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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0173200 |
| Transcript ID | LotjaGi2g1v0173200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56420.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0173200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59021785..59023556) extracted from Lotus japonicus Gifu genome v1.2.
CTAGAAGAAAACTATTTGGCAGTTGAAAATTGTTGAATAGTCACCATCATCAAACACATTTTTAGGGTTTATGAGTTCAT CTCCCCAAGTCCCCACCAGCAAGCGCACAAACTACTCAAAACTCCTCAAATTGGTTCAGCGTAGTTGGTTGAGCACTGAA GTTGCATTGATTTGTGAAGTTGCATGCATCTAAAATGGAAGATAGGCTCAGCATCTTACCGGACCCAATCCTGTGCCACA TTCTCTCTTTTCTCCCAACCGAGGTAGCAATTGCCACAAGCGTTCTCTCGAAGCGGTGGAAGCCTCTATGGCGTTCAGTC CCCACTCTCGACTTCGACTACATTTACGAAAGCAAAGAGGCGAATTCTCGCTTTATTCAATCTGTGTACGCATTCATCTT CACCAGAGATCAACGCCAACCTTTCCACAAATTCCGCATCAGATTATGGGCGGAAACTGAGGAGTCTGAGGAACCTACCA ATGTCGCTGTTTGGCTTAACTTTGCCGCGCAACGCCAGCTTCAGCACCTTGAGATCTGCCTCTTCAATCACCGGGTTCAT TCACTACCACCACCCACCATACCCCCTGACATCTTTTTCACTTGCAGCACAAATCTTGTGGTTCTCAAGTTGCATGGTTT AAGCTTGAAACCTCTTTCCTCTGTTGATTTTCCCTTTCTTAAAACCCTGCATCTCCAAACTTCACTTTTCTTAGAGTATG AATGTCTCGCCCTTCTTCTTTCCCGATGTCCACTTCTTCAGGATTTCAAAGCATCATCGCGTTTGTTTTTTATCTACAAT TTTTCTGATGGTATTCATTCTAACTGCTTACCAGTACAGTTTTTCCACATACGGCAGGTTCTGTTATTTATTCATTCATC ATTGTTATTCGTTCGTAAGATAAATTGGATGTTTGATGTCATGGTACTGTAACTCATGCAGATTAATAATCAAGTCCTGC ATCATCATGAAAGCACAAATATTTCTGCTTTCACCATGTTTCGCAATTTAACTCATATGGAATTCTCCAATATAATGTGT AATAAGGACTGGCTTAACATAGTTGAAATGCTCAAGTATTGCCCCAAGCTTCAAGTTCTTGTCATTAATCAGGTTTGTTT AGTGGCTTAGCATGATTTCTATTTTATTTTTATGTCATTTGTTCACATGTTATCAACTTCACTTAATTATTTATTTTTGT GTTAATTGTTAACAGCAACATGATCTTATCTATGAGAATATTCAATTTGAAGTCGACTTAAGAGATTGGCAATGCTCACT ACCTGGTCCTGAATGCATTCAATTACACCTTAAAAGATGCTATCTAAATGATTATAGAGGCACTGAAGGTGAGTTTCAAT TTGCAAGATATATTCTCCAGAATGGAAGAGTTTTAGAGAGCATGATAATATGCAGTTTCCCTGACGTTAAACAACAGGAA AAGCATGAGAATCTTAAAAAATTATCCTCATGCACGAGGCTTTCTCCAACTTGTGAACTTCTCTTTGATGAACGAGAGAC CTGGAAGCTGCCTGTAGTTTGTTCATTTCTTGCTCTTAACTAGTTAGTAGCCTGATACAAGGATATGGACCTTGTCTTAA TTTTCAAATCAGTAGAACTTTCTCCTTACTGATGACTAATTGTAAATTTAAGATATGGTGCCCAAGTGCGAGACAATTGT ATTTCAGATTGTGATCTTGTGTGAACTTCCAATCTATGGTATTAAGTTTAAATTCTCTCTCAAACTAGCACAATTATGCA CAAGAATCAAAC
