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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0171200 |
| Transcript ID | LotjaGi2g1v0171200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G10400.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0171200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58661774..58664204) extracted from Lotus japonicus Gifu genome v1.2.
AACGACAGGAAAGTGAAAATTCACGAGATACACAGACACCGTGAAATACGTTTAGGGTTTAGCTCCGCTGCAAAGCCCTT AACATTCATTCCCCTACTATGTACGGTGGTCTGAGACCATGCCGGTGAACGGAAACTGTAAGACTCAGTTGCAGTGATTT GCAAATTCGAATTCATCTTCTAGACTTCTAAGATGGTCGATACGATTAGCATTTTACCAGATTCAATTCTCTGTGACATT CTTTCCTTTCTCCCAACCAAGCAAGCCGTTGCAACCAGCGTTCTCTCGAAGCGGTGGAAGCCTCTATGGCTTTCAGTCCC AACTCTCGACTTCGACCATGTTCTACTCTACAACAATGAGGACTCTGCTCGCTTTGTTCAGTCCGTATATGCAGTCATCC TCTTCCGAGATCAACACCAACCTATCCACAAATTCCGCCTCAACTGTGCCAATTGTGATCATCTTGATGTTGTCAATGTC AACGCATGGCTTCATGCTGCGGTGCAACGCCGAATTCACCACCTAGATATCTCCCTCAGCTTTGATCAACCAAAATCGTT CATCTCCCCCGTCATCTTCAGTTGCAAAACTCTCGTGGTTCTCAAGTTGCAGGGGGTAACATTGAAACCTCTTGACTCCA CTGTTGATCTTCCATTGCTTAAAATCCTGCATCTACAACAAGTGTTTTTCAAAAATCGCGGATGTCTCGCCGAGCTTCTT ACCGGGTGCCCTGTCCTTGAGGATTTCAAAGCAGATAATTATGGTTCTGCTACTCAGGTCACCACTAGTAAGGAGTTTCA AACTTTGCCCAAGTTGGTCAGAGCTGAAATTTCAGTTATACCTGCACCTTCGCTCATGATTGTGGTTAACAATGTCAAGT TTTTGCACTTACACTGGGTAAGGTGATTTATACATCATTCAGTTTCTCTTTATTTTTAAGGAAAATGGGATACTTATTTC TTGCTTGTTAATGCTATTGTGACTAATGCAGTTTGGTGGTTGGATTTGGAAACTCTATTGCCACGGTCGAGACAAATACC TCCAGTTTTTCTCTATGTTTCACAATTTAACCCGTCTTGAGCTTTCCTATTTGCATTGTTATAACGATGGGTATCAGGTA GTGGAATTTCTCATGAATTGCCCTAAGCTTCAAGTTCTTGTCATTAACCAGGTTTGTTTAGATTAGAGGCTTAGAACGAT TTCTATTTTTCGACACTTTTTCACACGTTTTCATTTATTTATTGTGTTCATTGTTGACAGCCACATTATGAAAAATGTGC GTGTGATGGAATTGAAGAAGTAGGAGATTTGCAATACCCTTCATCAGTTCCTGAATGCATTCTATTACACCTTATAAGTT GCTGTTTAAATGATTATAGAGGCAACAAAGGTGAGTTTCAATTTGCAAGATATATTCTCCAGAATGGAAGATTGTTAGAG AGGATGACAATATGTAGTGATTCTACAGTAAATCGACAGAGAAAGCATAAGAATTTTAAACAATTATCCTCCTGCACGAG GCATTCCGCCACTTGTAAACTTTCCCTTAAATGATTACAAACTACATTTTGTAGCTGCAAGTAGTTTCTTCCTTTTAATT AGTTGCTATCTACATATGAACCTTGTCTTAATTTGATCATCGAACTTGTTCTTTACTGATGATTAATTGCAAATTAAAGA TGTTGAGCTCTAGATTGAGGTTATTGTATGTCAAATTTTGATCTTGTGTGAACCTCCATGGTAGGTAAGTGTGAATTCTC TCTCAAACAAGGGCAGTTGCACTCAAATATCAAACATTTAGTTGTTTGTTAAAATTTAACTCTCTTTTCGGTTTGGTAGT ATTAATTTTTTATTATTGTTGTGTATGCATGTTGTAGCAGAATCTGGTCAGAAACTCAGAGTTAAGATTTTACCTAAGAT AATGTTATCTTTTCAATAAGAAAGGTTATGACTTGTACCAGTATCTCGGGTTGTCAATAGCGCGCTATAGCAGATTGTTA ACCTCAGGGAAAATTTTGAGAGATATTATAGGGTTTCTGTTCGCAAACTTTATGAAAATGTCTGGTTGTAGTAAAAACCC TTACTCAGCACCTTTCATCTCTTCTCTGTTTGAGACTCCGAGTTAACCCATCATCGAGACACCAACGACCAGCCACCACA AAACCCTGTAGTGACCCTCCCTTTTCAGTCTCTAAGTCTAGTAGTAGCTATGGAAGGTCAAGTAGTAGCTATGGAAGGAT GCGGTCTTCTCTTTTTATACGTTTTGCTTGTTCTTTTGTGATTTATTTTGTCTCTATGGTCAGACACAATAACTATTCTC TTCTAGTTCTTGTTTTTCCTCATTTTTATTTGTTTTGTTGGTTCTTTTTAGTATGTTTTGTTTAAGATCTCTACAACTTT TTAATGTTAATTATGAATGTCAGTGTTTGGG
