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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0165100 |
| Transcript ID | LotjaGi2g1v0165100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptide chain release factor 1; TAIR: AT1G33330.1 Class I peptide chain release factor; Swiss-Prot: sp|A1U367|RF1_MARHV Peptide chain release factor 1; TrEMBL-Plants: tr|K7MIR9|K7MIR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0165100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57486888..57493027) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTCAAACCCTAAAGTTATCATACTTCTTCAATCTCACCTCCAATCCTTATCTTCACATAGCCTCCACTCTGACATAT GCTCACTTCCTCTCTCTCTCTCTCTCTCACCATCCCCTCAACACATCCACAACGTAGTTTCAATTCCAGTTCCATTCCTT ATACTTCAACCTCCATGAGATAAATCAGATAAAAGCTTCAGTATACTTCCAATTCCATAAGTTTCTATTCTTTCAATTTC AATTCAGTTTTTTTCTTTCAAAAACTTCAGTTTTCCAATTTTTTTCTGAATCCAAAAAGTTGGGCATGGGCCCAGCCCAA AAAAACGAGAAAAATAAAAAACCGCCCAAAACCGCTAACCGGCCGGTTTTCAACGGTTCGGCCGGTTCAACACCGGTTTG GGCGGTTCAACAACGGTTTTTCATACAGACGGTTTTGCGAGTGTTTTGGACCGGCCAGGGGTCCGGTTCCCGGTTCAACC GGTCGAACCGGACGGTCCGGTCCGGTTTTTATTACCATGGTTCTAACAATACAGAAGAGCTTAGCAGCGTTGAGAAGCGT GGAGAAGTTGAAGCCAGACGAAGAGGCAACAAACAATGATGGCACACAAAATCCTCTGCAAACCAAGCTTCTTCATCACT CTCAGACTCAGCGGAATCACCAGCTATGGTTCTTCACACCACATTCACCATCCATTTTTCAACTCACCACCCTCTTCCTC TCTCAACAACACTCGCCCTCCACCCACACTTCATTCCACAACCAGAACCAAAACCACCACCACCACCACCGTCACCGCCG CCGCCATGGATGGTTCAGCAAGAGGATACCTGGAACTAACCGACGACGAGCTGATGCGGCAGTGCGAGATGGGCACCTTC AAGTCCTCCGGTCCCGGCGGCCAGCACCGCAACAAACGAGAATCCTCGGTTCGCATTAAGCACTTACCCACCGGCGTCAT TGCTCAGGTTTTCACCTAATCCTACTACTTTGATAATCAAAATTTCATCTTGTTTGATTATTTCATTGTGTGGTGTTATC GTGTTCTCTGTTGGATAGGCTTCTGAGGATCGTTCCCAGCATAAGAACCGTGCTTCTGCGCTGAGCCGCCTTCGCTCTCT CATAGCTCTCAAAGGTGTGTATCTTTGAATGCTTGAGTTTTCTCATTTGATTTGTTCCTTTTTTTTCTCATGGCACCTTG CAATTTACAAAATGAGTTTACTGAATGGGAACCAAATGCTTTTTTTGGTTTCTTTGCTTGTTCAACTAATTAAAACACAA CTAAGAGGGAGAATATTACGATTAAAAAGAGTTTTTTTAGTGGTGCATCATTTTTCTAGGGGAGTCAGATAGAGTCTTGT TAGCGAATAGGTTCGAGCCCTGCAATTCTCTTTATGGGATAAGGTTCTTGTTGAGAATTCAAGGTTGAGTTGGCACATTG GTCAAGTATGGGTGAGGACAAGACTTTATAATGGATGTGACCCATAAACCTAATGCCTTTGCGGTCGCGATAACGGTCGC GTCACAGTTGCATTGTGGTCATTTGTATTGGGGAAAATTGTGAGTAAATGTGGTTGTCGCGGCGTCGCAACTGAAATCAC