CDS sequence (LotjaGi2g1v0173200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATAGGCTCAGCATCTTACCGGACCCAATCCTGTGCCACATTCTCTCTTTTCTCCCAACCGAGGTAGCAATTGC CACAAGCGTTCTCTCGAAGCGGTGGAAGCCTCTATGGCGTTCAGTCCCCACTCTCGACTTCGACTACATTTACGAAAGCA AAGAGGCGAATTCTCGCTTTATTCAATCTGTGTACGCATTCATCTTCACCAGAGATCAACGCCAACCTTTCCACAAATTC CGCATCAGATTATGGGCGGAAACTGAGGAGTCTGAGGAACCTACCAATGTCGCTGTTTGGCTTAACTTTGCCGCGCAACG CCAGCTTCAGCACCTTGAGATCTGCCTCTTCAATCACCGGGTTCATTCACTACCACCACCCACCATACCCCCTGACATCT TTTTCACTTGCAGCACAAATCTTGTGGTTCTCAAGTTGCATGGTTTAAGCTTGAAACCTCTTTCCTCTGTTGATTTTCCC TTTCTTAAAACCCTGCATCTCCAAACTTCACTTTTCTTAGAGTATGAATGTCTCGCCCTTCTTCTTTCCCGATGTCCACT TCTTCAGGATTTCAAAGCATCATCGCGTTTGTTTTTTATCTACAATTTTTCTGATGGTATTCATTCTAACTGCTTACCAG TACAGTTTTTCCACATACGGCAGATTAATAATCAAGTCCTGCATCATCATGAAAGCACAAATATTTCTGCTTTCACCATG TTTCGCAATTTAACTCATATGGAATTCTCCAATATAATGTGTAATAAGGACTGGCTTAACATAGTTGAAATGCTCAAGTA TTGCCCCAAGCTTCAAGTTCTTGTCATTAATCAGCAACATGATCTTATCTATGAGAATATTCAATTTGAAGTCGACTTAA GAGATTGGCAATGCTCACTACCTGGTCCTGAATGCATTCAATTACACCTTAAAAGATGCTATCTAAATGATTATAGAGGC ACTGAAGGTGAGTTTCAATTTGCAAGATATATTCTCCAGAATGGAAGAGTTTTAGAGAGCATGATAATATGCAGTTTCCC TGACGTTAAACAACAGGAAAAGCATGAGAATCTTAAAAAATTATCCTCATGCACGAGGCTTTCTCCAACTTGTGAACTTC TCTTTGATGAACGAGAGACCTGGAAGCTGCCTGTAGTTTGTTCATTTCTTGCTCTTAACTAG
Protein sequence (LotjaGi2g1v0173200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDRLSILPDPILCHILSFLPTEVAIATSVLSKRWKPLWRSVPTLDFDYIYESKEANSRFIQSVYAFIFTRDQRQPFHKF RIRLWAETEESEEPTNVAVWLNFAAQRQLQHLEICLFNHRVHSLPPPTIPPDIFFTCSTNLVVLKLHGLSLKPLSSVDFP FLKTLHLQTSLFLEYECLALLLSRCPLLQDFKASSRLFFIYNFSDGIHSNCLPVQFFHIRQINNQVLHHHESTNISAFTM FRNLTHMEFSNIMCNKDWLNIVEMLKYCPKLQVLVINQQHDLIYENIQFEVDLRDWQCSLPGPECIQLHLKRCYLNDYRG TEGEFQFARYILQNGRVLESMIICSFPDVKQQEKHENLKKLSSCTRLSPTCELLFDERETWKLPVVCSFLALN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 54 | 53 | 8.968 | ||
| PANTHER | 2 | 196 | 195 | 1.8E-57 | – | |
| PANTHER | 2 | 196 | 195 | 1.8E-57 | – | |
| Gene3D | 3 | 288 | 286 | 2.3E-20 | ||
| SUPERFAMILY | 3 | 48 | 46 | 5.23E-12 | ||
| Pfam | 5 | 42 | 38 | 8.2E-5 | ||
| SUPERFAMILY | 108 | 316 | 209 | 2.9E-7 | – | |
| PANTHER | 235 | 373 | 139 | 1.8E-57 | – | |
| PANTHER | 235 | 373 | 139 | 1.8E-57 | – | |
| Pfam | 303 | 343 | 41 | 2.2E-12 | ||
| SMART | 304 | 376 | 73 | 2.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0173200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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