CDS sequence (LotjaGi2g1v0171200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCGATACGATTAGCATTTTACCAGATTCAATTCTCTGTGACATTCTTTCCTTTCTCCCAACCAAGCAAGCCGTTGC AACCAGCGTTCTCTCGAAGCGGTGGAAGCCTCTATGGCTTTCAGTCCCAACTCTCGACTTCGACCATGTTCTACTCTACA ACAATGAGGACTCTGCTCGCTTTGTTCAGTCCGTATATGCAGTCATCCTCTTCCGAGATCAACACCAACCTATCCACAAA TTCCGCCTCAACTGTGCCAATTGTGATCATCTTGATGTTGTCAATGTCAACGCATGGCTTCATGCTGCGGTGCAACGCCG AATTCACCACCTAGATATCTCCCTCAGCTTTGATCAACCAAAATCGTTCATCTCCCCCGTCATCTTCAGTTGCAAAACTC TCGTGGTTCTCAAGTTGCAGGGGGTAACATTGAAACCTCTTGACTCCACTGTTGATCTTCCATTGCTTAAAATCCTGCAT CTACAACAAGTGTTTTTCAAAAATCGCGGATGTCTCGCCGAGCTTCTTACCGGGTGCCCTGTCCTTGAGGATTTCAAAGC AGATAATTATGGTTCTGCTACTCAGGTCACCACTAGTAAGGAGTTTCAAACTTTGCCCAAGTTGGTCAGAGCTGAAATTT CAGTTATACCTGCACCTTCGCTCATGATTGTGGTTAACAATGTCAAGTTTTTGCACTTACACTGGTTTGGTGGTTGGATT TGGAAACTCTATTGCCACGGTCGAGACAAATACCTCCAGTTTTTCTCTATGTTTCACAATTTAACCCGTCTTGAGCTTTC CTATTTGCATTGTTATAACGATGGGTATCAGGTAGTGGAATTTCTCATGAATTGCCCTAAGCTTCAAGTTCTTGTCATTA ACCAGCCACATTATGAAAAATGTGCGTGTGATGGAATTGAAGAAGTAGGAGATTTGCAATACCCTTCATCAGTTCCTGAA TGCATTCTATTACACCTTATAAGTTGCTGTTTAAATGATTATAGAGGCAACAAAGGTGAGTTTCAATTTGCAAGATATAT TCTCCAGAATGGAAGATTGTTAGAGAGGATGACAATATGTAGTGATTCTACAGTAAATCGACAGAGAAAGCATAAGAATT TTAAACAATTATCCTCCTGCACGAGGCATTCCGCCACTTGTAAACTTTCCCTTAAATGA
Protein sequence (LotjaGi2g1v0171200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDTISILPDSILCDILSFLPTKQAVATSVLSKRWKPLWLSVPTLDFDHVLLYNNEDSARFVQSVYAVILFRDQHQPIHK FRLNCANCDHLDVVNVNAWLHAAVQRRIHHLDISLSFDQPKSFISPVIFSCKTLVVLKLQGVTLKPLDSTVDLPLLKILH LQQVFFKNRGCLAELLTGCPVLEDFKADNYGSATQVTTSKEFQTLPKLVRAEISVIPAPSLMIVVNNVKFLHLHWFGGWI WKLYCHGRDKYLQFFSMFHNLTRLELSYLHCYNDGYQVVEFLMNCPKLQVLVINQPHYEKCACDGIEEVGDLQYPSSVPE CILLHLISCCLNDYRGNKGEFQFARYILQNGRLLERMTICSDSTVNRQRKHKNFKQLSSCTRHSATCKLSLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 389 | 388 | 5.1E-71 | – | |
| PANTHER | 2 | 389 | 388 | 5.1E-71 | – | |
| ProSiteProfiles | 2 | 50 | 49 | 8.994 | ||
| Gene3D | 3 | 382 | 380 | 1.2E-25 | ||
| SUPERFAMILY | 3 | 59 | 57 | 5.76E-12 | ||
| Pfam | 4 | 39 | 36 | 2.5E-6 | ||
| SMART | 8 | 49 | 42 | 9.4E-4 | ||
| SUPERFAMILY | 84 | 295 | 212 | 3.06E-13 | – | |
| Pfam | 156 | 180 | 25 | 3.1E-4 | ||
| Pfam | 315 | 359 | 45 | 2.3E-13 | ||
| SMART | 320 | 392 | 73 | 7.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0171200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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