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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR020568
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 224 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 6.198s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0061699.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Glycine max] gi|356563427|ref|XP_003549964.1| chr0 20680891 20689343 -
2 domain predictions
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Lj0g3v0107659.1
n.a. PREDICTED: exosome complex component RRP42-like [Cicer arietinum] gi|502123817|ref|XP_004498271.1| chr0 46446056 46447709 -
2 domain predictions
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Lj0g3v0155879.1
n.a. PREDICTED: DNA mismatch repair protein Mlh1-like [Glycine max] gi|356507690|ref|XP_003522597.1| chr0 73063632 73065132 -
2 domain predictions
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Lj0g3v0183909.1
n.a. PREDICTED: lon protease homolog 1, mitochondrial-like [Glycine max] gi|356533540|ref|XP_003535321.1| chr0 89371038 89383274 +
2 domain predictions
 –
Lj0g3v0208599.1
n.a. PREDICTED: heat shock protein 83-like [Glycine max] gi|356530818|ref|XP_003533977.1| chr0 104590564 104593941 +
2 domain predictions
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Lj0g3v0216279.1
n.a. PREDICTED: probable UDP-3-O-[3]-hydroxymyristoyl] gi|502123766|ref|XP_004498250.1| chr0 109824437 109829942 +
2 domain predictions
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Lj0g3v0270919.1
n.a. PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| chr0 140309870 140314217 +
2 domain predictions
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Lj0g3v0273479.1
n.a. PREDICTED: exosome complex component RRP43-like [Glycine max] gi|356526509|ref|XP_003531860.1| chr0 141750376 141756140 -
2 domain predictions
 –
Lj0g3v0300669.1
n.a. PREDICTED: exosome complex component MTR3-like [Cicer arietinum] gi|502145425|ref|XP_004506024.1| chr0 156244291 156247191 +
2 domain predictions
 –
Lj0g3v0335759.1
n.a. PREDICTED: L-arabinokinase-like [Cicer arietinum] gi|502124500|ref|XP_004498554.1| chr0 175911389 175926316 +
2 domain predictions
 –
Lj0g3v0335759.2
n.a. PREDICTED: L-arabinokinase-like [Cicer arietinum] gi|502124500|ref|XP_004498554.1| chr0 175920710 175926316 +
2 domain predictions
 –
Lj0g3v0341909.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Cicer arietinum] gi|502166590|ref|XP_004513932.1| chr0 179235132 179238892 -
2 domain predictions
 –
Lj0g3v0341919.1
n.a. PREDICTED: elongation factor G, mitochondrial-like [Glycine max] gi|356541316|ref|XP_003539124.1| chr0 179240705 179246839 -
2 domain predictions
 –
Lj0g3v0357339.1
n.a. PREDICTED: galactokinase-like [Glycine max] gi|356565073|ref|XP_003550769.1| chr0 188139972 188145393 -
2 domain predictions
 –
Lj1g3v0415020.1
n.a. PREDICTED: exosome complex exonuclease RRP46 homolog isoform X1 [Cicer arietinum] gi|502105061|ref|XP_004492714.1| chr1 5105814 5106892 +
2 domain predictions
 –
Lj1g3v0968900.1
n.a. PREDICTED: probable phosphomevalonate kinase-like [Cicer arietinum] gi|502136293|ref|XP_004502634.1| chr1 12265072 12272398 -
2 domain predictions
 –
Lj1g3v1353680.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr1 16105759 16110082 +
2 domain predictions
 –
Lj1g3v2631940.1
n.a. PREDICTED: exosome complex exonuclease RRP46 homolog isoform X1 [Cicer arietinum] gi|502105061|ref|XP_004492714.1| chr1 30794518 30798666 +
2 domain predictions
 –
Lj1g3v2631940.2
n.a. PREDICTED: exosome complex exonuclease RRP46 homolog isoform X1 [Cicer arietinum] gi|502105061|ref|XP_004492714.1| chr1 30794518 30798666 +
2 domain predictions
 –
Lj1g3v3975720.1
n.a. PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1| chr1 46969692 46976329 -
2 domain predictions
 –
Lj1g3v3979350.2
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47317513 -
2 domain predictions
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Lj1g3v4047220.1
n.a. n.a. chr1 47750328 47759989 -
2 domain predictions
 –
Lj1g3v4647640.1
n.a. n.a. chr1 55242751 55247465 -
