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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0171100 |
| Transcript ID | LotjaGi2g1v0171100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56370.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g56370; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0171100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58640962..58645238) extracted from Lotus japonicus Gifu genome v1.2.
GAATTCTAGGAGAGTAATATTCACCACATACATTACGTAGACACCGTCAAACTCAGTTTTAGGTTTATCTCCCGTAGCAA ACGCAGCAACTCCGGCATCACCGTACCCATGGACCGTGCATGGAGACCAACGAACCTGTAAGATTAGATTCAATTCTCTG ATTTCTGAATTTGCATTCAAAATTTGCTATGGAAGACGATAGGATTAGCAATTTACCGGAGGAAGTTCTCAGCCACATCC TCTCTTTTCTCCCAACAAAGAAAGCGGTTGCAACAAGCGTTCTCTCGAAGAAGTGGAAATCACTCTGGCGATCACTCCCC ACTCTCGACTTCGACGATGCCAACTATGCCATAACCAAAGAAGATTATGCTCGCTTTGTTCAGTCCGTGTACGCAGTCAT CCTCTCCCGAAATCTCCTCCAACCCATCCAAAAATTCCGCCTCAATTGTGTCTTTTCTCCTTATTGTCATATTGCCAATA TCAAAATATGGCTTAATGCCGTGGTGCAATGCGGAGGACTTCACCACCTAGATATCTCCATCGGCTATCAACAACTAACA CCCGCCATCTTCACTTGCAAAACTCTTGTAGTTCTCAAGCTGCAGCTGGTAGATTTGAAGCCTCTTAACAGCTCTGTTGA TCTTCCCTTCCTTACAACCCTGCATATGGAAGATGTGTTTTTCTCAAAACTCGGATGTCTCGCCGAGCTTCTTTCTGGAT GTCCTGTTCTCGAGGATTTCAAAGCAGAGAATTTAGAATTTGGTAGTCAGCTCACGGATAAGGAGTTTAAAACTCTACCC AAGTTGGTCAGAGCAGAGTTTTCAATGATGGACAAACTTTTTCTCATGAAGGTGGTTAGCAATGTCGAGTTCTTGCACTT AAATGGGGTAGGTAATGTGATTTATGCATTATTCTTAAGGAAAATGGGATACTTAATTATTTCTTGCTTGTTATTGTAAC TCATGCAGTTTGGTTGGGAACTCTCACATGATGAACATCCAGGCACTGACCCTTACTTTCCCATGTTTCACAATTTAACC CGTCTCGAGCTTTTCTATAGACATTGTAATAACGATTGGGGTGAGGTTGTGGAATTTCTCAAGTATTGCCCCAAGCTTCA AGCTCTTCTCATTGAGCAGGTGTGTTTAGAGGCTTAAATGATTTTTTTTACACTCCTTACATGTATGTTTTCATTTATTT ATTTTGTGTTTATTGTTGACAGCCACATTTGCATGGCCATGCGTTTGATGGATTTGAAGAAGTAGGAGACTGGCAATACC CGCCATCAGTTCCTGAATGCATTCTATTACAACTTAAAAGTTGTTATCTAAATGATTATAGAGGGACCGGAGGTGAGTTT CAATTTGCAAGATATATTCTCCATAATGGAATTTTTTTAAAGAGGATGACAATATGTAGTGAATCTACAGTAAGCCGACA AGGAAAGCATAAGAATTTTAAAAAACTATCCTCATGCACGAGGAGCTCTACAACTTGTGAACTTTCCTTTAAATGATTAC AAACTACATTTGGTACCTGCAGGTAGTTTCTTCATTTCCTCCTTTTATTAGTAGCTAAGAACAAGCATATGGACCTTGTC TTAATTTGATAGTCGAACTTGTTATTTACTGATGATTAATTTGAGGGTCACGTACTACAGGGCTCTCTGTTTTGTCTTTT TTCAAAATTTATATTAGACGGGTCAAATTTTGGTGTGTTTCTGTTACACAAGATGGTGCTATACCTTCATATATCACATC ATTATTTTGGTGTTAGTATGCAGAAATTTAAGTATTCCCTTTGCGTGTTGAAACAGCAATTCTTTTAGGTGATTGCTACG