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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0173100 |
| Transcript ID | LotjaGi2g1v0173100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G32375.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM93|FBD38_ARATH FBD-associated F-box protein At5g56380; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0173100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58997670..59000099) extracted from Lotus japonicus Gifu genome v1.2.
CAACACAGAGAAAAGTTTAGGGTTTATATCCCCAAATCCCCAACTGCAACCGCGAAACTCCATGCCCGCCCTCAAAATTC CCCATTGCGCGCGCTTGGAGACCACGATTTCCACAGGCATAATCGTGTGAATTATTGTTTGAAGAAGCTGAAGTTGCGTT TCAATGGAAAGCAGGAACCGTAAGCTTCTGCATTCATCTACTATGGACGACGATAGGATTAGCATTTTACCGGAGGAACT TCTCTGCCGCATACTCTCTTTTCTCCCAACAAAGAACGCCGTCGCCACCAGCGTTCTCGCGAAGAAGTGGAAATCACTGT GGCGTTCACTCCCCACTCTCGACATTGATGATTGCAATATAAGCAAAGAGGAGCATGCTCGCTTCATTGAGTCTGTCAAT GCATTTATCAGCTCCCGCCTCAGATTCTCCCGGCACCGGCACCGGCACCACCACCAACCTATCCGAAAATTCCGCCTCAG ATTCTCCTGGCTGTACTGTAAGGACTATACCAATGCCGCTGCGTGTGTTAAATCTGCCGTGAATCACCTAGTTAAGCACC GCCTAGTTGAGCACCTTGATATCGCCCTCCCCTTACCCTGGATTTTTTTGCCCAGAAGGGGGGTTACAGCCAACAAAACA CATATGTCGCCTCTCATCTTCACTTTCACAAATCTTGTGGTTCTCAAGCTGGAGGGGTTAAGATTCACTTCTTTTTCCTC TGTTGATTTTCCCTTCCTTAAAACCCTGTATCTGCAAGATTTGCTTTTCGAAAATCCTCAATGTCTCGCCAAAGTCCTTT CTGGATGCCCAGTTCTTGAGGATTTCAAAGAAGTTCGTATATTTATCGATGGAGAGGTCGATTTGATCGAGAGAGAGTAT TTTACATTACCCAAGTTAGTCAGAGCCAATGTTTCTGGGCGATATGTTTTTTTGCTTAAAGCTGTTAAAAATGTGCAATT TCTGCACATTAATGAGGTATTGTGATTTATCCATCATTGTTTTTCATTTCATTCTTAAGGAAAATGGGTTGTTTAATATC ATATCATGGTATGTTATTGTAACTCATGCAGATTGATGATAGAATCCTGTATAAGGTCAAAAGCACAAACCTATCAGTTT TCCCCATGTTTCACAATTTAACCCATATTGAACTCTCCTTCTCCTGTATAAAGCGTGAGAATTGGCTTGAGGCAGTGGAG TTGCTCAAGTATTGCCCCCAGCTTCAAGTTCTCGTCATAAACCAGGTTTGCTTAGAGGCTTAGTTTTTTTTTTTTTTGGT AATTTCTGCACTTGTTTTCCTTTATTTATTTATTTTATGTTTATTGTTAACAGCCATATATAATTGGTAAAATTGAAGGC CAATTAAGAGATTGGCAATGCCCACAATCTGTTCCTGAATACATTCTATTACGGCTTAAAAGATGCTATCTAAATGAGTA TAGAGGCACCAGAGCTGAGTTTCAATTTGCAAGATATATTATGCAGAATGGAATATTTTTAGAGAACATGGCAATATGCT GCAGCTATGAGGTAAATCAAGAGGGAAAACTTAAGAACCTACAAGAATTATCCTTATGCACAAGGAAGTCTGCAGCTTGT AATCTTTCCTTTAAATGATAACAAACTAGACTTGGTAGCTGCAAGTTGTTTCTTCATTTCTTCCTTTTAACTAGTTAGAA GCTAGACACAATAACTATTCACTTCTAGTTCTTGTTATTCCTCTTTTTCTCTGTTTTGTTGGTTTTATTTTGTATGTGTT GTTTAAGACATCTACACTTTGTTAATGTTAATGATGAATGTCACGAGCTCAGTACTTTTTAGCATTATATACGTGTATAG TACTCCCTCCGTTCCTGATCTTTTGTTGTTTAAGGCTATGCACATTGTTTGTTTAAGAGTGCAATTATTGATATATTTGC TGACATAAACACCCCTATTTAATGTTGAGTTAGAGTGAAGAGAGAGAATGATAGTTATTGGTTAAAAAATTTGTTATGGT TTTGATTGGTGAAAATAAGTGGTGGTAGGTGAGAGAGATAATATTAAATGAGGGTAAACATGGAATAAATTGAGAAAAAA TGCATTGGATTTGTAAAACAACAAAAGTTTTGAAATTTAGGCCAAAAGTTAAAACAACAAAAGATTAGAAACGGAGGGAG TATAAATTGTAGAAAAAGGTCAGTATAACAGTCATCCCGATATGCACTATATAGTATTTTTGGGATTGGCAGCAGAGCTG CTATCCGGCAATGAAATGCTGTCAGTATGAATATGCAGTAGGTGAATTACTGAAATCGATAATTTGCATTATGTAGATAG ATTTCTTTTCGCCTAGTTTGAGTGAGTGGATTATTGGAAGGCTTTGTTGGGAAGTCCACTTCAGCTGTCTTCTGCCTAGT AATGGACGGATTAGCCTACGGTTGTTGGAT
