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LotjaGi2g1v0171400.1

Overview

Field Value
Gene ID LotjaGi2g1v0171400
Transcript ID LotjaGi2g1v0171400.1
Lotus japonicus genome version Gifu v1.2
Description Polyribonucleotide nucleotidyltransferase; TAIR: AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein; Swiss-Prot: sp|Q9LX74|EXOS5_ARATH Exosome complex exonuclease RRP46 homolog; TrEMBL-Plants: tr|I3SU44|I3SU44_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0171400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:58669376..58673873) extracted from Lotus japonicus Gifu genome v1.2.

GTAATTATGAGAAATTCGAAAATTAAGGGTTTTAGGTAGCCTGTTCGCGCGCGCCTCCTCTTCCTCCGTTCCTCTCGCCG AGTCTCACTCCGTCGCCGTTTCTTATTCCTACCGCCGCACTTCTACATCGCCGACCACTTCAACGCAGTGCCAAGCCTTC ACACTGAGCTTGCTGTCCTGAATCATCAAAGACGTAAGATTCCTCATCTTCTTTCATTTACACTTTCTTCTGTTTGCTTA ATTTTTTTTCACAGTTTGGGATTTGATGGTGTTATTTTGAGGATTTAGGTTTGGCACTGATGGTCTAATTATAGGATTAT ACTCTTTTTCATGCTTAATTAGAGCTTGTGTTTTAGTTCATTCTGGGGATTTAAGTTTTTCACATTTGGATCTTATGGTG TTAACTGTTAACTGTTCTTCATACAATTTTTCTCCTTTTCATTCTTAATTTGAGAGTATGTTTCAGTTAATCATGTGTAT TTTGATTTTGCATTTTGGGGGCATTTTGAAATAGAAAATACGATCCAATCCAAGCCAACCTTAATTGATCGGTTTAGATT CATATACACACCAAATACGATTCAAACCAACCCTTGAGCACTCCTAGTGCTAATGCGGTGCTTGATTAAATGCTTGAGTC ATCTTTTAAAGTAATTAAAAACGAGTTTATGCAAGTAATAACTCGATTTTTCAGCCTAAACTCGTAATAATGATATCACG AGATATATTGTGAGTTTAACAATGATGCTGATGAGTGAGTTTGAATGGTAGGGTGGTTTGAACATGTTTTTCATTTTTCA TCTTCTCGAAGGTGGCGCGTGAAGTATTAGGGATTCAAATTCAATGGAGATTGATAGGGCTGATGGGAGGAGTCCCAATC AACTAAGGCCCCTGGCATGCTCTCGTTCCGTCCTTCACAGAGCCCACGGCTCAGCCTCCTGGGCTCAAGGAGAAACTAAA GTCTTTGCTGCAGTTTACGGACCCAAAGCTGGAACCAAGAAGAATGAAAACCCTGAAAAAGCTTCCATTGAAGTTACTTG GAAGCCTAACACAGGACAGATTGGTCAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACCTTGGAAAGCATATGCA TTCGAAGCATATATCCCAACACCACCACTTCCGTTATAGTCCAGGCAAGTTTGACATTTCCTGGGGTTCCTGTTTTAAGA GTTCAAGTATTTTGGTGACACATTCTGTTTGACGTTGACTAAAAATACTTTATTTGTTTACATCGGCTTTTTGTTACATT TTGGGATTGAACATTCTTCATTTCTAATGCAGGTTGTCCATGACGATGGTGCTGTATCCTACTTTAAAATTCAGTTCTAA TATGATTTATGTCGTAACAGCTTCCTTTAAGATTAATATTATTTAGTTCTGTTACCTTCCATTTGAATTGGACAGTTCAT CAATTCTACTTGTTATGATTTGAATTGTGGCATGTGTTCCTTAGGTTTTAGTTTGATACTGAAAGTGTGCTATTGCTTGG CTTTTAACTCTACATTAGGTGCTGTATTGTTTTTTATGGTCCATTCTTGACTTGTAAACTCTGTTAAATTGAAGGAAAGA CTACTTTTCAATGAGTCATGTGGTGCTATAATAGTTCTTTATTTCTCTATGAAGGATTTCAAGTGTTTTACTAGTTTCAT