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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0171900 |
| Transcript ID | LotjaGi2g1v0171900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0171900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58758770..58762129) extracted from Lotus japonicus Gifu genome v1.2.
TGTAAATTTTGGATTATCTAAGAAGCAAGGATGGGCGATTTGATAAGCACCTTACCGGAGGAACTGATATGCCACATACT CTCTTTTCTCCCAACCCTGGAAGCAGTTCGCACTTGCGTCCTCTCCAAGAGATGGAAGACACTGTGGCGTTCAGTTCTCA CTCTCTACTTCGACGACTCTCTTACATATAAAAAAGAGGAACATGCTCGTTTTGTTCAGTCCGTGTCTGCAGCCATCTTC TCCCAAGATCAACGTCAACCTATCCACAAATTTCGCCTCAAGACTTACTCTAATCCTGCCACTGTCACTGTTTGGGTTCA TGCTGCTGTGCAACTTAGAGTTCAACACCTCGATCTCTCCCTCTCTTCTCAGTATGTTCAACACCCACCTAACTTGTCTT CCATCTTCACTTGCAAAACTCTCCTGGTTCTTAAGTTGCAGGGCACCAAGTTGGAACCTATTTCCTCTGTTGATTTACCT TTCCTTAAACACCTCCATCTACAAGATTTGAGGTTCTCAAAACGTGCATGTCTCGCCGAGCTTCTTTCTGGATGTCCACT TCTTGAGGATTTTAAAGCAAAACGTTTAGATTTTCATGAAGATGTCACTGACAGAGAGTTTAAGACCTTACCCAACTTGC TCAGAGCAAAAATTTCTGCCAGAACTGATGTTTTTTTGCTTGGAGTGGTTAGCAATGTCAAGTTTTTGCACATAGATGAG GTAATTTGATTTATGCTTTATGAATCATTATATTTTCATTCCTATTCGACATGAGATATTTGATAAATTGTTATTGTAAC TCATGCAGATTTTCTTTAGGTTTGGTGAAGGCACAAGACCCTATATTTTCCCTATGTTTCACAATTTAACCCATCTTGAG CTTGAATATAGATGTTATAATGATAATTGGTCTCAGGTGGTGGAATTGCTCCAGCATTGCCCCAAGCTTCAAGTTCTTGT CACTAACCAGGTTTCATTAAAGGCTTAGAATGATTTCTATTTTTTGACACTTCTTCACTTGTTTTCATTTATTTATTTTG TGTTTATTCGTAATAGCCATATTTTCATCAGACTAAGATGAATGGAATCAATGAAGAAGTAGGTGATTGGCAATATCGAC GATCAGATCCTGAATGCATTTTGTTACACCTTAAAAGATGCTATCTAAATGATTATAGAGGCACTAGCGGTGAGTTTCAA TTTGCAACATATATAATGGGGAATGGAAGAGTTTTAGAGAAGATGAGAATACGCGGTGGCTTTAGCGTAAATCAACTGGA AGAGCCTAAGTTGTTTAAAGAATTATCCTCATGCACGAGGTGCTCAACAACTTGTAAGCTTTCCTTTGAAGGGGAAAGAG ATTTGAGGGAAATCTAACAAAGGAAGAGAAATGTGGGACGTCAAGTGAGGACCGCGTGGAAGTGATAGCAAACTAGATTT GTTAGCTACAAGTAGTTTCTCCCTTTTTTTCCTTTTAACTATTAGTTAGCTACAAGGATATGGATCTTGTCTTGATTTTC AAGTTAGTCAAAAGTTCTTCACTGATGGTTCATTGTAGATTTGAGATATAGTGCGCAAGTGTGAGGCAACTCTACGTCAA ATTCTGATCTTATGCGAACCTCAATTGTAGGTATGTGTAAATTTTCTCTCAAACAGGAGCAGCACATGCCCAAAAATATA