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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0172900 |
| Transcript ID | LotjaGi2g1v0172900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56820.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FJT1|FBD29_ARATH Putative FBD-associated F-box protein At5g56820; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0172900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58949084..58950923) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGTTTAGGGTTTATATCCCCAAATCCCCAACTGCAACCGCGAAACTCCATGCCCGCCCTCAAAATTCCCCATTGCGC GCGCTTGGAGACCACGATTTCCACAGGCATAATCGTGTGAATTATTGTTTGAAGAAGCTGAAGTTGCGTTTCAATGGAAA GCAGGAACCGTAAGCTTCTGCATTCATCTACTATGGACGACGATAGGATTAGCATTTTACCGGAGGAACTTCTCTGCCGC ATACTCTCTTTTCTCCCAACAAAGAACGCCGTCGCCACCAGCGTTCTCGCGAAGAAGTGGAAATCACTGTGGCGTTCACT CCCCACTCTCGACATCGATGACGACAATATAAGCGAAGACAACCATGCTCGCTTCGTTGAGTCTATCTCTGCATATATCA ACTCCCGTAACCACCACCAACCTCTTCAGAAATTCCGCCTCAGATTCTCTAACCCGCGTGAGGACTTCACCAATGATACT GACTGTGTTGAATCTGCCCTGCAACTCCTACTTCACCATGTCCAAATTGAGCACATTGATATCGCCCTCCCCTACCCCTG GATGTTTTGCCCAGAATCAGAAGGAGGGGGGCTACAACCGCCAAAACTCAATTTCTGGCCTCTCATATTCACTTTCACAA ATCTTATGGTTCTCAAGCTGGAGGCGATAAGATTCAAGCATTTTTCCTCTGTTGATTTTCCCTTCCTTAAAACCCTGCAT CTGCAAATTGTGCTTTTCGAAAAACGTGAATGTCTTGCCAAACTCCTTTCTGGATGCCCAGTTCTTGAGGATTTCAAAGA AGTTTGTATATTGCCGCAAATGTGTTCTTGTGGTGACATAGAGTTTAATACATTACCCAAGTTGGTCAGAGCCAATGTTT CTGGGCGATATGTTTTTTTGCTTAAAGCTGTTAAAAATGTGCAATTTCTGCACATTACTGAGGTATTGTGATTTATCCTT CATTGTCTTAAGGAAAATAGGTTGTTTCATATCATGGTAATGTTATTGTAACTCATGCAGATTGATGATGGAAACCTGCA TAATTTCAAAAGCACAAACCTATCAGTTTTCCCCATGTTTCACAATTTAACCCATATTGAACTCTCCTTCTGCTGTACAA TGCGTAAGGATTGGCTTCAGGCACTGGAGTTGCTCAAGAATTGCCCCCAGCTTCAAGTTCTCGTCATAAACCAGGTTTGC TTAGAGGCTTAGGTTTTTTTTTGGTGATTTCTGCACTTGTTTTCCTTTATTTATTTATTTTATGTTTATTGTTAACAGCC ATATATAATTGGTAAAATTGAAGGCCAATTAAGAGATTGGCAATGCCCACAATCTGTTCCTGAGTGCATTCTATTACGGC TTAAAAGATGCTATCTAAATGAGTATAGCGGCACCAGAGCTGAGTTTCAATTTGCAAGATATATTATGCAGAATGGAATA TTTTTAGAGAACATGGCAATACGCTGTAGCTATGAGGTAAGTCAAGAGGGAAAGCTTGAGAATCTAAAAGAATTATCCTT ATGCACAAGGAAGTCTGAAACTTGTAAACTTTCCTTTGAATGATAACAAACTAGAGTTGGTAGCTACAAGTAGTTTCTTC ATTTCTTCCTTTTAACTAGTTAGAAGCTAGACACAATAACTATTCTCTTCTAGTTCTTGTTATTCCTCTTTTTCTTTGTT TAGTTGGTTTTATTTTGTATGTTTTATTTAAGAACCTACACTTTTTCAATGTTAATGATGAATGTTATGAGCTGAGTATT TTTTAGCATTATATACGTGTATAGTATAAATTGTATAAAAAGTTCAGTATAGCAGTCATCCCGATATGCACTATATAGCA
