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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0172800 |
| Transcript ID | LotjaGi2g1v0172800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G62970.1 Protein with RNI-like/FBD-like domain; Swiss-Prot: sp|Q9FM55|FDL41_ARATH Putative F-box/FBD/LRR-repeat protein At5g62970; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0172800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58941033..58944819) extracted from Lotus japonicus Gifu genome v1.2.
CTACCAAAAAAGATAAAACCATTTTGTTTAACCAGAAACAAAAAGGGCCCATTACTCAGCCTATTTGTGAGAGGGAGGGA AGAGCACTCAAACTTCCCTCAATTGAGTAGTCCCTCAAACACGTTAGGGTTTATCTCCTCCACTCCTAGCAACCGCTACG AAACCCTCAAACTTCCCCAACACTCAGCGGTTGAGAGAGAACAACCTGAGTTTCTCTTCAATGGAAACCAGAACAACGAA CCTGTAAGATTCAATTCATTGATTTGTGAATTTGCATTCATCTAAGATAACACGGGCGATAGGATCAGCACCTTACCAGA CCCAATCCTCTGTCACATACTCTCCTTTCTCCCAACCAAGCAAACCGTTGCCACAAGTGTTCTCTCCAAGAGGTGGAAGC CACTGTGGCGTTCAGTTCCCGTTCTCGACTTCGATGACGAAGAACCCGATGATATCGGAACCTATTTCCTATTTGTTCAA TCGGTTTATGCAGTCATCGTCTCCCTAGATCTCCACCAACCTATCCATAGATTCCGACTCTCTTGTCTCTCTGATAATTT TTACGATCCTTACAATGTCACCATTTGGGTGAATGCTGCCGTGCAACGCAGAGTTCAGCACATCGAACTCTGCGTCTATC CGCCGTGTCTTCAACCATCTCCCAACTTGTCCTCCATCTTCACTTGCAGTACTCTTATGGTTCTCAAGTTGCAGGGGATG AAATTGGAAGGTCTTCCCTCGGCGGTTGATCTTCCCTTGCTTAAAGTCCTGCATTTAGAAGATTTGACTATCTCAGAATT CAAGTCTCTCGCTGAGCTTCTTTCGGGATGTCCGAATCTCGAGGACCTCAAAACAATGGGTTTGTTTATTACTTGTTATG AGTCTTACAGAGAGATTAAAACCTTGCCTAAGTTGGTCAGAGCAGATGTTTCATTGGAAAGTACATATGTTTTGTTCAGA GATGTGGTTGAGAATGTCAAGTTCTTGCGCTTAGATGAGGTGATAATTTGTTGTTTACTTGTTCATTCATTTTCATTTTT AAGGAAAATGTGGGAGAAACTTGATTTCTTGTTATTGTAACTCATGCAGATTTATGATGTAGTCCTCAATGAGAGTGCGC GCCAATACCCTGACTTTATCCCCATGTTTCACAATTTAACCCGTATTGAGCTTGACTATTGCAAATTTAATAGTGATTGT TCTGAGGTGGTGGAATTGCTCAATCATTGCCCCAAGCTTCAAGATCTTGTCATTGACCAGGTTTTCTTAGAGGCTTAGGA TGATTTTTATTTTTTATCACTTCATCACATTATTTATTTGTTTATTCATTTTGTGTTTGATTTTAACAGCCAAATGTTGA GTCTGATCTATTTGAAGAACCTTTGCAATACCCATCGTCTGTTCCTGAATGCATTCTATCACACCTTCAAAGATGCTATA TTAATTGTTATAGAGGCACCAAAGGTGAGTTTCGATTTGCAAAATATATAATGGAGAATGGAAGATTTTTAAAGAGGATG ACAATATCAAGTGGCATTGCCAGAAATCCACAGAGAAAACGTAAGATGTTAAAAGAATTATCCTCATGCGCGAGGCAGTC TGAAACTTGTAAGCTTTCCTTTAAATGATAACAACCTAGATATATTAGCTGCAAGAAGTTTCTTCATTTCTTTCCTTTTG CTAGTAGTTAGCAGGGATATGGACCTTGCCTTAATTTTCTAATTAGTCAAACTTGTTCTTTACTGATGGTTAATTGTTAG TTTGATCTATTGTTCTCAAGTGTGAGGCAATTGTAGGTTATATTCTGATCTTATGCGAACCTCCATGGTAAGTAGGTGTA AATTGTCTCTTGAACAAGTGCAGCCACACCAAAATCAAACATTTAGTTGTTTGCTCAAAAACAACTGTTTTGTCTTTTGA TAATTTTATGATTTTTATTAGTGTATCAATGTCGTACCAAAATTTGGTCGGAAATCACATTTTTACATAAGATGATTGTA TCATTTCAATATGGAAGGGTTATGAATTGTACCAATATGCAGTAGGTGAATCACTGAAATTGATAATTAGCATTATGAAG CAGAAGTTTCATAGCAACTAGAAAGGCTGAATTCCATTAGCTTATCAAACACAAAATTGACAATTGTGCAACAAACATTT ATGCTGCTTGGTCACTGAACAGCCAAGTGTATAGAATGAAGAAGTAATGGACTAATGGTTGTGTAGCTATTGCATTTTTA TTTTGAGAAATAAAAATGGTGTTAGCCTGTCTTTCACTTGATTGGCTAAGGAAAAAAGTCTGTTTTCACTCTTTGTGGTA TCTTGAATTTCATTTAGTTTTTGTGTTCAAGCAGTGCTTTTTTGTATTCTTTCTTTCAGTTTTTATAGGATATCAACTTG CTTGGTTAATGGTTTATGAGATCTAGGTATGTTTCTTTTTGCCTAATTTGAGTAATTGGATTATTGGAAGGCTTTGTGGG