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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0160100 |
| Transcript ID | LotjaGi2g1v0160100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent clp protease, putative; TAIR: AT4G25370.1 Double Clp-N motif protein; Swiss-Prot: sp|Q93WL3|CLPT1_ARATH ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic; TrEMBL-Plants: tr|K7MIQ9|K7MIQ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0160100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56205187..56209503) extracted from Lotus japonicus Gifu genome v1.2.
ATTCACCTTAGTTCCAAAGTAGAGTTTGTGTAATTCTCTCTCAGTACTCAACAGTCTCTTTCTTTCTTTCCCTTGCTTGA AGATGAAAGCCTATTGTTGCCCACTCCCCATTCATCCAAACCCACCTCACAAAACCTCCCTCTTCACTCCAATGGCTTCC ATTCCCACCTTCTCTTCTCTCACCACAATCTCTCCCCATTCAAACCCCAACCACCACCACCACTCTTGCACACTCCCTCT CACCTCTCTCTTCGGAACCAGAATCACCCTCCACCGCCCCGCCTCCTCTCGTTCCCTTCATCTCAACACCAATTGCCGCG CAACCTCAGCAACGGTGTCGTTTAGCCTCCCCACCCCGTAAGTTTTTCTCGCCGCCACTGCGTTTGAAAACCCTCAAACG GTGATGGGTCTCTCGAATTTTCTTCTGGGTCGCCTCAAATTGCTTAAAGTTTCAACCTTTTTGTTTTTCGTGTTTTTGCA GGAAACCTCAACCGGATGCACCTGAGAAAGTTCCAAAGTGAGTTCGTTGTTCTTGTTGTTTATGTGTATGGGTTAATTGG GTTGTGTATGAGTGTGTTTGATGGTTGTTTGTTTGGTTTAGGTGGTCGGCGAGGTCGATAAAGTCGTTTGCAATGGGGGA ATTGGAAGCGAGGAAGCTCAAGTATCCTACCACAGGAACTGAGGCACTTCTCATGGGGATTTTAGTTGAAGGTTTGTTGC AATTGGTGTCTTTTCAGTTTCAGTGGTAGCAAAATGCATTGTTTTTGGCCATGAAACAAGCGCTTCTAGCTCCTGTCATT TGTTTTTGTGTGTGTGTGTGTCAGTTTATTTAAGGAAATTGTTCTTCTAATTACAGAACAAGTTTAATTTTTTCTATAAT AATAATTAGATAAGATTTTCCATAAAGATTGGCGTATACCTAATGATGTAGACCACCAGAGAGAGATTGGAAGAGAGGAG AGATAAGTGATAGATGTGATATGTGATGTGATGTTACCAGAAGAGAGAGATACAGAGAAAAATAGGGATGTCCCAAGGTG TATACACTGTTTGGTGGTACGTTTGGTGGTACACTTATCTGTAAGGTTTTTTAGGAAAAGAGAAAGAAAACAACATAGAA AAACTTCGATCAATCAAGTGTGTGAATCAACTAACATGTGTTGTTCTACCTTAAGCACAAGTCTCTGGCTTGAGTCCCTG TGTATACAGCTGCAATAAGTACTTGGTAGGGAGAGCTTTACTGCCAATAATGATCCTTCTCCTATCCATCTCAAAAGGAT GGCCCCAGTGGAGGTTACATCTGGTTCATACAAAACAAAAACATAGAAAAAGCTTTTTATTGCTTCTATCCTTTGAAAAA ACGCACGTGTATATACTATAGTATCATGTAAGCCTAATTCGGTGGCATGTTCGCTTCTTTTTAAGTTTCAGTAATAGCTT GCTTAATGCCAATTTGCCTGAAGTTAAGCTTGTCAGGCACTGGACTTATTTGATTGCTATCAATTGATTATTGAAATGCA TATTGATGGGTTCAATTAGCTTCATTTATTATGAGTTCATTTTCAATTTAAATGTGTGCATGTATGGCTTGCATGTAAGA