GGTTGCAGACCTTGATTTAAAACCGTGCTATTGACCTTATTTCATAATGAATTTAAGACACTGATGTCTAATTTCACTAT CTTATTTGTTTAGACTATTTTAATCACCAAATATAAGTTTCTATTGAAGGAACAAGAAAAGAAAACAAGCAAAGTGGACA CAGAATTTCAATGCTTATTGATTCACCAATTTTTGCATAAAACTGGTGCATTGGTGTTGGTTGCACTAGTTAATTTTTTG TTACTTATATTGTAATTAGTGTCATGTCAATATTTTATTGGCATTTTGGTGCGCAGGTTTGTGCAAGGATTTGTCATAGT CTGAAATATATATGTTTTAACTGATATTAAGAACTTAAATTAGTGAACGGGTACTTCCCTTTTTGTGGCCCTGTATCTTG TACTAAATTTCATACTGGAATCAATGTTCTAAAAACTGAACTGGTGATTGATTTGGCTATATCTCTAAGTCATAGTTTGA TTGGTTTATCTAGCTGATTGGTGGTCGAACCACGGTTGAAACTTGAAAGGGATAGTGTAATTTATCGATAATTAGACTGG AGATATAAATGGTACACCCTTCATGGTCTGACTAGCAATTGGCTGGTCTAGTATGAGGTTCCGAACATTGACTATAATGT GTTTAGGAAAGGAGGGTCTCCCCCTGTATCTGTTCAGAAAATACTTGCACTGAGACAAATATCCCCTTTACTTGTAGTAA GCTGATAGGGACCTACATAGGGTTAAGAAAATATGGAAAGTTTATACTTGAAGAAACAAAAGACAGTGAGTAGTTAGCAG TTTGAATGGTTATCATAGTTGTTTAGGGTAGAGGTTAAATACCCGAATGGGGAGAGGAATAGGGTATTCGGTTATCAATA AGCATTATACCAAGCTATTGCTTAAGTGAAAAAGGGGAGACCCTCGAAGGAGTTATCTCCTTGTTTCATACCCAGAAATA ATAACAGTCTCTTTTTCTTACTCTTCCTCTCTCTGTAAATCTACTTTTCTTTACTCAGATTTCCTGAGTTCTATCATAAG CAGTATTTTGGCTGATAGATAGCTTGTTATTTTATTGAGCTAGTCAGGAAAACGGTGGATCTTGATGCTTACTCACCACC TCGAGAGCTTCTTCAGATACTTCCTCCCAAGTCATCCATTAGAGGGTCGGATATTGGTTCACAAATTGGACCTAATAACT CAAAATTTGCAATGGTTCGTACATGTCTCTCTGTCCCTTGCTTTTTATATTTTCTTCTTTATCCTGTCATAATAATTTAT TATTGAAGCCTAATTACAACTGCACTGTATATACTTATGGTCCTTCCAACAGGGAATGCAAGCTCTTTTGGATCTCATTT TTGCAGTTGAGGGATCAATCTCGGAAGCTGCAAAATATCTTGGGTATTTGATATATGCTTTAAGTACAAACTTTTTTTTG GGTGTTATTAATATGTTAAGCCTCACCAGTTACTATGACTTTCAAGATCTGTAACTTAGTATTAAAGGGCCACTTATGGA TGAAAAATATCTTTGATCATCTAAATAATAGTTGTTTTTACTTGCCAATGAATGTATGCCAAAAAAATTGATATAACTTT GATTATTGATATGAAAGTTGATAGCAAACAGTGGCAATTTCACTCTTCTCATATTAACATGAAGCTGTTTCCCCCTTTAT GCTATACTAAGTGATATACTTTTACGTATATAAATTATTGTTTTAATTGCTGGTTTACCTATCGGATTTGTTGGAACAGT TCTGTAGTTATTTTTGTGTTTATTAATCATATTGCAGGTTATCTACTGGGGCACTGTCTCGGTTAATCCTATCTGATGAT TCACTTAGAATGGAAGTAAATAGTCTGCGGGCATCAAAGGTATACCCTCTGATGGAGTCTCTGAAAAATCAGTTAAATTA ATTAATAACATAAAATGAAATGTAATTTAGTTTTCCCTGTTGATACATATCAAAGCTAATATAAGCATTCTAAAATAGTT TTCTAATATCTTGAAATGTTTAAATCATGACAAGTATAATATTCTTCCTATATATTAGGAAAAAAGAGTTTGAGGAAACC GGATTGTTTACTCCATAAATAAACAATACATTATATGGTAGTTGTCATGAACTGGTTATCTCAAAAGCTTTAGCAGTTGG