GAAGTCCACTTCAGCAGTCTTCATGCCTCGTAATGGATGGATTAGTATGTGGTTGTAGGCTGAGGGATGCCCTTGCTACA CAATATATTTTGAGTAATTGGAATACTGAAACTGCTTAGATTCTTTTCTGGTGCTATAGATGAGAAGCAGATGAAGCTGA TATGAGTGAAATATTTTACAATAAGATGTTAGCAGTGTAGACCTTCGGAACATGAACAAATTTCTACTTTTAACTTACAA ACTCCTTCTGAAAAGTGAAAAACTAGTGAGTGTATCCCCTATGCACAACACACAGCCCATAGGAGTTTAGGACCATGAAA ATGCGCTTTCAATACTTGATGTTTGTTTGAACACGCAAAAGTCTTCCTCCCATTTTTGTACCGAGTTCTTTTTGGTCTTT GTTCAACTTTTACTGATTAACCTAATCTGATATTTCATTGAGATGAACAATGATTTCGGCCCTTTTATATGTAGTAATTT TTCTTACATACTGTTTGGTTCAAAGGAGGGGAGGAGAGGGGAGGGATTTTAATGGAGGGGAGGGGAGGGGAGGGGAAGGG AGGGGAGTGATTTTAATACTTATTATGTTTGGTTCATAGGAGGGGAGGGGAGGAAAAATAACTTATTTTTATTTGGTTCA TGAGGGGAGGGGAGAGATTTTATAATTAAAATTACCATAAACCTCAATCAACAGCACTACTCGTTCCAGTGCAAAAGCAA GGAGAAAATATCAGAAAAAGTTCAAAGGAGTTATATAAAATCTCAAGGCCTGCACGGTATATAGCCTATTGCGAAAATCA ATGATCTAGGTTATTGCGAAATGGTGTGAATTTGATAACATTGAACAAATGGAAAAGGAAAAAGAAAAAAGGGAAATTTG TAAGAAAGATGAAAAACCCACCTGGAAGAAGGAAATGGAACAGAGAACAACGGATTCAAAAAATGTGGAACTAGAGTAAC TGAGGAAGGAAAGCCAGCAGAAGATCCAATAGTGAGTGTGACGGTGGAATATTAACAAAAAGAAGGGAAACCCTAGGATA AAAAATTGGAATTTTAAAATTTGTGCAGGGTTATTTTTGTCTGAAATTTATTTCCCCTCCTAATTCCCCCACTTTTGGGA GGAACAAAAAATTGAGGTTGGAGGGATTTTGCTCCCCTCCAATTCCCTCCCCTCCCCTCCTAAAGTTTGAACCAAACAAA ATCAGATTTTAAAAATCTCTCCCCTCCCCTCCGTTCTCCTCCAACCAAACAATCCCTTAAGGACCAACATCTGATATTTC ATTGAGTTGAACAATGATTTTGACCCT
CDS sequence (LotjaGi2g1v0172800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTCAAGTTGCAGGGGATGAAATTGGAAGGTCTTCCCTCGGCGGTTGATCTTCCCTTGCTTAAAGTCCTGCATTT AGAAGATTTGACTATCTCAGAATTCAAGTCTCTCGCTGAGCTTCTTTCGGGATGTCCGAATCTCGAGGACCTCAAAACAA TGGGTTTGTTTATTACTTGTTATGAGTCTTACAGAGAGATTAAAACCTTGCCTAAGTTGGTCAGAGCAGATGTTTCATTG GAAAGTACATATGTTTTGTTCAGAGATGTGGTTGAGAATGTCAAGTTCTTGCGCTTAGATGAGATTTATGATGTAGTCCT CAATGAGAGTGCGCGCCAATACCCTGACTTTATCCCCATGTTTCACAATTTAACCCGTATTGAGCTTGACTATTGCAAAT TTAATAGTGATTGTTCTGAGGTGGTGGAATTGCTCAATCATTGCCCCAAGCTTCAAGATCTTGTCATTGACCAGCCAAAT GTTGAGTCTGATCTATTTGAAGAACCTTTGCAATACCCATCGTCTGTTCCTGAATGCATTCTATCACACCTTCAAAGATG CTATATTAATTGTTATAGAGGCACCAAAGGTGAGTTTCGATTTGCAAAATATATAATGGAGAATGGAAGATTTTTAAAGA GGATGACAATATCAAGTGGCATTGCCAGAAATCCACAGAGAAAACGTAAGATGTTAAAAGAATTATCCTCATGCGCGAGG CAGTCTGAAACTTGTAAGCTTTCCTTTAAATGA
Protein sequence (LotjaGi2g1v0172800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLKLQGMKLEGLPSAVDLPLLKVLHLEDLTISEFKSLAELLSGCPNLEDLKTMGLFITCYESYREIKTLPKLVRADVSL ESTYVLFRDVVENVKFLRLDEIYDVVLNESARQYPDFIPMFHNLTRIELDYCKFNSDCSEVVELLNHCPKLQDLVIDQPN VESDLFEEPLQYPSSVPECILSHLQRCYINCYRGTKGEFRFAKYIMENGRFLKRMTISSGIARNPQRKRKMLKELSSCAR QSETCKLSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 247 | 246 | 9.9E-42 | – | |
| PANTHER | 2 | 247 | 246 | 9.9E-42 | – | |
| SUPERFAMILY | 2 | 185 | 184 | 7.31E-11 | – | |
| Gene3D | 2 | 248 | 247 | 2.5E-12 | ||
| Pfam | 22 | 46 | 25 | 4.2E-4 | ||
| Pfam | 173 | 217 | 45 | 5.9E-17 | ||
| SMART | 178 | 250 | 73 | 7.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0172800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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