ATATTTAGTTGTTTGTTCAAGAAGAACTCTCTTGTTTTGTGATAGTATGATTTTTTTCTTTTGTGTATCATTGTAGTAGC AGAATATGGTAAAAAATTAAATTTCTACACTTATCTAGCTTGCAATTGACATATGTGCAACCAGCTTTTCTGTTGCTCGG TTAATGAACAACCAAGGGTACAGAGGGATAGAGTAATGGTTATGCAGCTATTGCATATTTTGGGAGATAAAAAGTGGTTT AGTCTGTCCTTCACCTTAATGGAGAAGGAAAAAGTCTGTATTTCACTCTTAGTGGTATCTTGAAATCTTGAATTAAAAGT TTTTTTCTTTCTTTCTATTATTTCTTTGAGTTTTGGTTGGGTATTAAGTTGCTTGGTTTATGAGATTTTAGGGTAGGTAA GTTGCTTTCTCTTTATTTGAGCAATTGGAACATTGGAAGGCTTTGTTGGGAGAGCCATGGGAAGGCACATGAAGATATAT ATTATATATACATAGGATTTGCTAAAATAATCCCACTAGACTTTATAAGAGAGTAAGTTAGCACTTAACACACTTTCTTT CTTTTAGACAAAAACATTATGTGTCTCATTCTTAAAAACAATTTCACCTATTGGGTAATAAGTAATTAAACTATCATTTT TTTTTCTTCTAAAATCTGCATATTTTTACTTCTCCCCCTTCACCTAGCCTTGCAACCAATTGTTACTGCTACATTTCCTA TCTGCCTTATAATACCCACTTACAAGGAAGAACCATTATGACTTAGTGGTAAAAGCTAATGTTCCATCATCCATGTCTTC TTGTCATAAGGAATTCCAAGCCCATTTTCTACATCCTAACCATGACAAACTCCCATCTGTTTTTCAGAAAGATCATTTTC TACATCCTACCCATTTTCTACACCCTAAACCCTAGATTAAAAAATTTCTGGATTTAGTTTGCTAACTTACTCCTTAAAAA TAAGTGGGATTACATTAGCAACCCCTATACATAACACGTACACACACACACACACCCCAGAGCTTGTTCTAAGAGTGTAT GACCTTGCAAATGTGCGTTCAATACCTGATGTTTTTCTGAACATGCAAATGTCCTGCCCCTATTTTTGTAGCCAGATCTG CTTGTTCTTTGTTCAACTTTTACGAAGTATGAAATTTTGATTAGTCAGTCTGAAGTAGAAGTGTAGAACAGTGATTTTGG TGCTTTTCTGTTAGAGTAATTTTGCTTACATGAACAACTAATTAAGATCTTCTAAATGGTATGGATTAGAGTTTCATCTC TATTTTCTATGACTTGAAGGAGGTTTTCTAGTTTCTATAATTTCCTCAATTTTTTGAAGATCCACTTGCTTGACTAATTG GAATCAAGGCCTATGAGATTTGATACAGGGTAAGTTTCTTCTCATCAAATTGGAATCAGGTATAATGAAATTATTGAGAT TGTTGTTCTAATGTCTATGTAGGAAAAGCAGAACAAGCTGAAGATCAATGAAATATTTTGATGCAGTATGCTTTTCTTCC TTGTCATATTTGATTTCTTTTCTTTCAGCAATGATATATTTTTCTGGGTATTCTTTCCTCATGAGCTTGTGCATGGAGAG GAGTTCACATGAGAATATGAGATATGTCTAACTCTCTGTAATTGCATGTCAGTTACATGAGATATGCCTAACTCTGCTCT
CDS sequence (LotjaGi2g1v0171900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGATTTGATAAGCACCTTACCGGAGGAACTGATATGCCACATACTCTCTTTTCTCCCAACCCTGGAAGCAGTTCG CACTTGCGTCCTCTCCAAGAGATGGAAGACACTGTGGCGTTCAGTTCTCACTCTCTACTTCGACGACTCTCTTACATATA AAAAAGAGGAACATGCTCGTTTTGTTCAGTCCGTGTCTGCAGCCATCTTCTCCCAAGATCAACGTCAACCTATCCACAAA