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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0168200 |
| Transcript ID | LotjaGi2g1v0168200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin receptor GID1A; TAIR: AT5G23530.1 carboxyesterase 18; Swiss-Prot: sp|Q9LT10|CXE18_ARATH Probable carboxylesterase 18; TrEMBL-Plants: tr|A0A1J7HZJ4|A0A1J7HZJ4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0168200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57980544..57981920) extracted from Lotus japonicus Gifu genome v1.2.
CTTATCACACCTTCTTCGTTTCCTTGTTTCTCTACCGAGCCAGCCACCAAGTTAACTCAGCTCAACAGCAACCAACATCC ATGGCAAAAACAACAACTACACCCACCATGAAAAAGCTTCCATGGCATGTGCGCATCTCCCTCTTCCTCCTCTCCGCCCT CTCTGACGCCACTCACCGCTACAACGGCACCATCAACCGCCGCATCTTCAACCTCATAGACCGCAAGGTTCCCCCAGAAT CCAAACCAGTCGACGGAGTCTCCTCCTCCGATGTCACCGTGGACCCCAACCAACCGGGACCTCTGGTTCCGCATCTTTAC CCCCTCTGCCACCTCCTCCACCGTGTCCCTTCCCCTCGTCATCTACTTCCACGGCGGAGGTTTCTCCTTCATGTCTCCGT CTTCAACCCCATACGACACCGTTTGCCGCCAGTTCTGTCGTTCCTTTCACGCTGTGGTCATCTCCATCAACTACCGTCTC ACCCCCGAGCATCATTACCCTACTCAATACAACGACGGATATGATGCCCTTAACTTCATTGACCAAAACGACAATATTTT GCCTCGTTTCACTAATGTCAGAAAATGCTTTTTGGCGGGTGACAGTGCGGGTGGGAACTTGGCCCACCACGTGGCGGTTC GGGTGGCCCGAGAGAGGCTCCGAAATATCAAGGTTATTGGGCTCATTTCGCTGCAGCCATTTTTTGGGGGAGAGGAGCGA ACCGAATCTGAAATCTGGCTCAAGAAGGTTCCAATTATCCCGGTGGGAAGAACCGATTGGCATTGGAGGGTTTTTTTGCC AATCGGGTCAAACCGGGATCATGAAGCGGTTAATGTGAGCGGGCCGAATGCTGAGGATATTTCGGGTTTGGATTACCCGA AAACACTTGTGGTTGTGGCCGGATTCGATCCTTTACATGATTGGCAGGTGAAGTATTATGAGTGGTTAAGGAAATCAGGG AAGGAGGCACAACTAATTGAATATCCAAACACATTTCATTGTTTTTTTGTTTTTCCGGATTTGCCCGATTCTTCTCATTG GATTTCTCAGGTCAAGGAATTCATAAGCAAGCAAATTTCTAGTGAAACTTAAGGAGGGAAGGGGATAAAAGTGAGAAAGG CTAACAACATACTCTTATAACACACATATTGTGCTTTGTTTTATTTTTTAAAAATCTAACACATTTCTCTCACATTTTAG AAAATGTGTTGATATATATATATATACACTGACTCAATAGAAGTTACCCATAACAAATACAAAAATGGAGAAATCATTTA CTCAAAGGTAAAGATCCTCAAAGTTCTCAACATGCAAGAATGGAACCAACCTCTATTCCAATCAAAACAATTCTCAAGAG TATTTACTCCATCAGGG
CDS sequence (LotjaGi2g1v0168200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACCGTGGACCCCAACCAACCGGGACCTCTGGTTCCGCATCTTTACCCCCTCTGCCACCTCCTCCACCGTGTCCCT TCCCCTCGTCATCTACTTCCACGGCGGAGGTTTCTCCTTCATGTCTCCGTCTTCAACCCCATACGACACCGTTTGCCGCC AGTTCTGTCGTTCCTTTCACGCTGTGGTCATCTCCATCAACTACCGTCTCACCCCCGAGCATCATTACCCTACTCAATAC AACGACGGATATGATGCCCTTAACTTCATTGACCAAAACGACAATATTTTGCCTCGTTTCACTAATGTCAGAAAATGCTT TTTGGCGGGTGACAGTGCGGGTGGGAACTTGGCCCACCACGTGGCGGTTCGGGTGGCCCGAGAGAGGCTCCGAAATATCA AGGTTATTGGGCTCATTTCGCTGCAGCCATTTTTTGGGGGAGAGGAGCGAACCGAATCTGAAATCTGGCTCAAGAAGGTT CCAATTATCCCGGTGGGAAGAACCGATTGGCATTGGAGGGTTTTTTTGCCAATCGGGTCAAACCGGGATCATGAAGCGGT TAATGTGAGCGGGCCGAATGCTGAGGATATTTCGGGTTTGGATTACCCGAAAACACTTGTGGTTGTGGCCGGATTCGATC CTTTACATGATTGGCAGGTGAAGTATTATGAGTGGTTAAGGAAATCAGGGAAGGAGGCACAACTAATTGAATATCCAAAC ACATTTCATTGTTTTTTTGTTTTTCCGGATTTGCCCGATTCTTCTCATTGGATTTCTCAGGTCAAGGAATTCATAAGCAA GCAAATTTCTAGTGAAACTTAA
Protein sequence (LotjaGi2g1v0168200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPWTPTNRDLWFRIFTPSATSSTVSLPLVIYFHGGGFSFMSPSSTPYDTVCRQFCRSFHAVVISINYRLTPEHHYPTQY NDGYDALNFIDQNDNILPRFTNVRKCFLAGDSAGGNLAHHVAVRVARERLRNIKVIGLISLQPFFGGEERTESEIWLKKV PIIPVGRTDWHWRVFLPIGSNRDHEAVNVSGPNAEDISGLDYPKTLVVVAGFDPLHDWQVKYYEWLRKSGKEAQLIEYPN TFHCFFVFPDLPDSSHWISQVKEFISKQISSET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Gene3D | 3 | 267 | 265 | 5.5E-79 | ||
| SUPERFAMILY | 7 | 268 | 262 | 2.32E-55 | ||
| PANTHER | 8 | 271 | 264 | 6.1E-119 | – | |
| PANTHER | 8 | 271 | 264 | 6.1E-119 | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| ProSitePatterns | 30 | 46 | 17 | - | ||
| Pfam | 30 | 246 | 217 | 5.4E-56 | ||
| Phobius | 34 | 273 | 240 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0168200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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