ATACCACAGCACTTGTGTGGGTATGATACACGAAAAGGTTGTGAACCAATCACATCCTCCGTATTTAAAAAGAAAAAAAT GAAAATATAAATTATTTTTGTTGTGGACCAATCACATCCTTCATGTATGATACATTTTGGGTATCATAGAAACCACCATT CTTTTATTCTTATTTACTGTATATTTATTACTAGTTTTTTGTAATAGTTGAGCAAGTTGATTCAAATGATCTAGCTAGCA ATTACATCTCATAAAACAACACTGAAGGCCACGAAAAATGGGTTTCTAATATATGTTTTATGTTTTCTCTAGTTTACATA TATGTTCATTTCCACATTGAAGCTGATCTGCCATGCATACAGAGTGGGTGCTTTTAATCACTCATCTTTTGTGGTGACCT CACCATTTATCTGTTCAGTTCAAGTGAACAATAGGTAACAATAGTTCCTCCTTGTTTTGTTGAGGCTTGATGAGTGTGCC AGTTACTGTGTTTTGTTTGGGAGGCTACAACATGAATGGCACATGCCCTATTAATGCTGTGGTTGAATAATGTATATGAA AAAAGATAGTAAAATACTGATGGGAAGAGTTCTAAGACACCTAATTCTGCTTTAAGAGATTAGGCTCTAGTCATGTTTTG CTTTTGGAGTTTTAATTACATGTTTTATCATGCCCTGTTTGTGAAACTGAAATTCATTTTCAAGTACAGCAACAATCATA ATCCATTAAGTGAGGTTGGTTGTATGGATCCAGATGACGCCACGCTCAATTAAAAACTTTTGAAAAGCCAAATTTTGTTA GATATTTTTTATTGAGATCACTTTTATTAAGATCCTCTCACATCATTTTACCTGTGTTTTAACTTTTACGAGAGACAAAT TGGGAGGCTGACAAACTTCCAGTGTTGTCTGCGTATTTAAAGCTTGGTCTTCTCATAGCTCAAAATATAAAAGCTTTTAC AAATGCAAGTCTTTAGTAAATTTAAATTTCATATTTGCCTATTCATTCACTTATAACCAACAATTGTTTCAATCTTTCTA GAACGGAAAAAGTACTACATTATGAGGTATAAATTTCTTCAATAATGTTCGCTTTCCTGAATGAAAGAAGAATCCACTGC AATTATCTTGGCATGTGGATAACACAACACAGACACTTTCCTTCCCTCATGTGATTAATTAAAAGCTTTGTTATTGTCAT CAAATGGTAATTTGTGTGTTATATTTCCTGCATATTAATCATAGACATATTTTTTTTTTGTTAAAAACATTGCTTGAAGG AATACATCTCCACTCTGAAACTTGTAAGCAATAAAATGAATAACAAAAGCCCATAAAACATAGAAACAATTCCTGACAAG CATTTGGCTTTGTACTGTTAACCCCAGGAAGTGGCAGATCCAGGATCCGGGGTTTAAATTTTTCAAATGAACACATCGGT AAAATTATAATTAAAAACAACTTTAATATGTTTATACAAGTCATAATTGTCCTCTACGTGATTTCATGTTATGAAATCGT TGAACAATAAGCTCAGAATCAATTTATTAATGGTAGGAAAGTTCTTAGGGTTTTAATGATTCACACCGAACTTGAAACAA TGCCTTTTGTGACAACCAATTGAAAAAATCATCATCAATTGTGGGTTCTGTCTGCACTTTCTGAAGGTTAGGAATCATAA ATAATGCATCTCTTTTTCTCACTTTGCATTTTGTACATGGTAATTGTCTCAATGCAAAATGCAGCATGAAGGGTGATAAA GAAAGAAAGAAAAAAAATGTCCACACTCCACACGCGTTGTTTTGTTGGTTCATTTTGCTACTTATTTTCCAGGTTAGCTA CTGATTAAGGAGGCAACAACCCCTTTCCCCTAGCCACCCATTGGATTCTTGGCATCAACCACTACCAGCAAAAGATTGAG TCCTCTTGTTCATTCATTACAAATGTTTTCTTTTTTCTTTCCTATTTCAGGTCGAGAAAACATGAAATCTGTAAAGATAG AAACTATATCATATGCAATTTTTGCCTTCAAAATTAGAAGGAAAAAATAAGAGGACTTCCTACAATTCTGCTAAACAAAA CTTTCTAGTTTCTAGATAGCATTTTTTTGGTATTAGAGTCTACAATTTGACAAGCAACATTTAATCCCCGTGCTTTCTAA ACAGAACTGTAGAGTGTAGATACATGACATGAATTGAATGGTATTCAGAAAAATTAAAGAAATACAATACTGTGAAGATC AACGGCGCAAAGCGTGACGGGTGAGGAGGGAGGGGCGGCGGCAGCAGCAGGAGACGCCGTGAAGATCGAAGGCACGGAGC GTGACGGGCGAGCAGCGAGGTGCGGCGCGCGGTGTACTGGTGTTGGTGGCATGGTGGGTGCTTGGGTGGGAGGGACGTAG GGTACACGAGAAAGAGAGTGATTGAGTGAGGTTTTTC