CDS sequence (LotjaGi2g1v0172900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGCAGGAACCGTAAGCTTCTGCATTCATCTACTATGGACGACGATAGGATTAGCATTTTACCGGAGGAACTTCT CTGCCGCATACTCTCTTTTCTCCCAACAAAGAACGCCGTCGCCACCAGCGTTCTCGCGAAGAAGTGGAAATCACTGTGGC GTTCACTCCCCACTCTCGACATCGATGACGACAATATAAGCGAAGACAACCATGCTCGCTTCGTTGAGTCTATCTCTGCA TATATCAACTCCCGTAACCACCACCAACCTCTTCAGAAATTCCGCCTCAGATTCTCTAACCCGCGTGAGGACTTCACCAA TGATACTGACTGTGTTGAATCTGCCCTGCAACTCCTACTTCACCATGTCCAAATTGAGCACATTGATATCGCCCTCCCCT ACCCCTGGATGTTTTGCCCAGAATCAGAAGGAGGGGGGCTACAACCGCCAAAACTCAATTTCTGGCCTCTCATATTCACT TTCACAAATCTTATGGTTCTCAAGCTGGAGGCGATAAGATTCAAGCATTTTTCCTCTGTTGATTTTCCCTTCCTTAAAAC CCTGCATCTGCAAATTGTGCTTTTCGAAAAACGTGAATGTCTTGCCAAACTCCTTTCTGGATGCCCAGTTCTTGAGGATT TCAAAGAAGTTTGTATATTGCCGCAAATGTGTTCTTGTGGTGACATAGAGTTTAATACATTACCCAAGTTGGTCAGAGCC AATGTTTCTGGGCGATATGTTTTTTTGCTTAAAGCTGTTAAAAATGTGCAATTTCTGCACATTACTGAGATTGATGATGG AAACCTGCATAATTTCAAAAGCACAAACCTATCAGTTTTCCCCATGTTTCACAATTTAACCCATATTGAACTCTCCTTCT GCTGTACAATGCGTAAGGATTGGCTTCAGGCACTGGAGTTGCTCAAGAATTGCCCCCAGCTTCAAGTTCTCGTCATAAAC CAGCCATATATAATTGGTAAAATTGAAGGCCAATTAAGAGATTGGCAATGCCCACAATCTGTTCCTGAGTGCATTCTATT ACGGCTTAAAAGATGCTATCTAAATGAGTATAGCGGCACCAGAGCTGAGTTTCAATTTGCAAGATATATTATGCAGAATG GAATATTTTTAGAGAACATGGCAATACGCTGTAGCTATGAGGTAAGTCAAGAGGGAAAGCTTGAGAATCTAAAAGAATTA TCCTTATGCACAAGGAAGTCTGAAACTTGTAAACTTTCCTTTGAATGA
Protein sequence (LotjaGi2g1v0172900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESRNRKLLHSSTMDDDRISILPEELLCRILSFLPTKNAVATSVLAKKWKSLWRSLPTLDIDDDNISEDNHARFVESISA YINSRNHHQPLQKFRLRFSNPREDFTNDTDCVESALQLLLHHVQIEHIDIALPYPWMFCPESEGGGLQPPKLNFWPLIFT FTNLMVLKLEAIRFKHFSSVDFPFLKTLHLQIVLFEKRECLAKLLSGCPVLEDFKEVCILPQMCSCGDIEFNTLPKLVRA NVSGRYVFLLKAVKNVQFLHITEIDDGNLHNFKSTNLSVFPMFHNLTHIELSFCCTMRKDWLQALELLKNCPQLQVLVIN QPYIIGKIEGQLRDWQCPQSVPECILLRLKRCYLNEYSGTRAEFQFARYIMQNGIFLENMAIRCSYEVSQEGKLENLKEL SLCTRKSETCKLSFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 413 | 401 | 1.3E-20 | ||
| PANTHER | 16 | 412 | 397 | 1.9E-63 | – | |
| ProSiteProfiles | 16 | 52 | 37 | 9.497 | ||
| PANTHER | 16 | 412 | 397 | 1.9E-63 | – | |
| SUPERFAMILY | 16 | 94 | 79 | 1.7E-11 | ||
| Pfam | 18 | 56 | 39 | 1.2E-6 | ||
| SMART | 22 | 62 | 41 | 0.0035 | ||
| SUPERFAMILY | 155 | 325 | 171 | 3.34E-7 | – | |
| Pfam | 185 | 209 | 25 | 2.0E-6 | ||
| Pfam | 338 | 382 | 45 | 1.5E-10 | ||
| SMART | 343 | 415 | 73 | 0.0062 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0172900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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