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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0171900 |
| Transcript ID | LotjaGi2g1v0171900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0171900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58758072..58762185) extracted from Lotus japonicus Gifu genome v1.2.
AAGCGCATAAACACAAGAGGGATGCAGCAGCCAAAGCAGGAGCAGTAAGATTCACTTGTAAATTTTGGATTATCTAAGAA GCAAGGATGGGCGATTTGATAAGCACCTTACCGGAGGAACTGATATGCCACATACTCTCTTTTCTCCCAACCCTGGAAGC AGTTCGCACTTGCGTCCTCTCCAAGAGATGGAAGACACTGTGGCGTTCAGTTCTCACTCTCTACTTCGACGACTCTCTTA CATATAAAAAAGAGGAACATGCTCGTTTTGTTCAGTCCGTGTCTGCAGCCATCTTCTCCCAAGATCAACGTCAACCTATC CACAAATTTCGCCTCAAGACTTACTCTAATCCTGCCACTGTCACTGTTTGGGTTCATGCTGCTGTGCAACTTAGAGTTCA ACACCTCGATCTCTCCCTCTCTTCTCAGTATGTTCAACACCCACCTAACTTGTCTTCCATCTTCACTTGCAAAACTCTCC TGGTTCTTAAGTTGCAGGGCACCAAGTTGGAACCTATTTCCTCTGTTGATTTACCTTTCCTTAAACACCTCCATCTACAA GATTTGAGGTTCTCAAAACGTGCATGTCTCGCCGAGCTTCTTTCTGGATGTCCACTTCTTGAGGATTTTAAAGCAAAACG TTTAGATTTTCATGAAGATGTCACTGACAGAGAGTTTAAGACCTTACCCAACTTGCTCAGAGCAAAAATTTCTGCCAGAA CTGATGTTTTTTTGCTTGGAGTGGTTAGCAATGTCAAGTTTTTGCACATAGATGAGGTAATTTGATTTATGCTTTATGAA TCATTATATTTTCATTCCTATTCGACATGAGATATTTGATAAATTGTTATTGTAACTCATGCAGATTTTCTTTAGGTTTG GTGAAGGCACAAGACCCTATATTTTCCCTATGTTTCACAATTTAACCCATCTTGAGCTTGAATATAGATGTTATAATGAT AATTGGTCTCAGGTGGTGGAATTGCTCCAGCATTGCCCCAAGCTTCAAGTTCTTGTCACTAACCAGGTTTCATTAAAGGC TTAGAATGATTTCTATTTTTTGACACTTCTTCACTTGTTTTCATTTATTTATTTTGTGTTTATTCGTAATAGCCATATTT TCATCAGACTAAGATGAATGGAATCAATGAAGAAGTAGGTGATTGGCAATATCGACGATCAGATCCTGAATGCATTTTGT TACACCTTAAAAGATGCTATCTAAATGATTATAGAGGCACTAGCGGTGAGTTTCAATTTGCAACATATATAATGGGGAAT GGAAGAGTTTTAGAGAAGATGAGAATACGCGGTGGCTTTAGCGTAAATCAACTGGAAGAGCCTAAGTTGTTTAAAGAATT ATCCTCATGCACGAGGTGCTCAACAACTTGTAAGCTTTCCTTTGAAGGGGAAAGAGATTTGAGGGAAATCTAACAAAGGA AGAGAAATGTGGGACGTCAAGTGAGGACCGCGTGGAAGTGATAGCAAACTAGATTTGTTAGCTACAAGTAGTTTCTCCCT TTTTTTCCTTTTAACTATTAGTTAGCTACAAGGATATGGATCTTGTCTTGATTTTCAAGTTAGTCAAAAGTTCTTCACTG ATGGTTCATTGTAGATTTGAGATATAGTGCGCAAGTGTGAGGCAACTCTACGTCAAATTCTGATCTTATGCGAACCTCAA TTGTAGGTATGTGTAAATTTTCTCTCAAACAGGAGCAGCACATGCCCAAAAATATAATATTTAGTTGTTTGTTCAAGAAG AACTCTCTTGTTTTGTGATAGTATGATTTTTTTCTTTTGTGTATCATTGTAGTAGCAGAATATGGTAAAAAATTAAATTT CTACACTTATCTAGCTTGCAATTGACATATGTGCAACCAGCTTTTCTGTTGCTCGGTTAATGAACAACCAAGGGTACAGA