CDS sequence (LotjaGi2g1v0171100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACGATAGGATTAGCAATTTACCGGAGGAAGTTCTCAGCCACATCCTCTCTTTTCTCCCAACAAAGAAAGCGGT TGCAACAAGCGTTCTCTCGAAGAAGTGGAAATCACTCTGGCGATCACTCCCCACTCTCGACTTCGACGATGCCAACTATG CCATAACCAAAGAAGATTATGCTCGCTTTGTTCAGTCCGTGTACGCAGTCATCCTCTCCCGAAATCTCCTCCAACCCATC CAAAAATTCCGCCTCAATTGTGTCTTTTCTCCTTATTGTCATATTGCCAATATCAAAATATGGCTTAATGCCGTGGTGCA ATGCGGAGGACTTCACCACCTAGATATCTCCATCGGCTATCAACAACTAACACCCGCCATCTTCACTTGCAAAACTCTTG TAGTTCTCAAGCTGCAGCTGGTAGATTTGAAGCCTCTTAACAGCTCTGTTGATCTTCCCTTCCTTACAACCCTGCATATG GAAGATGTGTTTTTCTCAAAACTCGGATGTCTCGCCGAGCTTCTTTCTGGATGTCCTGTTCTCGAGGATTTCAAAGCAGA GAATTTAGAATTTGGTAGTCAGCTCACGGATAAGGAGTTTAAAACTCTACCCAAGTTGGTCAGAGCAGAGTTTTCAATGA TGGACAAACTTTTTCTCATGAAGGTGGTTAGCAATGTCGAGTTCTTGCACTTAAATGGGTTTGGTTGGGAACTCTCACAT GATGAACATCCAGGCACTGACCCTTACTTTCCCATGTTTCACAATTTAACCCGTCTCGAGCTTTTCTATAGACATTGTAA TAACGATTGGGGTGAGGTTGTGGAATTTCTCAAGTATTGCCCCAAGCTTCAAGCTCTTCTCATTGAGCAGCCACATTTGC ATGGCCATGCGTTTGATGGATTTGAAGAAGTAGGAGACTGGCAATACCCGCCATCAGTTCCTGAATGCATTCTATTACAA CTTAAAAGTTGTTATCTAAATGATTATAGAGGGACCGGAGGTTAG
Protein sequence (LotjaGi2g1v0171100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDDRISNLPEEVLSHILSFLPTKKAVATSVLSKKWKSLWRSLPTLDFDDANYAITKEDYARFVQSVYAVILSRNLLQPI QKFRLNCVFSPYCHIANIKIWLNAVVQCGGLHHLDISIGYQQLTPAIFTCKTLVVLKLQLVDLKPLNSSVDLPFLTTLHM EDVFFSKLGCLAELLSGCPVLEDFKAENLEFGSQLTDKEFKTLPKLVRAEFSMMDKLFLMKVVSNVEFLHLNGFGWELSH DEHPGTDPYFPMFHNLTRLELFYRHCNNDWGEVVEFLKYCPKLQALLIEQPHLHGHAFDGFEEVGDWQYPPSVPECILLQ LKSCYLNDYRGTGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 327 | 326 | 8.5E-27 | ||
| PANTHER | 3 | 327 | 325 | 2.1E-63 | – | |
| PANTHER | 3 | 327 | 325 | 2.1E-63 | – | |
| ProSiteProfiles | 3 | 51 | 49 | 11.061 | ||
| SUPERFAMILY | 4 | 73 | 70 | 7.06E-14 | ||
| Pfam | 5 | 43 | 39 | 1.4E-9 | ||
| SMART | 9 | 50 | 42 | 4.7E-5 | ||
| SUPERFAMILY | 64 | 302 | 239 | 6.67E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0171100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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