AAGGGCGTAAAAGGTTAATTCTGTAATGTTTTCTAGCACCTGCTTGGTTTTCCTTGCAAAATTTACTTCCAAATTTCTAT ATTAAGATCGACATTGTGCAGTTATGCTCTAAATTATGGGTGGTCAACTTTGTACTTCAAACCTTCCATATGGATCAAGA TGTTCTCGAGTTTGGACGAAATTGAATCTGGTCAGTTGTGTTTATTTTATTAGATTCAGCACTTGTACATGAAGTGGTAA ATCTGGATATAGATTGGAAAGTGGCAACACTTCTGTATCAAAGAGCTGGTTCCAGTGCTTGGTTTAATGGTGTTTGAAAA GAGAGAAACCTGACAATCTTCGAATGAATGGAAAAGCAATAGTTAAGGTTCCTTGTTGTTAGTGGCAAGTATTCTCCTAT TTTGATTGGATATGCTATAACTGTTTCATAATCACATCACAGCAGATACTAATTGGTTATTCTTTCCAACTAAGATTTTA AACAGCACCCTTAAAATTTTGATGGGTGTAACTTTGAGCAGAAATGTTTAATTGTAATTGATCCTATAGTTAGAGAATTT GTGGTTGCCATAACTTGTACTCTTCCAATTACCATTGGGATTCATGTGTCCTGTTTTATTGATAGAGAGTTGTAGACACT GGTTAATCATCTTTATAAATTGATGACTGCTGTCTCGAGGGTTGAAAATTTCCTGGGGATACATATCCAATTAGGCTATC ATGTGGTATAGAAAGAGTAATATTCTGGACACACTGAAAAGACATGCATTTTGGACAAAATTTGAGAAGTATCCCATTAT TCTCAAATGGTAGATAGGTGGATCAGAGAAAGAGGGAAAAAAGGAAAATGTTACCTTTTGTTTCATCCCTTCAAATGAGT TATGGGTCAATAATATATCATGAGCTAGGCATCCTCAAGTTTAATGTCATTCAAGATGGTCATTTACTTGTAGCTTTTCT TTCTACTTTTGAGGAATTATATGTGCTGTTTTGAAAGGGTGCTGTACATGACCATGATTGGTTCCTTTTTTACTGTGAAT TTTAGACGCTGTAAGCTAAACTAAATGTGTCATTCTATTCTTTTTATTCGTTTCTTCTAGTTACCATAAAGTCCTTCTTA AATCTTGTTGACAAGATCCTGCCATTTATATTTCAGAATAAAGTCTTATTAAGAATTTTAATGAGTTTATTCCCTAGGAT TCTGGTTGGGGTACCTTTTATATAGCACTTAGTCTTTTTTTGTCCTTGCAGGAACAAGTAAAGCTGCAAAATTCTTAAGA GCCAATGGAATTACTCTTTTCAAAGTACGTGATGAAACGGTAGAGCTACTTGGGAAATCTGACATGTATTTCTTCAGTCC AGAACATCCTCCTTTGACTGAACCCGCTCGGAAAGCCCTTGATTGGGCAATTGATGAGAAATTAAAGTCAGGTATGTATA GTTTCCATGATGACATGTCTATGCCTTTTTGTGATCCGCTAGATTCACCATTCAGTTTGTAATATCCCATTTTCAAAGGT TGTGCCAGTTAATTTACTTGATGCATGAAATGAGATCTCTTGGTAAGCTTGCAAGGTCAAATATAAAAGTGAAGGTTCCT GTTGTCTTGTTTTGTGCCTCTTCTGTTAGAAAGGGGCTGAAGTATGAAAAGTTATTTCATGACGAAAGTATCAAGGGTTA ATTAAGGGTTAAAATTGGTAATGTGAAAGTATCATGATATGCATCCTGCATTATTTGTTCTATAACTTCTAAGCTCCTGG CTTGTCCACTGTATACTCGAGTACTAAGCTACGCGTATCAATGCTGATGTATTTGCTTTCTGACCTCGTGATGTTGCAGT CTTACAATGTTCATCTTTAACTTGCTTCCTAATAATACTTTTATTTTTTTAATGTTTTTTCTTGTGCATTTACCAAAATT ATGATGTCAAATGTAGGTGGAGAAGGGGAAATAAACGTGGCTCATTTACTTCTAGGAATTTGGTCACAAAAAGAATCAGC AGGTCAACAGATCTTGGCCGGTCTAGGTTTCAATGATGAAAAAGCCAAAGAACTTGCAAAATCAGTAAGTCTCAAGTTCT TCTACTGTATTTGCTGATGAATGCTCAATGTGAATTGAAATATGGTTTTCATTTCTTGCAGGTTGATGGAGATATTGACT TGAGTTACAGGAGAACAGCATAGAAGATATTTTTCGACAAAGGTTGATTGATAGCTATTGACCCTTGGTGTTGCAAGTTC