GGGATAGAGTAATGGTTATGCAGCTATTGCATATTTTGGGAGATAAAAAGTGGTTTAGTCTGTCCTTCACCTTAATGGAG AAGGAAAAAGTCTGTATTTCACTCTTAGTGGTATCTTGAAATCTTGAATTAAAAGTTTTTTTCTTTCTTTCTATTATTTC TTTGAGTTTTGGTTGGGTATTAAGTTGCTTGGTTTATGAGATTTTAGGGTAGGTAAGTTGCTTTCTCTTTATTTGAGCAA TTGGAACATTGGAAGGCTTTGTTGGGAGAGCCATGGGAAGGCACATGAAGATATATATTATATATACATAGGATTTGCTA AAATAATCCCACTAGACTTTATAAGAGAGTAAGTTAGCACTTAACACACTTTCTTTCTTTTAGACAAAAACATTATGTGT CTCATTCTTAAAAACAATTTCACCTATTGGGTAATAAGTAATTAAACTATCATTTTTTTTTCTTCTAAAATCTGCATATT TTTACTTCTCCCCCTTCACCTAGCCTTGCAACCAATTGTTACTGCTACATTTCCTATCTGCCTTATAATACCCACTTACA AGGAAGAACCATTATGACTTAGTGGTAAAAGCTAATGTTCCATCATCCATGTCTTCTTGTCATAAGGAATTCCAAGCCCA TTTTCTACATCCTAACCATGACAAACTCCCATCTGTTTTTCAGAAAGATCATTTTCTACATCCTACCCATTTTCTACACC CTAAACCCTAGATTAAAAAATTTCTGGATTTAGTTTGCTAACTTACTCCTTAAAAATAAGTGGGATTACATTAGCAACCC CTATACATAACACGTACACACACACACACACCCCAGAGCTTGTTCTAAGAGTGTATGACCTTGCAAATGTGCGTTCAATA CCTGATGTTTTTCTGAACATGCAAATGTCCTGCCCCTATTTTTGTAGCCAGATCTGCTTGTTCTTTGTTCAACTTTTACG AAGTATGAAATTTTGATTAGTCAGTCTGAAGTAGAAGTGTAGAACAGTGATTTTGGTGCTTTTCTGTTAGAGTAATTTTG CTTACATGAACAACTAATTAAGATCTTCTAAATGGTATGGATTAGAGTTTCATCTCTATTTTCTATGACTTGAAGGAGGT TTTCTAGTTTCTATAATTTCCTCAATTTTTTGAAGATCCACTTGCTTGACTAATTGGAATCAAGGCCTATGAGATTTGAT ACAGGGTAAGTTTCTTCTCATCAAATTGGAATCAGGTATAATGAAATTATTGAGATTGTTGTTCTAATGTCTATGTAGGA AAAGCAGAACAAGCTGAAGATCAATGAAATATTTTGATGCAGTATGCTTTTCTTCCTTGTCATATTTGATTTCTTTTCTT TCAGCAATGATATATTTTTCTGGGTATTCTTTCCTCATGAGCTTGTGCATGGAGAGGAGTTCACATGAGAATATGAGATA TGTCTAACTCTCTGTAATTGCATGTCAGTTACATGAGATATGCCTAACTCTGCTCTTGGTTAATTTTATGCAATGTGCTC TCTATCTTTTCTTTGTCGATTTCTATCAGACGGTCTGAATTGTTTTATTTATGCAAAATTTAAACTTCCTGATCTACTAT GTTTGCAGCAATTTAAGTATTCCTGATGCATGTTGAAACAATAATTTGTTGAGAACCCAAACTCACTGGTACAACAAAGA GTGAAAAGAAACAAACAGAAGGTAAATTGATTGCTTATTGATGGCAATTGGAATATTACAGAAAGAGAGTAGTTCCCCTG ATTCTGATCAGAGCTAAGCTCCTATAGGAAGCTCATAGCTTCCTACTCATTTCTATACCCTCAATAATCAAAGATAAACC TCTCAACCTCTCTCTTATTCCTTATAAGCATGGAACGATTACAATTAACGCTCAAACTCACTGGTACAACAAAGAGTGAA AAGAAACAAACAGAAGGTAAATTGATTGCTTATTGATGGCAATTGGAATATTACAGAAAGAGAGTAGTTCCCCTGATTCT GATCAGAGCTAAGCTCCTATAGGAAGCTCATAGCTTCCTACTCATTTCTATACCCTCAATAATCAAAGATAAACCTCTCA ACCTCTCTCTTATTCCTTATAAGCATGGAACGATTACAATTAACGCTCAATCACCAGCTGTAAGGTAGTTACAAAGTGTT TCCCTTTTTTCCCCTTCTAGAATACACTCTCCAT
