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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0161900 |
Transcript ID | LotjaGi2g1v0161900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Hypersensitive-induced response protein; TAIR: AT5G51570.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4; TrEMBL-Plants: tr|I3S4Z1|I3S4Z1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0161900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56741300..56742262) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGAATATGGATATAGCATTGAGCACATACTGATGGTTGATATTATACCTGATCCTTCTGTGCGTAAGGCAATGAA TGAAATTAATGCAGGTATGGGACTTTATGGTTATTACTTATTAGGATGCGTTTGTGTTCCTCCTATGTTCATATCAAGCA GTTCTCTGTGTACTTATTAGGATGTGTATATGTATGTATACCTGATCCCCCCTGTGGCCCTGTGTTTGTATTTTTGCTTC TGTGTACTTATTAGGATGTGTATATGTATGTATACATTGGATTGGGTCTGAAAAGATAGTTCTCTGTTTTGCTGCTTTAC GAATTTTTAGATATCTTGTCAATTGGTGATATCTCAATTGTAGTTTTGGGTCCTGTGAGCATCTTGATGAAATTGTTCTT AAATCACCCCCTCCCCATTTTCCTTTCTCTGTCCCAAACTCTGATTTTATTTCAAAGAAGCAGATCGTGCTTGAGCTGTG TGTCTGTGACTGTGTGTTTATCCCTACATGTCCCTGTATGCTACCTGTGTGTATTGCAATCTAGATGTCCCTTTATGGTG ACTAATAGTAATCACTGAGGATTATTTTATTACAGCTCAAAGGATGCTACTTGCTAGTGAATTCAAAGGAGATGCTGAAA AGGTGCTTCTAGTGAAGAAGGCAGAAGCTGAAGCTGAAGCCAAGTATTTGGGCGGGGTTGGTGTGGCCAGGCAGCGACAA GCTATCACAGATGGCCTGAGAGAGAACATCTTGAATTTTTCTGGCAAGGTAGAAGGCACTTCTGCTAAGGAAGTGATGGA TCTTATCATGGTTACTCAGTACTTTGACACAATCAAAGACCTTGGGAACTCATCAAAGAATACCACAATTTTCATCCCCC ATGGACCTGGCCACGTTAGGGATATTGGTGACCAGATACGCAATGGAGTGATGGAAGCAGCCAGTGCTCAAGTTATCGAG TGA
CDS sequence (LotjaGi2g1v0161900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAATATGGATATAGCATTGAGCACATACTGATGGTTGATATTATACCTGATCCTTCTGTGCGTAAGGCAATGAA TGAAATTAATGCAGCTCAAAGGATGCTACTTGCTAGTGAATTCAAAGGAGATGCTGAAAAGGTGCTTCTAGTGAAGAAGG CAGAAGCTGAAGCTGAAGCCAAGTATTTGGGCGGGGTTGGTGTGGCCAGGCAGCGACAAGCTATCACAGATGGCCTGAGA GAGAACATCTTGAATTTTTCTGGCAAGGTAGAAGGCACTTCTGCTAAGGAAGTGATGGATCTTATCATGGTTACTCAGTA CTTTGACACAATCAAAGACCTTGGGAACTCATCAAAGAATACCACAATTTTCATCCCCCATGGACCTGGCCACGTTAGGG ATATTGGTGACCAGATACGCAATGGAGTGATGGAAGCAGCCAGTGCTCAAGTTATCGAGTGA
Protein sequence (LotjaGi2g1v0161900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEYGYSIEHILMVDIIPDPSVRKAMNEINAAQRMLLASEFKGDAEKVLLVKKAEAEAEAKYLGGVGVARQRQAITDGLR ENILNFSGKVEGTSAKEVMDLIMVTQYFDTIKDLGNSSKNTTIFIPHGPGHVRDIGDQIRNGVMEAASAQVIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 150 | 150 | 5.0E-74 | – | |
PANTHER | 1 | 150 | 150 | 5.0E-74 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0161900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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