GCGAACACACTTGAATGATTTTACATTATTTTCTATGCCCATTGGGCTTGAAGCGTGGACAATATAGAGAGACTCACCTA CCATGTGCGGAAATTCAACTTTTTTTTATTGAATGATGGGGGCAACAAGGACCGAACTCTAGACCACTTAGTCATAGAGG CTATGATACCATGTCATGAACCAATTATCCCAAAAGCTTAAACCATTGGGTGAAGGCACATGAATGGTTTTATATTATTT TCTAACAGTAGTTATTTGATATATGCATGGTATTACAACTTTCATATTTGATATATGCTAGTTATTACATGTTGGAACCT TGCACCACATGGAATGCTGTGCTGGGAAAAGTTCTTGCATTTAGACATGCAAGGCATCTTCTTTTGTTTAATGTCCAAAA GGAACAAAAGTTCTTGCGCTATGTATGCTTCCTTATTCTATAATGTTATTTGCTTGGTCATTAAGCCACATTTGCATTAG ATAAGAATCTTCTGTTATGGTAAAAAAAGAGAAAAAAGAGTCCCTCTATTAGTGACTCCTTTTTATATTGTTATATTTTT TGTTCTTGGCTTCATGAGAAAGATCTACATGTATTTTTGGTGAAACCATTAGTAACTGGTAATCTGTTTTTTGGAGCATG AATAGGGTATGAAGCCACTCAAGTAGAAACTCTCGAATTTTCATTCCTCAAGCAGGTAACATTTATTCTATCTCCTGCTA CACACATAAATTTAAGTCAGCCTTTTGGTTATAGTTATGAACTAAGAAGTGAAGAGAAAACCTTTAATATGCATAGATAT TGGTCAAATAATGGAAAATAATTCGCTATTCATTGTTCCTTGAAAACACTGAAAAAAGGGATACTTTCTTGACTGGAGCC TAGTCTGAAATTTTATTACAGGTGAGTGTGAGTTTCCTTAAACTCTTCAGTTATTCTATTAAGATGCCTTTGGTTTGCTT AAAATTTTAGGACTAGACGGCATACAAATTTTAGCTTCATATTTGATTTTTATAATGGTCATTTCCAAAACAAAACTTAG GGCACAGGAGAAGGCAAAACTTTTAAAATTTTCGTACTCACTAAACCAAGGGACAACTTCTTTTTCCAAGTAACATTACT CAAAGATAAAATTACTCATTTTTTCTCTTCAATAATCACACTCTCCGTGTGTCTGTGTGTGTTGCATATTTAATTCAGAA CATTATAATATTATACATTATAGAATTACATCACATTATATTATATGTATAATATTGCAATTTTTATAATTATATATTAT ATTATATAAAGTTATAAAAATTTGATGATTTATGTATCATTCTTTTTTTGTTGTGTATCTTCTCTTCAATGCAAAATAAA CATTACATACTGTAGAGGGATAAATACGTTTTTGGTCCCTGTAAATTTAGTGAAATTTAGTTTTCGTCCTTGTGAAGAGG CTTTCAGATGCATTATTATGTAGTTTTTTTTCCCCTGTTCACACTGTTTTTGCATGGCAATGGTACCACACATCAGTGAA ATTCAACACATGACTTACTACAAGAATTTATAGAAAGCAAACAACTTTAGCCATTTGCCTTAGATCTAAAATGGTGCAAA CTAATTATGACTAACATGCAACTATCATGTTTGGTTGGAGTTATCTATGATATGATATTTTTTTCTTGGTGTATTTTTCT ATTCAGGGTTCTTAGCGGTATGGGGTTCATTTATTTGCAGAAGAAAGTTATTTGAACATGGTGTTCTCCCCATGGAAGAA TTGAGGTTGGAAATGAAAAATACAGAAGATAATGAGGGTGCAGGGTGTTGATTTTTCAGCTTGTGGAGAAGAACCCAATC TGCATAACTCATTGAGTAACGTTGAATGAAGATGGTTCTTTTATGGTAAGGAAACATCAAGATGGGAACCTAAGATAGAA GATGCAGTTCACTGTAGATTTTTTAAGGAAAAATAGCTGGACATCAAACTGGCCATCTGGAATACAAGATGCAGATAGTT GTAGTTTTAATAAAAAGGATTACATTTATCAATATTTTGATTTTTTTTGGCAGGGTATCCTCTGCTACTTTTCATTCTTT ATTTGTTTCTACAGCAAGATTTTTACTGATCAAATTGTTCTTGTAATTCAATATTCTAATGTATTTCTTCTCCACTCACA AGATGAATATACATCACCAATTTATTGGATAAGAAACAGACCTTCCATCATATTCCCTTGGATTGATCTCTTTCAGTTTT ACAATTGTGTAATGTTCACTGATTTTATACATGTGCAAATCATAATGTTTTGGTTTAAGATGCTTTTTGTTTGGTTGGAC TGTTGGAGTTCTTGAGAATAGATGTGTAGCTGTTACAAAGATGGATTGAGAGTTAATGGA