CDS sequence (LotjaGi2g1v0171900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGATTTGATAAGCACCTTACCGGAGGAACTGATATGCCACATACTCTCTTTTCTCCCAACCCTGGAAGCAGTTCG CACTTGCGTCCTCTCCAAGAGATGGAAGACACTGTGGCGTTCAGTTCTCACTCTCTACTTCGACGACTCTCTTACATATA AAAAAGAGGAACATGCTCGTTTTGTTCAGTCCGTGTCTGCAGCCATCTTCTCCCAAGATCAACGTCAACCTATCCACAAA TTTCGCCTCAAGACTTACTCTAATCCTGCCACTGTCACTGTTTGGGTTCATGCTGCTGTGCAACTTAGAGTTCAACACCT CGATCTCTCCCTCTCTTCTCAGTATGTTCAACACCCACCTAACTTGTCTTCCATCTTCACTTGCAAAACTCTCCTGGTTC TTAAGTTGCAGGGCACCAAGTTGGAACCTATTTCCTCTGTTGATTTACCTTTCCTTAAACACCTCCATCTACAAGATTTG AGGTTCTCAAAACGTGCATGTCTCGCCGAGCTTCTTTCTGGATGTCCACTTCTTGAGGATTTTAAAGCAAAACGTTTAGA TTTTCATGAAGATGTCACTGACAGAGAGTTTAAGACCTTACCCAACTTGCTCAGAGCAAAAATTTCTGCCAGAACTGATG TTTTTTTGCTTGGAGTGGTTAGCAATGTCAAGTTTTTGCACATAGATGAGATTTTCTTTAGGTTTGGTGAAGGCACAAGA CCCTATATTTTCCCTATGTTTCACAATTTAACCCATCTTGAGCTTGAATATAGATGTTATAATGATAATTGGTCTCAGGT GGTGGAATTGCTCCAGCATTGCCCCAAGCTTCAAGTTCTTGTCACTAACCAGCCATATTTTCATCAGACTAAGATGAATG GAATCAATGAAGAAGTAGGTGATTGGCAATATCGACGATCAGATCCTGAATGCATTTTGTTACACCTTAAAAGATGCTAT CTAAATGATTATAGAGGCACTAGCGGTGAGTTTCAATTTGCAACATATATAATGGGGAATGGAAGAGTTTTAGAGAAGAT GAGAATACGCGGTGGCTTTAGCGTAAATCAACTGGAAGAGCCTAAGTTGTTTAAAGAATTATCCTCATGCACGAGGTGCT CAACAACTTGTAAGCTTTCCTTTGAAGGGGAAAGAGATTTGAGGGAAATCTAA
Protein sequence (LotjaGi2g1v0171900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDLISTLPEELICHILSFLPTLEAVRTCVLSKRWKTLWRSVLTLYFDDSLTYKKEEHARFVQSVSAAIFSQDQRQPIHK FRLKTYSNPATVTVWVHAAVQLRVQHLDLSLSSQYVQHPPNLSSIFTCKTLLVLKLQGTKLEPISSVDLPFLKHLHLQDL RFSKRACLAELLSGCPLLEDFKAKRLDFHEDVTDREFKTLPNLLRAKISARTDVFLLGVVSNVKFLHIDEIFFRFGEGTR PYIFPMFHNLTHLELEYRCYNDNWSQVVELLQHCPKLQVLVTNQPYFHQTKMNGINEEVGDWQYRRSDPECILLHLKRCY LNDYRGTSGEFQFATYIMGNGRVLEKMRIRGGFSVNQLEEPKLFKELSSCTRCSTTCKLSFEGERDLREI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 50 | 49 | 9.921 | ||
| SUPERFAMILY | 3 | 48 | 46 | 1.22E-12 | ||
| PANTHER | 3 | 375 | 373 | 4.2E-64 | – | |
| PANTHER | 3 | 375 | 373 | 4.2E-64 | – | |
| Gene3D | 4 | 301 | 298 | 9.0E-27 | ||
| Pfam | 5 | 41 | 37 | 2.6E-7 | ||
| SMART | 8 | 49 | 42 | 1.3E-5 | ||
| SUPERFAMILY | 101 | 280 | 180 | 2.24E-14 | – | |
| Pfam | 152 | 176 | 25 | 3.4E-4 | ||
| Pfam | 306 | 349 | 44 | 2.3E-12 | ||
| SMART | 310 | 382 | 73 | 1.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0171900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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