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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF00472
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.022s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0181519.1
n.a. PREDICTED: peptide chain release factor 2-like, partial [Cucumis sativus] gi|449485390|ref|XP_004157153.1| chr0 88597429 88600207 +
2 domain predictions
2 GO terms
Lj0g3v0335289.1
n.a. PREDICTED: peptide chain release factor 2-like, partial [Cucumis sativus] gi|449485390|ref|XP_004157153.1| chr0 175581803 175583331 -
2 domain predictions
2 GO terms
Lj1g3v2840270.2
n.a. PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356531868|ref|XP_003534498.1| chr1 32344983 32350565 -
2 domain predictions
2 GO terms
Lj1g3v4789600.1
n.a. PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356571075|ref|XP_003553706.1| chr1 57651506 57654655 +
2 domain predictions
2 GO terms
Lj1g3v4830340.1
n.a. PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356503962|ref|XP_003520768.1| chr1 58365179 58369661 -
2 domain predictions
2 GO terms
Lj1g3v4916370.1
n.a. PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356505530|ref|XP_003521543.1| chr1 59576360 59582206 -
2 domain predictions
2 GO terms
Lj1g3v4916370.2
n.a. PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356505530|ref|XP_003521543.1| chr1 59576360 59582206 -
2 domain predictions
2 GO terms
Lj2g3v0521160.1
n.a. PREDICTED: peptide chain release factor 2-like [Cicer arietinum] gi|502162777|ref|XP_004512613.1| chr2 6914351 6920435 -
2 domain predictions
2 GO terms
Lj2g3v1732360.1
n.a. PREDICTED: peptide chain release factor 2-like, partial [Cucumis sativus] gi|449485390|ref|XP_004157153.1| chr2 26722849 26723448 +
2 domain predictions
2 GO terms
Lj4g3v1313800.2
n.a. PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Glycine max] gi|356514148|ref|XP_003525768.1| chr4 19183320 19186506 +
2 domain predictions
2 GO terms
LotjaGi1g1v0487600.1
n.a. Peptide chain release factor, putative; TAIR: AT5G36170.1 high chlorophyll fluorescent 109; Swiss-Prot: sp|Q9LVY0|PRFB1_ARATH Peptide chain release factor PrfB1, chloroplastic; TrEMBL-Plants: tr|G7KSD8|G7KSD8_MEDTR Peptide chain release factor 2; Found in the gene: LotjaGi1g1v0487600 LjG1.1_chr1 100046872 100052903 -
2 domain predictions
2 GO terms
LotjaGi1g1v0487600.2
n.a. Peptide chain release factor, putative; TAIR: AT5G36170.1 high chlorophyll fluorescent 109; Swiss-Prot: sp|Q9LVY0|PRFB1_ARATH Peptide chain release factor PrfB1, chloroplastic; TrEMBL-Plants: tr|I1L681|I1L681_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0487600 LjG1.1_chr1 100046872 100052903 -
2 domain predictions
2 GO terms
LotjaGi1g1v0748100.1
n.a. Peptide chain release factor 1; TAIR: AT1G56350.1 Peptide chain release factor 2; Swiss-Prot: sp|F4I532|PRFB2_ARATH Peptide chain release factor PrfB2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SEV9|A0A0B2SEV9_GLYSO Peptide chain release factor 2; Found in the gene: LotjaGi1g1v0748100 LjG1.1_chr1 132063542 132067181 +
2 domain predictions
2 GO terms
LotjaGi1g1v0748100.2
n.a. Peptide chain release factor, putative; TAIR: AT1G56350.1 Peptide chain release factor 2; Swiss-Prot: sp|F4I532|PRFB2_ARATH Peptide chain release factor PrfB2, chloroplastic; TrEMBL-Plants: tr|V7D0Y9|V7D0Y9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0748100 LjG1.1_chr1 132063542 132067181 +
2 domain predictions
2 GO terms
LotjaGi1g1v0748100.3
n.a. Peptide chain release factor 1; TAIR: AT1G56350.1 Peptide chain release factor 2; Swiss-Prot: sp|F4I532|PRFB2_ARATH Peptide chain release factor PrfB2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SEV9|A0A0B2SEV9_GLYSO Peptide chain release factor 2; Found in the gene: LotjaGi1g1v0748100 LjG1.1_chr1 132063625 132066895 +