2 domain predictions
 –
Lj1g3v4694270.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr1 55813384 55814557 +
2 domain predictions
 –
Lj1g3v4753360.1
n.a. PREDICTED: exosome complex component RRP45-like isoform X3 [Cicer arietinum] gi|502122025|ref|XP_004497542.1| chr1 57027597 57032777 -
2 domain predictions
 –
Lj1g3v4942840.1
n.a. PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| chr1 60098524 60099386 -
2 domain predictions
 –
Lj1g3v4943880.1
n.a. PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| chr1 60108917 60112380 -
2 domain predictions
 –
Lj1g3v5038190.1
n.a. PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Cicer arietinum] gi|502114036|ref|XP_004494840.1| chr1 61684219 61700719 -
2 domain predictions
 –
Lj2g3v0156840.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr2 2819462 2821529 +
2 domain predictions
 –
Lj2g3v0561300.1
n.a. Exosome complex exonuclease RRP46 [Medicago truncatula] gi|357507241|ref|XP_003623909.1| chr2 7563774 7568229 -
2 domain predictions
 –
Lj2g3v0920490.1
n.a. PREDICTED: glucuronokinase 1-like [Cicer arietinum] gi|502090342|ref|XP_004489197.1| chr2 14627159 14630772 +
2 domain predictions
 –
Lj2g3v0947360.1
n.a. PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum] gi|502090489|ref|XP_004489245.1| chr2 15051767 15062803 -
2 domain predictions
 –
Lj2g3v1203440.1
n.a. PREDICTED: heat shock protein 83-like [Glycine max] gi|356499958|ref|XP_003518802.1| chr2 19348503 19358869 -
2 domain predictions
 –
Lj2g3v1203440.2
n.a. PREDICTED: heat shock protein 83-like [Glycine max] gi|356499958|ref|XP_003518802.1| chr2 19350178 19358869 -
2 domain predictions
 –
Lj2g3v1988690.1
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Cicer arietinum] gi|502160472|ref|XP_004511756.1| chr2 29475390 29484392 -
2 domain predictions
 –
Lj2g3v1988690.2
n.a. PREDICTED: lon protease homolog 2, peroxisomal-like [Cicer arietinum] gi|502160472|ref|XP_004511756.1| chr2 29475390 29483748 -
2 domain predictions
 –
Lj2g3v3318780.1
n.a. PREDICTED: heat shock cognate protein 80-like [Vitis vinifera] gi|359495606|ref|XP_003635036.1| chr2 41919540 41922631 -
2 domain predictions
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Lj2g3v3337750.1
n.a. Heat-shock protein [Medicago truncatula] gi|357495325|ref|XP_003617951.1| chr2 42415238 42420314 +
2 domain predictions
 –
Lj2g3v3337750.2
n.a. Heat-shock protein [Medicago truncatula] gi|357495325|ref|XP_003617951.1| chr2 42421269 42426448 +
2 domain predictions
 –
Lj2g3v3337750.3
n.a. Heat-shock protein [Medicago truncatula] gi|357495325|ref|XP_003617951.1| chr2 42421269 42425915 +
2 domain predictions
 –
Lj2g3v3413250.1
n.a. homoserine kinase-like [Glycine max] gi|359807161|ref|NP_001241610.1| chr2 43126563 43129195 +
2 domain predictions
 –
Lj3g3v0139450.1
n.a. 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1| chr3 1048060 1052549 -
2 domain predictions
 –
Lj3g3v0290230.1
n.a. PREDICTED: DNA repair protein RadA homolog [Cicer arietinum] gi|502081182|ref|XP_004486791.1| chr3 1908311 1919580 -
2 domain predictions
 –
Lj3g3v0965560.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 12666294 12670036 +
2 domain predictions
 –
Lj3g3v0965570.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451779|ref|XP_003596166.1| chr3 12667005 12670366 +
2 domain predictions
 –
Lj3g3v1957990.1
n.a. PREDICTED: DNA mismatch repair protein MLH1-like [Cicer arietinum] gi|502127149|ref|XP_004499581.1| chr3 25292324 25303721 -
2 domain predictions
 –
Lj3g3v2315550.1
n.a. Elongation factor EF-2 [Medicago truncatula] gi|357451821|ref|XP_003596187.1| chr3 28433062 28438042 -
2 domain predictions
 –
Lj3g3v2316610.1
n.a. PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| chr3 28482403 28485647 -
2 domain predictions
 –
Lj3g3v2318330.3
n.a. DNA repair protein radA-like protein [Medicago truncatula] gi|357513543|ref|XP_003627060.1| chr3 28901488 28908744 -
2 domain predictions
 –
Lj3g3v2318330.4
n.a. DNA repair protein radA-like protein [Medicago truncatula] gi|357513543|ref|XP_003627060.1| chr3 28901488 28908744 -
2 domain predictions
 –