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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0158500 |
Transcript ID | LotjaGi2g1v0158500.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T8H5|I3T8H5_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0158500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55847335..55848262) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGTATTCAATTCTCTTCACATTCTTCTAATTTGTTCATGCGTTTTTGCTACCAATTTCCACCGTTTTCATTCATAT GTGAGGTTTTTCTTCTGATCTGTATCTGATTACCCAATGTGCAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTC TGGAATCATGACTGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATG ATCCCCAGAAAGACAAGCGTTTCAGTGGCTCTGTCAAGTTGCCTCATATCCCTCGACCCAAGATGAAGATTTGCATGCTT GGTGATGCTCAACACGTCGAAGAGGTATTACAACTACTATAACATGATATAGTGCTTTATAGACCATTTATTTTTGTTCT TGTGTGCCATTTGAATTACTGGTTGGTTATTAGTAATGACTTAAGTAACTTGAAATGACACAATGTTTCTGTAATTTTCT AACCGTAATTAATTCGAGGGAGCAATGTCATTCATGTAGATTTGATGATACTGGTGTTTTTATCGATTTTTGGTTTAGAT TATTTCAATTATTGGCAACTCTGTTGTGTTAATGATGTCTTTTCGCTGCTCTTCAGGCGGAGAAGATTGGATTGGACTGG ATGGATGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCATGCATTTTT AGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTCCCCCCCACCC CAGATGTTGCTCTAGGGTTTTTTAAGTTTTTGGAGTTTGAGTGTACTTGGTGATCTTTTGTTATCATCATTTCTTATTAT ATTTGGCTACTTTTGTTTTGTATTTCTTTTGTTTTACTAGCTGCTTAA
CDS sequence (LotjaGi2g1v0158500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTCTGGAATCATGACTGATTCCAAGGAGAAGAATCGCAAATT TGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATGATCCCCAGAAAGACAAGCGTTTCAGTGGCTCTGTCAAGT TGCCTCATATCCCTCGACCCAAGATGAAGATTTGCATGCTTGGTGATGCTCAACACGTCGAAGAGGCGGAGAAGATTGGA TTGGACTGGATGGATGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCA TGCATTTTTAGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGCTGCTTAA
Protein sequence (LotjaGi2g1v0158500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIG LDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 131 | 129 | 5.3E-82 | – | |
PANTHER | 3 | 131 | 129 | 5.3E-82 | – | |
SUPERFAMILY | 3 | 130 | 128 | 5.1E-35 | ||
CDD | 9 | 130 | 122 | 6.15065E-28 | ||
Gene3D | 22 | 61 | 40 | 3.2E-40 | – | |
Pfam | 22 | 130 | 109 | 2.4E-20 | ||
Gene3D | 62 | 130 | 69 | 3.2E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0158500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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