GTTAGGGCAACAATATTTCATCTTTTTGACTTCATAAGAGCAAGCTGTGAGAGCTTCCTTTTGATTGCTTGTATCATACA CCAGAATGTATTATGATACTCATGATAGTGCTGATGATCCATATTCATCCATCAGATACTTGCATGAGTGCAATTTCATC TCTCCTTTTTTGAATTTTTTTTATTGAATATATTAGAGCCATTTTCTGTTCAAGTTTTTACTTATTTATGTTCTTCCACA AATTTTGCTCCGCTATTTTCCCACTTAAGGCTCAATGTTCAATTAATAAAATGAATGGTGGGCACTGGGAAGTTGTGTTT AGTCGTTCAGTTCTGAGGCATGAGCTACTTTTTTGGTCCGTGAAGGAACAAAGTAGGTTAACACATTACCATCAATTCCA TCAAATATATATACTCCATTTTTCTTTTTATTGTTTATCGCATGAGAAATGGAGGCTAAAAAGAGACCAATATGTAATAT ATATGCTTCTGAATATTTTGCTTACTTTTCTTGACTTAATATGTAGCTTCTTCCATGTGCAATTAATGCAGCATGCGCTG CACTTGTTGATGCTGGAATCCCCCTAAGACATCTTGCTGGTAATAAAGACTTATTGGATATTGTCTTTTGGGTTATTTTG TTCAAAGATAATTATTTCTTATCTTTGTCTCTACAGTTGCAATATGTTGTTCTGTAGCAGATAATAGTTGTATTATACTC GACCCGACTAAACAAGAAGAGGAGGTTAGTGGAATATCTTTTGTTTAATTTAAAGTACTAATTTGTTTCCTCCTTATGTC TAGTGAGTTTAGTTGGCCAAATAAATGTGTTCTGCATTTACTATGTTCGTATGCCTGTTGATATATGAAGTGTTCTAAAT AACCTGTGGGCAATACTTGAAATCCTTTTCTCTCTTTTCAGTTATTGTTGTCAAAACAACCATTTCATGTACCCGTGATA CTATAACTGTTGTATGATCCTCATTGATGTTGTGTTAAACTGGAATCTGGAGAAAATGAAACTTTTATTAAGTTGCCCAA GGCAGAGCCTGTACCAATGTAATCCCAGTCCTAGGTATCGAAAAGAACAAGATTTCAATGCAATATGCACATCTGTTTAA CTTGAGAAGGCCAGCTTTTCACCAATTCACCCTCTCTCCTTGAATTACAATTGTTGGATATCTCTCTAATGGCTATTTCC CTTTTTATACAAACTGACCCAATAACCAACCTAGTTACCATTATCTGCTGTCATAAGTTCATTACTACCTAATCGGTGAT GCGGTTCAGGGGTTATATTCCTCTGTTGCCTCTCTATTTCTCCTAATATACACCCTCTTAATAGTTGGTCAGTTTATCAC GTTGCAAGGCTAACTTCCTTTGAGCCTTTGAGGTTTGATTAACTTTACTGCTTTCACCAGAAAACATGAATAACCTCCTT TATTTTTGGTGGCTCAACATCATTGTCTTTTTTATAAATTTACAACATTTAACATTTACTTGCTTGATAAGCTACTGTCG AGAGGTATAACATCCCTTTCCTACATAAAGAGTTTTATTTTCTTTCTTCTGTGATGAAATTCTGATATTGACATGTAACT TGATGACTCTGTATGGTGTGTTATAATTCAAAATTCCTGAGCTGGATATTTATTTACTTTGAAGTCTTCTGTCTGTTACT GTTGTACAGTTCTGTAATAGAAAGTTAAACTAATATTCAACGCACGCTTGATCTCGGAAAAAGTTCATTCACATGTCTAT TGCTGCTAAATGTTTTTTTGCTGTACGGTTTAGTGGAACCCAACCAATGATAAGTTTATGCCATAAGCCTATAACCATGG TTTAGTTGTTTCTATATTCATGTGTGGCATAAAAAAAAATTAAAATTGGAGTCCTTGGTCACATAATGCTTATGGGCTTA TGGTATAAAACTATCATCTGTACACAATTTTAAAATTTGTAAACAACTCTAATTCAGTGCATTTTTATCTTCTGGCAGAA AGCGAAAGCATTTGCCTATTTAGTTTTTCCAAACACAAATATTTCAGTGCTACCAGAGGGGTCATCGCAGGGGGGCAGCG AGCCCATGGCACATGGAATCATCACCTCTGTTACACAGGGTGCTATGTCAGGTATTCTCCCACACTTCCTCTGTTGTTTT CCTAGCTAGTTGTTCCTTCAATAGGAATGTTGGTGCTAAGTGTTATGTGCGATTCTATTCCCCCTAGCATTGGCCTAGTA