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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0172500 |
| Transcript ID | LotjaGi2g1v0172500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G10400.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0172500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58883168..58888124) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAAAGAGAATTCAGTGGCACATCAACACCGCCAAATACGCTTAGCGCCTGTTTGATACCTAGAAATCTAGAAATCCT TCTTCCCCAACTCCCGACCTAATTTCACAAACACACACAGACACAGTAAGGAAACCCATTACCCACATCAAAATCTGGAC AATTTATTAAGCTTTTCTATTCTTCTCCACAACATCTCACTGGTCCCTATTTCATTCCTTTCCCCCTTTCACCTTTTTTT TACATCATTATTCTCTTTGCAATGTTTTCTGTTTCTCCTCATTTTGTAAGATTCAGTTGCAGTGATTTTTGAATTTGCAT TCATCTTCAAATATGGTAGACAGAATTAGCATCTTACCAGATACAATCCTCAGTCACATTCTCTCATTTCTCTCAACAAA AGAAGCAGTTGCCACAAGCGTTCTCTCAAAAACATGGTACCCACAGTGGCGTTCAGTCTCCACTCTCGACTTCGAAGATC TCAACTATTCCCGATTTCTCCACTCGGTTTACAGAGTCATCCTCGCCAGAGATCACAACCAACCCATCCATAAATTCCGC CTCAGATTCATCGCTCGTCATGATATCGATGCTACTGATATCTACGTATGGGTTAATGCTGCGGTTCAACGCAGAGTTCA CCACCTTGAACTTTCCATCCTCTATCAATTTCACCTTACACGATTCATCAACTTGTCTGCCATTTTCACTTGCAGAACTC TTGTGATTCTCAAGCTGAATGGGTTGTTTTTGAAACCGTGTTCGTTTTCCAGTATTGATCTTCCCTTGGTTAAAGTTCTG CATCTAGAATGTGTGCCTTTCGCGGAACGGGGAGTTTTCGGCCAGCTTCTTTATGGATGTCCTGTTCTTGAGGATATCAA AACAAAGAGTATAGTTTTTATTAACCAAATCACTGATAGGAAGTTTGGAATTTTACCTAAGTTGGTCAGAGCAGATATTT CAATGTACAATACTAATTTTTTACTCGTGGAGGCGGTTAAAAATGTCGAGTTTTTGCGAATACATGAGGTATATATTGTG GTTTGTCCATATTTGTTTTTAATTTTTAAGGGAAATGTGATAGTTTGATTTCTTGCTATTGTAACTAATGCAGATGGAGC ATATGCACCACCGGCATGATGGCGGAGGTAAAGACCCCTTCGTTTTCCCAGAGTTTCCCAATTTGACCCATATTGAACTT ATCTACAACTGCTATGTTTATGACTGGTCGCAGGCGGTGGGGTTGCTCAAGCATTGTCCCAAACTTCAAGTTCTTGTCAT TAACCAGGTTTTCTTAGAGGCTTCTGATGATTTCTATTTGTTTTTTGTCATGTGTTCATTTATTCATTTTATGTTCGTTC TTAACAGTTACATATAGGTGAGGGACTCGAAGACAAGGAAGAATTAGTACGAGCTCGGAAATCCTTTCCATATGTCCGTA AATGCAATCTATTATGCCTTCAAAAGGTCTATCTAAATGACTATAGAGGCGGCAAAGGTGAGTTTCAATTTGCAAGATAT ATTATGCGGTATGGAAGATCTTTAGAGAGTATGACATTATGCAGCGATATTCCTGTAAATGAACAGGAAAAACTTAAGAT GTTAGAAAAATTATCCTCATGCACAAGGAGCTCTGCAACTTGTAAACTGTCCTTCAAGTGATTACAAACTATACTTGATA GGTGCAAGCAGTTTCTTCATTTCTTCCTTTAACTAGTAGCTAGGCATAAGGATATGGTGCTTGTCTTAATTTCGAAATTA GTCGAACTTGTTCTTTATTGATGGCTGGTTGTAAATTTGAGATACATTGCTCAAGTCAAGTGTGAGGAACCTGTATGTTT AATTCTGATCTTATGTGAACCTCCATGGTAGGTATTTGTAAATTCTCTCTCAGACAGGAGCATCATATGGAAACTATAAC ATTTAGTTGTTTGTACAAAAAGAACTCTCCGTTGTCTTTTGAGAGTATGATTTTTTTTCTTTCTGGCGTATCAATGTAGT AGCAGAATATGGTCAAAAATTAAATTTTTACCTAAGAAGATTGTATCATTTAAATACAAAAGGGTTATGACTTCTTCCAA ATTACTACTAATATGCATTATGTGGATCATTGAAATCTATATTTAGCATTATGAAACAAAAGTTTCATAGCAAGGCTGAA