CDS sequence (LotjaGi2g1v0173100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGCAGGAACCGTAAGCTTCTGCATTCATCTACTATGGACGACGATAGGATTAGCATTTTACCGGAGGAACTTCT CTGCCGCATACTCTCTTTTCTCCCAACAAAGAACGCCGTCGCCACCAGCGTTCTCGCGAAGAAGTGGAAATCACTGTGGC GTTCACTCCCCACTCTCGACATTGATGATTGCAATATAAGCAAAGAGGAGCATGCTCGCTTCATTGAGTCTGTCAATGCA TTTATCAGCTCCCGCCTCAGATTCTCCCGGCACCGGCACCGGCACCACCACCAACCTATCCGAAAATTCCGCCTCAGATT CTCCTGGCTGTACTGTAAGGACTATACCAATGCCGCTGCGTGTGTTAAATCTGCCGTGAATCACCTAGTTAAGCACCGCC TAGTTGAGCACCTTGATATCGCCCTCCCCTTACCCTGGATTTTTTTGCCCAGAAGGGGGGTTACAGCCAACAAAACACAT ATGTCGCCTCTCATCTTCACTTTCACAAATCTTGTGGTTCTCAAGCTGGAGGGGTTAAGATTCACTTCTTTTTCCTCTGT TGATTTTCCCTTCCTTAAAACCCTGTATCTGCAAGATTTGCTTTTCGAAAATCCTCAATGTCTCGCCAAAGTCCTTTCTG GATGCCCAGTTCTTGAGGATTTCAAAGAAGTTCGTATATTTATCGATGGAGAGGTCGATTTGATCGAGAGAGAGTATTTT ACATTACCCAAGTTAGTCAGAGCCAATGTTTCTGGGCGATATGTTTTTTTGCTTAAAGCTGTTAAAAATGTGCAATTTCT GCACATTAATGAGATTGATGATAGAATCCTGTATAAGGTCAAAAGCACAAACCTATCAGTTTTCCCCATGTTTCACAATT TAACCCATATTGAACTCTCCTTCTCCTGTATAAAGCGTGAGAATTGGCTTGAGGCAGTGGAGTTGCTCAAGTATTGCCCC CAGCTTCAAGTTCTCGTCATAAACCAGCCATATATAATTGGTAAAATTGAAGGCCAATTAAGAGATTGGCAATGCCCACA ATCTGTTCCTGAATACATTCTATTACGGCTTAAAAGATGCTATCTAAATGAGTATAGAGGCACCAGAGCTGAGTTTCAAT TTGCAAGATATATTATGCAGAATGGAATATTTTTAGAGAACATGGCAATATGCTGCAGCTATGAGGTAAATCAAGAGGGA AAACTTAAGAACCTACAAGAATTATCCTTATGCACAAGGAAGTCTGCAGCTTGTAATCTTTCCTTTAAATGA
Protein sequence (LotjaGi2g1v0173100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESRNRKLLHSSTMDDDRISILPEELLCRILSFLPTKNAVATSVLAKKWKSLWRSLPTLDIDDCNISKEEHARFIESVNA FISSRLRFSRHRHRHHHQPIRKFRLRFSWLYCKDYTNAAACVKSAVNHLVKHRLVEHLDIALPLPWIFLPRRGVTANKTH MSPLIFTFTNLVVLKLEGLRFTSFSSVDFPFLKTLYLQDLLFENPQCLAKVLSGCPVLEDFKEVRIFIDGEVDLIEREYF TLPKLVRANVSGRYVFLLKAVKNVQFLHINEIDDRILYKVKSTNLSVFPMFHNLTHIELSFSCIKRENWLEAVELLKYCP QLQVLVINQPYIIGKIEGQLRDWQCPQSVPEYILLRLKRCYLNEYRGTRAEFQFARYIMQNGIFLENMAICCSYEVNQEG KLKNLQELSLCTRKSAACNLSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 16 | 63 | 48 | 1.44E-11 | ||
| ProSiteProfiles | 16 | 52 | 37 | 9.497 | ||
| PANTHER | 16 | 420 | 405 | 5.5E-62 | – | |
| PANTHER | 16 | 420 | 405 | 5.5E-62 | – | |
| Pfam | 18 | 56 | 39 | 1.3E-6 | ||
| SMART | 22 | 62 | 41 | 0.0035 | ||
| SUPERFAMILY | 160 | 336 | 177 | 8.63E-12 | – | |
| Pfam | 192 | 216 | 25 | 2.2E-4 | ||
| Pfam | 346 | 390 | 45 | 8.3E-9 | ||
| SMART | 351 | 423 | 73 | 0.0098 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0173100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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