TTTCGCCTCAAGACTTACTCTAATCCTGCCACTGTCACTGTTTGGGTTCATGCTGCTGTGCAACTTAGAGTTCAACACCT CGATCTCTCCCTCTCTTCTCAGTATGTTCAACACCCACCTAACTTGTCTTCCATCTTCACTTGCAAAACTCTCCTGGTTC TTAAGTTGCAGGGCACCAAGTTGGAACCTATTTCCTCTGTTGATTTACCTTTCCTTAAACACCTCCATCTACAAGATTTG AGGTTCTCAAAACGTGCATGTCTCGCCGAGCTTCTTTCTGGATGTCCACTTCTTGAGGATTTTAAAGCAAAACGTTTAGA TTTTCATGAAGATGTCACTGACAGAGAGTTTAAGACCTTACCCAACTTGCTCAGAGCAAAAATTTCTGCCAGAACTGATG TTTTTTTGCTTGGAGTGGTTAGCAATGTCAAGTTTTTGCACATAGATGAGATTTTCTTTAGGTTTGGTGAAGGCACAAGA CCCTATATTTTCCCTATGTTTCACAATTTAACCCATCTTGAGCTTGAATATAGATGTTATAATGATAATTGGTCTCAGGT GGTGGAATTGCTCCAGCATTGCCCCAAGCTTCAAGTTCTTGTCACTAACCAGACTAAGATGAATGGAATCAATGAAGAAG TAGGTGATTGGCAATATCGACGATCAGATCCTGAATGCATTTTGTTACACCTTAAAAGATGCTATCTAAATGATTATAGA GGCACTAGCGGTGAGTTTCAATTTGCAACATATATAATGGGGAATGGAAGAGTTTTAGAGAAGATGAGAATACGCGGTGG CTTTAGCGTAAATCAACTGGAAGAGCCTAAGTTGTTTAAAGAATTATCCTCATGCACGAGGTGCTCAACAACTTGTAAGC TTTCCTTTGAAGGGGAAAGAGATTTGAGGGAAATCTAA
Protein sequence (LotjaGi2g1v0171900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDLISTLPEELICHILSFLPTLEAVRTCVLSKRWKTLWRSVLTLYFDDSLTYKKEEHARFVQSVSAAIFSQDQRQPIHK FRLKTYSNPATVTVWVHAAVQLRVQHLDLSLSSQYVQHPPNLSSIFTCKTLLVLKLQGTKLEPISSVDLPFLKHLHLQDL RFSKRACLAELLSGCPLLEDFKAKRLDFHEDVTDREFKTLPNLLRAKISARTDVFLLGVVSNVKFLHIDEIFFRFGEGTR PYIFPMFHNLTHLELEYRCYNDNWSQVVELLQHCPKLQVLVTNQTKMNGINEEVGDWQYRRSDPECILLHLKRCYLNDYR GTSGEFQFATYIMGNGRVLEKMRIRGGFSVNQLEEPKLFKELSSCTRCSTTCKLSFEGERDLREI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 50 | 49 | 9.921 | ||
| SUPERFAMILY | 3 | 49 | 47 | 1.7E-12 | ||
| PANTHER | 3 | 370 | 368 | 9.2E-65 | – | |
| PANTHER | 3 | 370 | 368 | 9.2E-65 | – | |
| Gene3D | 4 | 375 | 372 | 1.8E-26 | ||
| Pfam | 5 | 41 | 37 | 2.6E-7 | ||
| SMART | 8 | 49 | 42 | 1.3E-5 | ||
| SUPERFAMILY | 101 | 280 | 180 | 1.26E-14 | – | |
| Pfam | 152 | 176 | 25 | 3.4E-4 | ||
| Pfam | 301 | 344 | 44 | 2.3E-12 | ||
| SMART | 305 | 377 | 73 | 1.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0171900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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