCCCCATAATCAGTTCTAACTTTAAAATAAATTGTACAAGGATTCCCAAACATGCAATAGGTTTGC AGCAAAGTTTTTCTATTTCAAGTAACTTTCTGCAAACATTTTGTGCAGGTCACTCCACTTGTTGATATTCTGGATACCAT TTGAAAACGTTATGTCAATGCATAGAACCAAGGCAACACTAATAGGTTTGCTAGAAGCAGGGAGAGTAAATGAATGGGTA GTTACTGAGAAATTAGGAGATGCTCTCAAAACAAAATCAGGTGGCAAATCAGCTAAGAAGCCTCGAATCAAGATTGGCGA AAGGCAAGTTTTCTACACTTACAAGTAAAATGCAGTCCAATTTTGTTAAACTGGTCAGTGTGTGTATGGATACTAATTTA GTGTAACATTAATTTAGTGTAACATGAACGGATTTTCATCTCAATTCAAAAGAAGAGTTGTGTCCACTTTTTATCTCGAA G
CDS sequence (LotjaGi2g1v0156800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATACATTTGAAGGTGTGCATTATGGCATTGCAAGCCAAATGGGTTTCATTTGGCAGCAAGCCAGGGCACCCTT GATTGTTCCAGTGCTGAAATTGCTAGTAATTTTGTGCCTAGCCATGTCACTTATGTTATTTGTTGAGAAAGTTTATATGG GAATAGTCATACTCTTTGTGAAGGTGTTCAGGAACAAGCCAGAGAAGCATTACAAATGGGAACCACTCAGGGATGACATT GAGCTTGGAAACTCTGCATACCCCATGGTTCTGGTGCAAATCCCAATGTACAATGAGAAAGAGGTGTATCAATTATCAAT TGGTGCTGCATGTGGGTTATCATGGCCATCTGATAGAATTATTATTCAAGTTCTTGATGATTCAACAGACCCAATCATTA AGAATATGGTGGAGGTGGAATGTCAGAGATGGGCCAGCAAAGGCCTAAACATAAAGTATGAGATCAGGGAGAACAGAAAT GGGTACAAAGCTGGGGCTCTCAAAGCAGGCATGAAGCACAGCTATGTCAAACTATGTGACTATGTGGCCATCTTTGATGC TGATTTCCAACCTGAGCCTAACTTCCTTTGGCGTACTATCCCTTTCCTCGCTCACAACCCACAAGTTGGGCTTGTCCAAG CTCGATGGAAATTCGTTAATGCTGATGAATGCTTAATGACAAGAATGCAAGAGATGTCACTGGACTATCATTTCCTGGTG GAGCAGGAAGTTGGATCCTGCACCTATGCCTTCTTTGGTTTCAATGGCACAGCTGGTGTTTGGAGAATTTCAGCACTAAA TGAAGCTGGTGGATGGAAAGACCGTACAACAGTTGAAGACATGGACCTGGCTGTCCGAGCTGGTCTCAAAGGATGGAAAT TTGTGTATCTTAGTGACCTCAAGGTGAAAAATGAATTACCAAGCACCTTCAAAGCCTACCGCTATCAGCAGCACCGGTGG TCATGTGGCCCGGCTAATCTTTTCAAGAAAGTGGCGATGGAAATCATAAGGAACAAGAAAGTCTCCATGTTGAAGAAATT CTATGTGATTTACAGTTTTTTCTTTGTCCGGAAGATCATAGCCCATGTGGTCACATTTGTATTCTACTGTGTCATTTTAC CAGCAACTGTTCTAGTTCCAGAAGTGGAAGTTCCCAAATGGGGTTCTGTCTATATCCCTTCTATCATTACACTCCTTAAT GCTGTTGGAACTCCAAGGTCACTCCACTTGTTGATATTCTGGATACCATTTGAAAACGTTATGTCAATGCATAGAACCAA GGCAACACTAATAGGTTTGCTAGAAGCAGGGAGAGTAAATGAATGGGTAGTTACTGAGAAATTAGGAGATGCTCTCAAAA CAAAATCAGGTGGCAAATCAGCTAAGAAGCCTCGAATCAAGATTGGCGAAAGGCAAGTTTTCTACACTTACAAGTAA
Protein sequence (LotjaGi2g1v0156800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHTFEGVHYGIASQMGFIWQQARAPLIVPVLKLLVILCLAMSLMLFVEKVYMGIVILFVKVFRNKPEKHYKWEPLRDDI ELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPIIKNMVEVECQRWASKGLNIKYEIRENRN GYKAGALKAGMKHSYVKLCDYVAIFDADFQPEPNFLWRTIPFLAHNPQVGLVQARWKFVNADECLMTRMQEMSLDYHFLV EQEVGSCTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRAGLKGWKFVYLSDLKVKNELPSTFKAYRYQQHRW SCGPANLFKKVAMEIIRNKKVSMLKKFYVIYSFFFVRKIIAHVVTFVFYCVILPATVLVPEVEVPKWGSVYIPSIITLLN AVGTPRSLHLLIFWIPFENVMSMHRTKATLIGLLEAGRVNEWVVTEKLGDALKTKSGGKSAKKPRIKIGERQVFYTYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 8 | 472 | 465 | 3.9E-274 | – | |
| PANTHER | 8 | 472 | 465 | 3.9E-274 | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| Phobius | 34 | 60 | 27 | - | – | |
| Phobius | 61 | 346 | 286 | - | – | |
| Gene3D | 80 | 307 | 228 | 3.0E-67 | ||
| SUPERFAMILY | 85 | 366 | 282 | 4.13E-45 | ||
| CDD | 88 | 324 | 237 | 4.65511E-150 | – | |
| Pfam | 89 | 323 | 235 | 4.7E-21 | – | |
| Phobius | 347 | 375 | 29 | - | – | |
| TMHMM | 353 | 375 | 23 | - | – | |
| Phobius | 376 | 394 | 19 | - | – | |
| Phobius | 395 | 417 | 23 | - | – | |
| TMHMM | 395 | 417 | 23 | - | – | |
| Phobius | 418 | 478 | 61 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0156800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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