ATTTAGACATGATTTCATAGAATGTGCTTGTGTAGGTCTAATTAGTTTTCTGTTTAATTTTCTTATAGTGGATGATTATC TTCGTTGCCTAGAACGAGGGCGTGCTACTAGTGAAAGATTGTCTGAATTTTTAAGGAAGAACATTGAGCCAAAATCTACC AGTGAGGCATCTAAAGCTGGGTGATTTCTAATCATTTTGGATGTAGTTTACTTGTATCTTATTTTCCCTTGCAAAGGCTT GGCTGCATGGGATTTCAAAGTATGGTAGTGTTACATATTTGCTCTAACCTGCTTGCTTCAACAGTAATGTCTTCCATGAA ATTGCCAATTTTAATGATTAAGATAAAGATTCTATTTATCTGATTGTAAAATTGCCAATTGCAAACTTGTCTTTTCTGGT ATCTTGGTTAGTTCCATATTAGTTGTCCTTTTATTTCTGCAAGTGGATATTTTAGGAACCATTCTCGTTTAAATTTAAGC AAAAAGATTTACCGTGTAGTCCTCTCAAAGAATGATTCGAATCATTTGTATAACCATTCTCTTATACCATTGATGCATTG GGGATTTTTTGATGCAAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0171400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGATTGATAGGGCTGATGGGAGGAGTCCCAATCAACTAAGGCCCCTGGCATGCTCTCGTTCCGTCCTTCACAGAGC CCACGGCTCAGCCTCCTGGGCTCAAGGAGAAACTAAAGTCTTTGCTGCAGTTTACGGACCCAAAGCTGGAACCAAGAAGA ATGAAAACCCTGAAAAAGCTTCCATTGAAGTTACTTGGAAGCCTAACACAGGACAGATTGGTCAAGTGGAGAAGGAGTAT GAGATGATATTGAAGAGAACCTTGGAAAGCATATGCATTCGAAGCATATATCCCAACACCACCACTTCCGTTATAGTCCA GGTTGTCCATGACGATGGTGCTCTTCTTCCATGTGCAATTAATGCAGCATGCGCTGCACTTGTTGATGCTGGAATCCCCC TAAGACATCTTGCTGTTGCAATATGTTGTTCTGTAGCAGATAATAGTTGTATTATACTCGACCCGACTAAACAAGAAGAG GAGAAAGCGAAAGCATTTGCCTATTTAGTTTTTCCAAACACAAATATTTCAGTGCTACCAGAGGGGTCATCGCAGGGGGG CAGCGAGCCCATGGCACATGGAATCATCACCTCTGTTACACAGGGTGCTATGTCAGTGGATGATTATCTTCGTTGCCTAG AACGAGGGCGTGCTACTAGTGAAAGATTGTCTGAATTTTTAAGGAAGAACATTGAGCCAAAATCTACCAGTGAGGCATCT AAAGCTGGGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0171400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEIDRADGRSPNQLRPLACSRSVLHRAHGSASWAQGETKVFAAVYGPKAGTKKNENPEKASIEVTWKPNTGQIGQVEKEY EMILKRTLESICIRSIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLRHLAVAICCSVADNSCIILDPTKQEE EKAKAFAYLVFPNTNISVLPEGSSQGGSEPMAHGIITSVTQGAMSVDDYLRCLERGRATSERLSEFLRKNIEPKSTSEAS KAG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.230.70
1 241 241 1.5E-69
IPR027408
PANTHER
PTHR11953:SF1
5 237 233 9.8E-98 –
PANTHER
PTHR11953
5 237 233 9.8E-98 –
SUPERFAMILY
SSF54211
11 132 122 8.6E-32
IPR020568
Pfam
PF01138
13 133 121 1.7E-23
IPR001247
CDD
cd11372
14 228 215 6.98896E-83 –
SUPERFAMILY
SSF55666
133 233 101 4.23E-14
IPR036345

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0171400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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