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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0167600 |
Transcript ID | LotjaGi2g1v0167600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine protein phosphatase 7 long form isogeny; TAIR: AT1G48120.1 serine/threonine-protein phosphatase 7 long form-like protein; Swiss-Prot: sp|Q9LNG5|PPP7L_ARATH Serine/threonine-protein phosphatase 7 long form homolog; TrEMBL-Plants: tr|A0A1B5Z9A6|A0A1B5Z9A6_TRISU Uncharacterized protein; Found in the gene: LotjaGi2g1v0167600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57818485..57820290) extracted from Lotus japonicus Gifu genome v1.2.
AAACTAAGAGGGTATCGTCTGAAGAGTTGGCCGATCGTCGTGCCTATCTCCACACTTCTCATAGGCGAGGTGATCATGAT ACAGATGTGTCGACTTCTCGGAAGCGGGCTAGGAAGGGTGCTAGGAAGGGGGCTCCGAAGGCGACCACTGAGGTTACTGC CCCTGCTACTGAGGTTCCTACTACTCAGGTTCCTGATACTGAGGTTCCTGCCCCTGCTACTGAGGTTCCTGCTACTGAGG TTCCTGCTCTCTCGACGCCTGAGGTTACTGCTACTGAGGTTTCTCCTCAGTCGACGCCTGAGGTTACCGCCCACGATACT GTTGAGCCTTCCACCTCTTCACTTGATATTGATGCAGTTGAGGAGCCGGAGTCGGAGTCGGGGTCGGAGTCGGGGTCTGA GTCTGAGATTGAGGGTGAGGATGTAGAGGTAGAGGATCCGAATATGCCGCCGCTCCAGAGAGATCCATCGTTTCCTGGTG GGCCGGTTGAGTTGTCACTTCTGCAGCATTACCCGGATCACATAGCGCCGTGGACGTGGCATACCCTACTAGGCACCACT GACCCTCGTTATTCTGAGCGAGGTGATTTGAGGCTTGCCACTGCTGGTACGAAGCTCGGGCTGATGACGTGTGAGGGGGA CAATTACAGGGAGGTCCGCTTGATTGTGGAGAGGAGCGGACTGTATCCACTGGTCAGGTGCAGCTATGTAGAGACAGATC CAGGGCTTATATCGGCCCTTGTGGAGAGGTGGCACGAGGAGACTAGTAGTTTCCACATGCCATTTGGGGAGATGACTGTC ACCCTTGACGACGTCTCCGCTCTTCTTCACATCCCGGTTGGTGGGAGATTCTACACTCTAGGAGTGGCCTCGAGATATGA TGTGGCAGAGACCTGCGCTTTGCTGTTAGGGGGGGATGCAGATTTGTACATGGCTGAGTTTGATAGGCTTAGGGGTCCGA CTATGAGGTTCAGCTTCTTGCGAGACCTTTACCCGAAAGCTGTTGCAGGTTTGTTTCATTCATTATCTGAACTTTTTCCA ACTATTATTTATATTTACTTAATCATAATTGGTATTACATTGTAATGTAGAGGGGCGGTACAAGCATGCAGCCAGGATGT ACCTGATGCATCTTGTTGGCGCGACATTGTTCGCCGACAAGAGTGGGGGGCACTCATTCTCCGCCCGTTGGTAGGCATGC TACAGGATCTTGAGCGGGTGTCGGAGTTCGCGTGGGGCGCCATGGCCCTTGCCACGTTGTACGACCAGCTTAGACAGTCT TCTCGCAGCGGGGTCAAACAGATGGGCGGTTACACTTCCCTGTTGATGGCCTGGGTCTTTGAGCACTTTCCAGACAGGCT CGTTCGCCGGTATGCGAACCAGGCTTACACAGAGGACCAGCCCAGAGCTCGTAGGTGGACAGAGTCACGGTCGGGGCATG CTAGGCTTGACGAGAGGCGAGTACTACTTGATGAGTTGACGGCCGACGACGTCACTTGGACTCCATATGAGGCCCACAGG GAATGGCGACAGCGGGATGACAGGGCTTTGTTTTCAGGCTACATTCGGTGTCCCTATCCCCCTGCTGTGCGACCTCATCT TCCGGAGCGGGTCATGCGACAGTTTGGGTATATACAGACGATCCCGCGCCACCCTAGTGAGATGGATAGATCTCCCGCAG CTGAGGCTGTTGATGCGGCATTCGCAGGTTATGTGCAGTACTTGTTCCCTGAGGGCGACCCTGCTATAGAGGAGGGACAG GCTGTGGGCGGTTACATGGATTGGTACGCTAGAGTGTCTCATTGTT
CDS sequence (LotjaGi2g1v0167600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGCCGCTCCAGAGAGATCCATCGTTTCCTGGTGGGCCGGTTGAGTTGTCACTTCTGCAGCATTACCCGGATCACAT AGCGCCGTGGACGTGGCATACCCTACTAGGCACCACTGACCCTCGTTATTCTGAGCGAGGTGATTTGAGGCTTGCCACTG CTGGTACGAAGCTCGGGCTGATGACGTGTGAGGGGGACAATTACAGGGAGGTCCGCTTGATTGTGGAGAGGAGCGGACTG TATCCACTGGTCAGGTGCAGCTATGTAGAGACAGATCCAGGGCTTATATCGGCCCTTGTGGAGAGGTGGCACGAGGAGAC TAGTAGTTTCCACATGCCATTTGGGGAGATGACTGTCACCCTTGACGACGTCTCCGCTCTTCTTCACATCCCGGTTGGTG GGAGATTCTACACTCTAGGAGTGGCCTCGAGATATGATGTGGCAGAGACCTGCGCTTTGCTGTTAGGGGGGGATGCAGAT TTGTACATGGCTGAGTTTGATAGGCTTAGGGGTCCGACTATGAGGTTCAGCTTCTTGCGAGACCTTTACCCGAAAGCTGT TGCAGGTTTGTTTCATTCATTATCTGAACTTTTTCCAACTATTATTTATATTTACTTAATCATAATTGGTATTACATTGT AA
Protein sequence (LotjaGi2g1v0167600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPLQRDPSFPGGPVELSLLQHYPDHIAPWTWHTLLGTTDPRYSERGDLRLATAGTKLGLMTCEGDNYREVRLIVERSGL YPLVRCSYVETDPGLISALVERWHEETSSFHMPFGEMTVTLDDVSALLHIPVGGRFYTLGVASRYDVAETCALLLGGDAD LYMAEFDRLRGPTMRFSFLRDLYPKAVAGLFHSLSELFPTIIYIYLIIIGITL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 74 | 182 | 109 | 2.0E-13 | – | |
PANTHER | 74 | 182 | 109 | 2.0E-13 | – | |
Pfam | 79 | 138 | 60 | 7.3E-17 | ||
TMHMM | 187 | 209 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0167600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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