TCCTAACAGCTTACCAGAGCAAGCTTGCAATTGACATTTGTGCATCCCGGAACCAGCTTTTCTGCTGCTTGGTTAAAGAA CAGCCAAGTGTACAAAGGAGTAGAGTAATGGTTATGTAGCTATTGCATTTTTGGGAGATAAAAGTGGTGTTAGTCTGTCC TTCACTTTAATGGTTAAGGAAAAAAGTCAGTTTTTCACTCTTCGTGGTATTTTGAATTAAGTTTTTCATTTTATTAAAGC AGTTTTTTTCTATTATTTTTTTGAGTTTGTGTGGTATCAAATTGCTTGGTTCATGAGATCTTAGGCTAGGTAAGTTCCTT TCTCCTTATATGAGTAATTAGAACATTGTGGAAGAGTTTGTTCAGAAAGGCAAAATCCACTTCTATGCTTTTCATGCCTC CAAATTGAATAGTCTCTGGCTGTTAACAGTTTTCTGGATTTAATTTGCAACCTACTCCTTAAAAATAAGTGAGATTATGT TAGCAACCCCTATACATAACATAACACACACACACCCTAGAGCTTGTTCTAAGAGTGTACAATGATGCTTGTCTGAACAT GCAAATGTCCTGCTCCCATTCTTTAACCTTGTTCTGTTTGGACTTTGTTCAACTTTTATGATGTGTGAAATTTTGAGTAA GCATCTGATACTTCAATTAGTAGAACATTGATTTTGGTGACTTTCTACTAGAGTAATTTTGCTAATTAAGATTTTCTAAA TAGTATATTATGGAGTTTCAGCCCCATTTTCTATGATTTGAAGGAGATTTTGTAGTTTCTATAACTTCTTATATTTTTTT AAGATCCACTTAATTGCTTCAATAGTTGGAATCAAGGCCTATGAGATTTGATACATGGTTAGTTTCTTCTCATCAAATTT GAATCAAGTATAGTGAAATAGTTGAGATTGTTTGGCTTATGTGCATGCAGGAAAAGCAGAACAAGGCGAAGATCAATAAA ATATTGGCAACGACTACAGTACACAAGCTATCAAATACACGAGCGAAAATCATCGTTGGATATAATAATTTAATAAATGA ACGGCTGTGATCCATTACCGGGTACTAGCCATGTGTGTTTCACTTTTAATTGCTATATCCTCCTCCGGAATTAAATAAAT TGCAAAAGAAGGCTCCTACATAATTGCTATAGTAGGCCCATGTGAAATTGCAAATTGCCCTTTATTGTAACGGAACAGCC CCATCAAACAACCACCATCCTTTCCCTTCTTCATTATTCGTTATCCCACCTGCAACTTAAGTTGGGTGAGCTCGACATCA ACTGATTTTGTTCCAAATATTCATTTCAATGAACCCAGATCATGATGCACGCATCAAATCATGATGCATGTATGAACCCA GATCATGATTTGTGAATCAACCTAGAACCCAGAAACCCATAATCAACCGATTTTGTTTCCTCTGGTTGGACCTCTGTGAA ATGGGGTGAGGGTGAGCTCGAAATCAACCCAGATGGTTTCCAGACATTCGATTGAAGTGACGACACCTGATGCATGAATC AAGTTCGGTGGCTAGATCCTCTAGCTGGACCTCGCTGAAAATTCGTCAAAAAGGATTCATGACATGGAAAGAGATGTTTG AAAACTTGACAACAGGTTCTTATCCCATTTCTTAATATTTCGATTTATGGTTTTTCCCTTAATTTGAGCATGATGAATGC AATGGAATGTGCCTAAATTTTGCCTTGGTTTGAGCATGATGAAAATTGAATGCCTAAATTGTCCCTTAGTTAAAGCATGA TGAATGCAATTGAATGCCTAAATTTTCCCTTAGTTTGAGTATGATGAATGCAATGGAATGACTAATTGGTAGTATGAGTT GCAAGATAAAGTCTAGTATGGGGTTGGTGATGCAAGATAAAATTTCCCTTGTTTTCAATGCCTTTTAGGCATGCCTTTTA ATGCAATGTAGTTAAGTCAATTTGCTTGAATCATGTGGTGCTTGATACTCCTTGATGTATTGGTAAATTTCGATCCACAA ATCAATTTTCTCGACCAAATCTGGTATTGAATTGACATGTTTAGTTATGATGGTCATATGTTGATGTTGTTGTCCAAATG TGAGAGTTCATTAGCTTAGTACCAAATGTGAGAGATTGGCTGCCCAAAATTAGCCATCCTCCTAATTCAATATTGTACAA GTGATAGTGTCCCATAGGAGCATGTGATTTGAAACCAAGAACCTCCTATAGTTAAAAGCAATGCAATAGCTTAGTACAGC CCCACTACAACAGCAAAAAGACCCTTTCCTACAAAATAAATGCCCAGATTACATGGATCTAAAAGATTGGGCATTATCTA ATTTAATCAGCTCTTAATTGGTCTAAATAAGAAAAGGGCCAAGAACACATTGGGCCACTTAGGACATAAAAGACAACACA AATGCTAAGTACACATTGGGCCAACTACATAAAAGACATAGACATACACAAAACAGTGAGCCAACTACATAAAAGACAAT CACATTTTGGTGTTGCAATAGGATTCAACCTTCATCTGCAATTCTACTCTGCATTGGTTGTGTAGTCCTTGCAACAAGCT CATGCAAATCTTCATGCGAACTGAATCTTGTGTTTAATGCTATTTTTTTAAGTCTTCTTTACATATGTATATAGATAGAT AGATATAAATTTTTTATTTTAAGAGTATTTTATCTTAATTATTTATTAATAAATATTATTTTATTATTAATTTAATTTTT TAATATTTGTCAAATGCAAAGCTAAAGTCAATTTTAAGTTTATGAATGTTGTTTTTTTCAAAAAAAAAAAGTTTATG
