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LotjaGi2g1v0168300.2

Overview

Field	Value
Gene ID	LotjaGi2g1v0168300
Transcript ID	LotjaGi2g1v0168300.2
Related isoforms 2	LotjaGi2g1v0168300.1 LotjaGi2g1v0168300.3
Lotus japonicus genome version	Gifu v1.2
Description	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|B1Q3J6\|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B; TrEMBL-Plants: tr\|A0A1J7GEV5\|A0A1J7GEV5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0168300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:58002301..58003142) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTGTCTTGACAGATCATATCTCAAAGGAGATGAATGAGTTGAACTTGATTCGGTGTCAGAGAATACCGAAGAAACC AGGTGCTGATTGGCGTGCCCTTCCAGATGAGAAGGTAAAATTAAATTTGAATAGAACTTTAGCATAACAGTTTTGTGATT TATCTAACTTGTGATTATAAAATGCAGATAACATTGTCTACTGGACAAGTTGTTGATTTGATACCATGGTGCTTGCCAAA CACAGCTGATCGACACAATCAGTGGAAGGGATTGTTTGGTAGGTTGGATTGGCAAGGGAACTTCCCAACTTCCATCACAG ATCCTCAACCAATGGGCAAAGTTGGAATGTGCTTCCATCCTGATCAGGATAGGATTCTTACTGTTCGTGAATGTGCACGC TCTCAAGTAAGTTGTCAGTTGTCACCATAAATGCAATGATAAAAAGGGAATCCTAACTGATTTGATCTGTCATTTCTGAA TTTTTATGGAAAATACTCAACATGTTATCCAAATATTAGTTCATAGTTTCATTTGTGTTGTCCAAAACATTAGATTGTAT AATTGGTTGGTGGGTGTAATAGTCCTTAATTACTTAGCAATGGTTCCAACTCCCAACCCCCAAAGCTCTCTGCCTAAGAA ATTGGAAGATGTCATCTGATTTAGTATGATCTCTTTGGCTTATCTTTTTTATCTATAAATGCAGGGCTTCCCAGACAACT ACCAATTTTCTGGCAACATTATACACAAACACAGGCAGATTGGTAATGCTGTTCCTCCTCCTCTAGCATTTGCTTTAGGG AGAAAGCTCAAGGAAGCGGTGGATAGTAAGGGCTCCACTTAG

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0168300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGTCTTGACAGATCATATCTCAAAGGAGATGAATGAGTTGAACTTGATTCGGTGTCAGAGAATACCGAAGAAACC AGGTGCTGATTGGCGTGCCCTTCCAGATGAGAAGATAACATTGTCTACTGGACAAGTTGTTGATTTGATACCATGGTGCT TGCCAAACACAGCTGATCGACACAATCAGTGGAAGGGATTGTTTGGTAGGTTGGATTGGCAAGGGAACTTCCCAACTTCC ATCACAGATCCTCAACCAATGGGCAAAGTTGGAATGTGCTTCCATCCTGATCAGGATAGGATTCTTACTGTTCGTGAATG TGCACGCTCTCAAGGCTTCCCAGACAACTACCAATTTTCTGGCAACATTATACACAAACACAGGCAGATTGGTAATGCTG TTCCTCCTCCTCTAGCATTTGCTTTAGGGAGAAAGCTCAAGGAAGCGGTGGATAGTAAGGGCTCCACTTAG

Download CDS Sequence

Protein sequence (LotjaGi2g1v0168300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVLTDHISKEMNELNLIRCQRIPKKPGADWRALPDEKITLSTGQVVDLIPWCLPNTADRHNQWKGLFGRLDWQGNFPTS ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDNYQFSGNIIHKHRQIGNAVPPPLAFALGRKLKEAVDSKGST

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10629 View details on PTHR10629 Search for proteins/transripts with this domain View external data on PTHR10629	2	153	152	4.7E-100	–
PANTHER	PTHR10629:SF48 View details on PTHR10629:SF48 Search for proteins/transripts with this domain View external data on PTHR10629:SF48	2	153	152	4.7E-100	–
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	4	148	145	1.66E-27	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.90.120.20 View details on G3DSA:3.90.120.20 Search for proteins/transripts with this domain View external data on G3DSA:3.90.120.20	43	114	72	1.8E-52	–
Pfam	PF00145 View details on PF00145 Search for proteins/transripts with this domain View external data on PF00145	67	147	81	8.0E-17	IPR001525 Show description in modal box View details on IPR001525 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	115	148	34	1.8E-52	–
ProSitePatterns	PS00095 View details on PS00095 Search for proteins/transripts with this domain View external data on PS00095	128	146	19	-	IPR031303 Show description in modal box View details on IPR031303 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0168300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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