2 domain predictions
2 GO terms
LotjaGi1g1v0754900.1
n.a. Peptide chain release factor 1; TAIR: AT2G47020.1 Peptide chain release factor 1; Swiss-Prot: sp|A5V9C3|RF1_SPHWW Peptide chain release factor 1; TrEMBL-Plants: tr|K7KGG4|K7KGG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754900 LjG1.1_chr1 132798133 132805851 -
2 domain predictions
2 GO terms
LotjaGi1g1v0768000.1
n.a. Peptide chain release factor 1; TAIR: AT3G62910.1 Peptide chain release factor 1; Swiss-Prot: sp|Q8RX79|APG3_ARATH Peptide chain release factor APG3, chloroplastic; TrEMBL-Plants: tr|I1JQI6|I1JQI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0768000 LjG1.1_chr1 134069864 134076200 -
2 domain predictions
2 GO terms
LotjaGi1g1v0768000.2
n.a. Peptide chain release factor 1; TAIR: AT3G62910.1 Peptide chain release factor 1; Swiss-Prot: sp|Q8RX79|APG3_ARATH Peptide chain release factor APG3, chloroplastic; TrEMBL-Plants: tr|A0A151TWB3|A0A151TWB3_CAJCA Peptide chain release factor 1; Found in the gene: LotjaGi1g1v0768000 LjG1.1_chr1 134069988 134076159 -
2 domain predictions
2 GO terms
LotjaGi1g1v0768000.3
n.a. Peptide chain release factor 1; TAIR: AT3G62910.1 Peptide chain release factor 1; Swiss-Prot: sp|Q8RX79|APG3_ARATH Peptide chain release factor APG3, chloroplastic; TrEMBL-Plants: tr|I3S1Z3|I3S1Z3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0768000 LjG1.1_chr1 134070498 134072783 -
2 domain predictions
2 GO terms
LotjaGi2g1v0165100.1
n.a. Peptide chain release factor 1; TAIR: AT1G33330.1 Class I peptide chain release factor; Swiss-Prot: sp|A1U367|RF1_MARHV Peptide chain release factor 1; TrEMBL-Plants: tr|K7MIR9|K7MIR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0165100 LjG1.1_chr2 57486888 57493027 -
2 domain predictions
2 GO terms
LotjaGi2g1v0165100.2
n.a. Peptide chain release factor 1; TAIR: AT1G33330.1 Class I peptide chain release factor; Swiss-Prot: sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2; TrEMBL-Plants: tr|V7C4Y7|V7C4Y7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0165100 LjG1.1_chr2 57489355 57492174 -
2 domain predictions
2 GO terms
LotjaGi2g1v0165100.3
n.a. Peptide chain release factor 1; TAIR: AT1G33330.1 Class I peptide chain release factor; Swiss-Prot: sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2; TrEMBL-Plants: tr|A0A0B2QWN7|A0A0B2QWN7_GLYSO Peptide chain release factor 1; Found in the gene: LotjaGi2g1v0165100 LjG1.1_chr2 57489495 57492174 -
2 domain predictions
2 GO terms
LotjaGi4g1v0213800.1
n.a. Peptide chain release factor 1; TAIR: AT1G62850.2 Class I peptide chain release factor; Swiss-Prot: sp|Q8R035|ICT1_MOUSE Peptidyl-tRNA hydrolase ICT1, mitochondrial; TrEMBL-Plants: tr|A0A1J7HB25|A0A1J7HB25_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0213800 LjG1.1_chr4 49716697 49722463 +
2 domain predictions
2 GO terms
LotjaGi5g1v0134400.1
n.a. Peptide chain release factor, putative; TAIR: AT3G57190.1 peptide chain release factor; Swiss-Prot: sp|F4J264|PRFB3_ARATH Peptide chain release factor PrfB3, chloroplastic; TrEMBL-Plants: tr|A0A151U2X3|A0A151U2X3_CAJCA Peptide chain release factor 2; Found in the gene: LotjaGi5g1v0134400 LjG1.1_chr5 31809849 31828042 +
2 domain predictions
2 GO terms
LotjaGi5g1v0134400.2
n.a. Peptide chain release factor, putative; TAIR: AT3G57190.1 peptide chain release factor; Swiss-Prot: sp|F4J264|PRFB3_ARATH Peptide chain release factor PrfB3, chloroplastic; TrEMBL-Plants: tr|A0A151U2X3|A0A151U2X3_CAJCA Peptide chain release factor 2; Found in the gene: LotjaGi5g1v0134400 LjG1.1_chr5 31809849 31828042 +
2 domain predictions
2 GO terms