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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0167400 |
| Transcript ID | LotjaGi2g1v0167400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G27050.1 homeobox leucine zipper protein; Swiss-Prot: sp|P0CJ66|Y1705_ARATH Uncharacterized protein At1g27050; TrEMBL-Plants: tr|A0A151SI18|A0A151SI18_CAJCA Homeobox-leucine zipper protein ATHB-54; Found in the gene: LotjaGi2g1v0167400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57793485..57795175) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAGTTGAAAGTACCATCAAAAGTACATTAGATTAGAGTTGGAACTAGAAAGATACGTTTCTGACTTTCTAATCCACG CACACAACCATGAGTCGCAAGCGGGACAGACCCAATGTTTCCCGCCAAGCTTCCAAGCGCCGCCGCCCCCTGCCGGAGCC CGTGGAGGAGGAGAGACCCTCGATTAGGCCGTCACCGCCGTCAGCATTGGTCGTAATGGGTCTCCCTATCGACTGCTCTG TCCTCGATCTCAAGTCCCGATTCGAGATCTACGGCGCCATCTCTCGCATCCGCATCGACCGCGACGCCGTCGGATATATC ACCTACCGGAGTAAGGACTCCGCTGACGCCGCCATCGCCGCCGGTGTTGACCCTTCCTTCGGAATCACCGTCAATTCGAA AAAGGTGCGTTTTTTTTGTCACCTAGGGTTTTCTAATTTGTTTTCAAAATTGGCGAATTTTCAGTATGTATGTTTCGAAT TTTGATTAAAGTTTGAAACTTTGAAGTTGAAGACAGTAATAGTGAAGGCTAAAATTGCACTTTATTGGCAAATTTCTGCT TAACCTAGCTTGATAAAAAATTTAGAACTTTGTAATTAAGGCATCAATTGCAGCTTAAATTTTGAAATTTAAGTTAAGAA AAGAATTTGAGGAAGGGGTTCATTGCATTTTTCACTTAGTAGCTTAGAGCTTGATGACTGTGAAGTTAAGGCAACACTAT TAAAGCTTGAAACTGAGCGTATTTGACAAAATTTCCACCTAATTTTTTAGAATTTTGGTTGAAGTTTGAATCTTAGTTAA AACAACAGACAGTATAGAGTATAGACTGAAAGTTGAATTGAAGGCCTGTTTAGTTTGTTTCATGTGGAATTGGAGAAAGG GGCTAATTGTATTTTCCACTTAATAGCTTAGAGCTTGATAACTGTGTATGTAGTTAAGGCAACACAGCCTGAAACGTAAG GAATTTGGTTGAAGTTTGAAAGTTTAAAACAAAATAGAGATTGAAAGTTGAATTGAAGACTGTTTAGTTTTTTTCATTTG GAATTGGGGGAAGGGGTTAATTGCATTGTTCTAGTACTTTCTGCGGGAAATTTGAAAGACATTGGTTTTATGGTGTGTGT AACAGGTTCAGGTTCTGTGGGCAACTGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAAGCTCC ATGTCAAAGCTTGTGCGTGCTGAGGTGCCCTTGAGAAGGCATGGAAGGGGTAATAGACTCGCATCATCTATAGGGAATAC CAAAAGTATTCAGGATAGGTTGGGTACTTCAGTTCTAGAAGCGCCTTTCAGGGGCAGGGAAATTGTTGCTTATGATGATA TTCTGTAACTTTGAAAGTAGATAATTTTATGGGGTTTTCTTATTTTGTATCATTGATCTGAATTTGAGATTTATATCTTC CTGTCTTCGTAGTTTTTTCCTTTTTCATTTTTATGTTCATGAGAGCTTCTAGGAAGTATTAGTATGGAAGCTAATCATGT GATTTAGTTTGTGGTTGTGTTGTTTAATGCCATAATATAATGTAATTGGTAGTAGCTGGTTTCACCTTGTGTTTTCCCCT TTTAAGTATTGGGTTAAAAACTATAACCGTCCCTGAACTTTGGGCGAGATTTGAAAACCGTCCCTCGCCGGAAAATTATC TGAAAACCGTC
CDS sequence (LotjaGi2g1v0167400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCGCAAGCGGGACAGACCCAATGTTTCCCGCCAAGCTTCCAAGCGCCGCCGCCCCCTGCCGGAGCCCGTGGAGGA GGAGAGACCCTCGATTAGGCCGTCACCGCCGTCAGCATTGGTCGTAATGGGTCTCCCTATCGACTGCTCTGTCCTCGATC TCAAGTCCCGATTCGAGATCTACGGCGCCATCTCTCGCATCCGCATCGACCGCGACGCCGTCGGATATATCACCTACCGG AGTAAGGACTCCGCTGACGCCGCCATCGCCGCCGGTGTTGACCCTTCCTTCGGAATCACCGTCAATTCGAAAAAGGTTCA GGTTCTGTGGGCAACTGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAAGCTCCATGTCAAAGC TTGTGCGTGCTGAGGTGCCCTTGAGAAGGCATGGAAGGGGTAATAGACTCGCATCATCTATAGGGAATACCAAAAGTATT CAGGATAGGTTGGGTACTTCAGTTCTAGAAGCGCCTTTCAGGGGCAGGGAAATTGTTGCTTATGATGATATTCTGTAA
Protein sequence (LotjaGi2g1v0167400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRKRDRPNVSRQASKRRRPLPEPVEEERPSIRPSPPSALVVMGLPIDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYR SKDSADAAIAAGVDPSFGITVNSKKVQVLWATDPLAMWREGVGNNKDKSSMSKLVRAEVPLRRHGRGNRLASSIGNTKSI QDRLGTSVLEAPFRGREIVAYDDIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| Gene3D | 1 | 115 | 115 | 3.8E-11 | ||
| MobiDBLite | 16 | 30 | 15 | - | – | |
| SUPERFAMILY | 20 | 119 | 100 | 1.63E-12 | ||
| ProSiteProfiles | 38 | 113 | 76 | 11.605 | ||
| SMART | 39 | 109 | 71 | 6.8E-6 | ||
| CDD | 40 | 108 | 69 | 2.55484E-10 | – | |
| Pfam | 40 | 90 | 51 | 1.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0167400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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