CDS sequence (LotjaGi2g1v0165100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCACACAAAATCCTCTGCAAACCAAGCTTCTTCATCACTCTCAGACTCAGCGGAATCACCAGCTATGGTTCTTC ACACCACATTCACCATCCATTTTTCAACTCACCACCCTCTTCCTCTCTCAACAACACTCGCCCTCCACCCACACTTCATT CCACAACCAGAACCAAAACCACCACCACCACCACCGTCACCGCCGCCGCCATGGATGGTTCAGCAAGAGGATACCTGGAA CTAACCGACGACGAGCTGATGCGGCAGTGCGAGATGGGCACCTTCAAGTCCTCCGGTCCCGGCGGCCAGCACCGCAACAA ACGAGAATCCTCGGTTCGCATTAAGCACTTACCCACCGGCGTCATTGCTCAGGCTTCTGAGGATCGTTCCCAGCATAAGA ACCGTGCTTCTGCGCTGAGCCGCCTTCGCTCTCTCATAGCTCTCAAAGTCAGGAAAACGGTGGATCTTGATGCTTACTCA CCACCTCGAGAGCTTCTTCAGATACTTCCTCCCAAGTCATCCATTAGAGGGTCGGATATTGGTTCACAAATTGGACCTAA TAACTCAAAATTTGCAATGGGAATGCAAGCTCTTTTGGATCTCATTTTTGCAGTTGAGGGATCAATCTCGGAAGCTGCAA AATATCTTGGGTTATCTACTGGGGCACTGTCTCGGTTAATCCTATCTGATGATTCACTTAGAATGGAAGTAAATAGTCTG CGGGCATCAAAGGGTATGAAGCCACTCAAGTAG
Protein sequence (LotjaGi2g1v0165100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMAHKILCKPSFFITLRLSGITSYGSSHHIHHPFFNSPPSSSLNNTRPPPTLHSTTRTKTTTTTTVTAAAMDGSARGYLE LTDDELMRQCEMGTFKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKNRASALSRLRSLIALKVRKTVDLDAYS PPRELLQILPPKSSIRGSDIGSQIGPNNSKFAMGMQALLDLIFAVEGSISEAAKYLGLSTGALSRLILSDDSLRMEVNSL RASKGMKPLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| MobiDBLite | 35 | 61 | 27 | - | – | |
| Gene3D | 45 | 153 | 109 | 1.6E-23 | – | |
| SUPERFAMILY | 50 | 152 | 103 | 2.75E-23 | – | |
| PANTHER | 52 | 250 | 199 | 5.5E-114 | – | |
| PANTHER | 52 | 250 | 199 | 5.5E-114 | – | |
| Pfam | 89 | 147 | 59 | 3.3E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation release factor activity | Involved in catalyzing the release of a nascent polypeptide chain from a ribosome. | ||
| Biological process | Translational termination | The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code). |
Expression pattern of LotjaGi2g1v0165100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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