CTCTAGGGGAAATTAACAATGCTCTTAGTTCCAAAAAAAAAATGCTCTTCCCTAATTTTATCAACAAGTGCCGCCTGCAA GCATTGATGTCCTTCAGACTTCTATGTCAAATATGTTGTACACTAATTTCCAATTGGGGATGATGCGTTCTTATTCTTTT TATACAAGTTTTGTTCAAGTCAAATCTTTTAACAGGGTGTGATGGTGGAATTACAGTCTCAAGTTGCTTAATCTTCCCCT TGTAATGTTATTCCCCTTCTAGAATTTGAGATTTATCTGTACCACTTTTCCTTACATCTGAGCCTTTTCATCATAAAATT AAATGTAATGAACCCTTAAAAGATCTTAAGATGCAAGAAAGAATTGATTTGTTCATGTGTATTTGCATATTTGAATTGTA CTATGAGGTTGGTTGAAAGGTCTTTTCAACTCGACCTATGGATCCGGGAAGGTACAACATACATGCGCTAACTAATG
CDS sequence (LotjaGi2g1v0160100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGCCTATTGTTGCCCACTCCCCATTCATCCAAACCCACCTCACAAAACCTCCCTCTTCACTCCAATGGCTTCCAT TCCCACCTTCTCTTCTCTCACCACAATCTCTCCCCATTCAAACCCCAACCACCACCACCACTCTTGCACACTCCCTCTCA CCTCTCTCTTCGGAACCAGAATCACCCTCCACCGCCCCGCCTCCTCTCGTTCCCTTCATCTCAACACCAATTGCCGCGCA ACCTCAGCAACGGTGTCGTTTAGCCTCCCCACCCCGAAACCTCAACCGGATGCACCTGAGAAAGTTCCAAAGTGGTCGGC GAGGTCGATAAAGTCGTTTGCAATGGGGGAATTGGAAGCGAGGAAGCTCAAGTATCCTACCACAGGAACTGAGGCACTTC TCATGGGGATTTTAGTTGAAGGAACAAGTAAAGCTGCAAAATTCTTAAGAGCCAATGGAATTACTCTTTTCAAAGTACGT GATGAAACGGTAGAGCTACTTGGGAAATCTGACATGTATTTCTTCAGTCCAGAACATCCTCCTTTGACTGAACCCGCTCG GAAAGCCCTTGATTGGGCAATTGATGAGAAATTAAAGTCAGGTGGAGAAGGGGAAATAAACGTGGCTCATTTACTTCTAG GAATTTGGTCACAAAAAGAATCAGCAGGTCAACAGATCTTGGCCGGTCTAGGTTTCAATGATGAAAAAGCCAAAGAACTT GCAAAATCAGTTGATGGAGATATTGACTTGAGTTACAGGAGAACAGCATAG
Protein sequence (LotjaGi2g1v0160100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAYCCPLPIHPNPPHKTSLFTPMASIPTFSSLTTISPHSNPNHHHHSCTLPLTSLFGTRITLHRPASSRSLHLNTNCRA TSATVSFSLPTPKPQPDAPEKVPKWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVR DETVELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAGLGFNDEKAKEL AKSVDGDIDLSYRRTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 253 | 226 | 9.0E-108 | – | |
| PANTHER | 28 | 253 | 226 | 9.0E-108 | – | |
| ProSiteProfiles | 99 | 247 | 149 | 29.115 | – | |
| Gene3D | 104 | 251 | 148 | 2.5E-37 | ||
| SUPERFAMILY | 104 | 246 | 143 | 2.49E-11 | ||
| Pfam | 119 | 168 | 50 | 3.0E-8 | ||
| Pfam | 204 | 243 | 40 | 2.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi2g1v0160100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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