CDS sequence (LotjaGi2g1v0172500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGACAGAATTAGCATCTTACCAGATACAATCCTCAGTCACATTCTCTCATTTCTCTCAACAAAAGAAGCAGTTGC CACAAGCGTTCTCTCAAAAACATGGTACCCACAGTGGCGTTCAGTCTCCACTCTCGACTTCGAAGATCTCAACTATTCCC GATTTCTCCACTCGGTTTACAGAGTCATCCTCGCCAGAGATCACAACCAACCCATCCATAAATTCCGCCTCAGATTCATC GCTCGTCATGATATCGATGCTACTGATATCTACGTATGGGTTAATGCTGCGGTTCAACGCAGAGTTCACCACCTTGAACT TTCCATCCTCTATCAATTTCACCTTACACGATTCATCAACTTGTCTGCCATTTTCACTTGCAGAACTCTTGTGATTCTCA AGCTGAATGGGTTGTTTTTGAAACCGTGTTCGTTTTCCAGTATTGATCTTCCCTTGGTTAAAGTTCTGCATCTAGAATGT GTGCCTTTCGCGGAACGGGGAGTTTTCGGCCAGCTTCTTTATGGATGTCCTGTTCTTGAGGATATCAAAACAAAGAGTAT AGTTTTTATTAACCAAATCACTGATAGGAAGTTTGGAATTTTACCTAAGTTGGTCAGAGCAGATATTTCAATGTACAATA CTAATTTTTTACTCGTGGAGGCGGTTAAAAATGTCGAGTTTTTGCGAATACATGAGATGGAGCATATGCACCACCGGCAT GATGGCGGAGGTAAAGACCCCTTCGTTTTCCCAGAGTTTCCCAATTTGACCCATATTGAACTTATCTACAACTGCTATGT TTATGACTGGTCGCAGGCGGTGGGGTTGCTCAAGCATTGTCCCAAACTTCAAGTTCTTGTCATTAACCAGTTACATATAG GTGAGGGACTCGAAGACAAGGAAGAATTAGTACGAGCTCGGAAATCCTTTCCATATGTCCGTAAATGCAATCTATTATGC CTTCAAAAGGTCTATCTAAATGACTATAGAGGCGGCAAAGGTGAGTTTCAATTTGCAAGATATATTATGCGGTATGGAAG ATCTTTAGAGAGTATGACATTATGCAGCGATATTCCTGTAAATGAACAGGAAAAACTTAAGATGTTAGAAAAATTATCCT CATGCACAAGGAGCTCTGCAACTTGTAAACTGTCCTTCAAGTGA
Protein sequence (LotjaGi2g1v0172500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDRISILPDTILSHILSFLSTKEAVATSVLSKTWYPQWRSVSTLDFEDLNYSRFLHSVYRVILARDHNQPIHKFRLRFI ARHDIDATDIYVWVNAAVQRRVHHLELSILYQFHLTRFINLSAIFTCRTLVILKLNGLFLKPCSFSSIDLPLVKVLHLEC VPFAERGVFGQLLYGCPVLEDIKTKSIVFINQITDRKFGILPKLVRADISMYNTNFLLVEAVKNVEFLRIHEMEHMHHRH DGGGKDPFVFPEFPNLTHIELIYNCYVYDWSQAVGLLKHCPKLQVLVINQLHIGEGLEDKEELVRARKSFPYVRKCNLLC LQKVYLNDYRGGKGEFQFARYIMRYGRSLESMTLCSDIPVNEQEKLKMLEKLSSCTRSSATCKLSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 55 | 54 | 8.65 | ||
| PANTHER | 3 | 380 | 378 | 2.2E-62 | – | |
| PANTHER | 3 | 380 | 378 | 2.2E-62 | – | |
| Gene3D | 3 | 311 | 309 | 1.4E-24 | ||
| SUPERFAMILY | 3 | 48 | 46 | 6.93E-11 | ||
| Pfam | 4 | 36 | 33 | 5.0E-6 | ||
| SUPERFAMILY | 105 | 292 | 188 | 6.2E-11 | – | |
| Pfam | 313 | 354 | 42 | 5.7E-7 | ||
| SMART | 315 | 387 | 73 | 7.1E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0172500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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