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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0173400 |
| Transcript ID | LotjaGi2g1v0173400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0173400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59043160..59044943) extracted from Lotus japonicus Gifu genome v1.2.
GTCGAGCTCAGTCTGACACAGCAGCAGCAATCACTCAATGGTCATGAGGAGCTGTATCGCTGATAACTTCTCAAACACGT TTTTAGGGTTCATGAGTTTATCCCCCGGGGACCCCCGAGTTCCCAATATCAAGCGCACAAACTTCTCAAAACGCATAGAC ATAGTTGGTTGAGCACTGTGTTTTTCTCTTATACAGAAGGTGAAGTTGCTTTGATTTGTGGATTTGCATTCATCTAAGAT GGATGATAGGCTCAGCCTGCTACCAGACCCAATCCTCTGCCACATACTCTCTTTTCTCCCAACCAAGCAATCCGTTGCCA CAAGCGTTCTCTCCAAGCGGTGGATGCCTCTGTGGCGTTCGGTTCCCACTCTGGACTTGGAGTATAGCAACTATACCGGA AACAAAGAGGAATATGCTCGATTTGTTCATTCGGTGTATGCATTCATCGTCTCCCGAGATATGCACCACCCTATCCAGAA ATTTCGCCTCAATTGTTCCTTTCATTCTTACGATCCTACCAATGTCAGCGTATGGGTTAATGCTGTTGTTCAATGCAAAG TCCAGCACCTCGAGCTCTCCCTCTGTACCCCGAATCCTCTTCAACCACTCCCTAACTTGTCTTCCATCTTCACTTGCAAA ACTCTCCTGGTTCTTAAGTTGCAGGGCACCAAGTTGGAACCTATTTCCTCTGGCTCTGTTGATTTACCTTTCCTTAAACT CCTCCATCTACAAGATTTGAGGTTCTCAAAACGTGCATGTCTCGCCGAGCTTCTTTCTGGATGTCCAATTCTTGAGGATT TTAAAGCAAAACGTTTATATTTTCATCAAGATGTCGCTGATACAGAGTTTAAAACATTACCAAAGTTGCTGGGATTGGTT AACAATGTCAAGTTTTTGCGCATAGATTGGGTAATTTGATTTATGAATCATTATTTTTCATTCCTAACTGAAATGAGATA TTTGATTTCTTGTAATTGTAACTCATGCAGATTGCGCGCAGACTTGGTAATGGCCCTGGCCCGTACGTTTTCCCCATGTT TCACAATTTGACCCATGTTGAACTTGAATATAGAACTTTTAATACTGATTGGTCTGAGGTTGTGGAATTGCTCAAGTGTT GCCCCAAGCTTCAAGTTCTTATCATTAACCAGGTTTGCTTACAGGCTTAGAATGATTTCTATTTCTTGTCACTTCTTCAT TTCATTTACTTATTTTGTTTTTGTTGTTGACAGCCAAGTTTACGTTTCTCTGAGTCTCAGCTACTTGAAGTACCAGAAAA TTGGCAGTACCCACCATTTGTTCCTAAATGCATTCTATTACACCTTAAAACATGCAGTCTAAATAATTACAGGGGCACCA AAGGTGATTTTCAATTTGCAAAGTATATAATGCGGAACGGAAGATTTTTAAAGAGGCTGACAATATCCAGTAGCCTTGGC ATAAAAAAACGGGGAAAGCTTGAGCTGTTAAAGAAATTATCCTCATGCAAGAGGCGCTCTGCAACTTGTAAACTTTCCTT TAACTGATAACAAACTAGATATGTTAGCTGCGAGTAGTTTTTTCATTTCTTCCTCTTAACTAGTAGCTAGCTACAAGGAT ATGGATCTTGTCTTAATTTTCAAATTAGTCGAACTTGTTCTTTAGTTATGGGGAATTTTAAAATTGAGATTTAGTGCTTA AGTGTGAGACAATTGAATGTTAACTTCTGATCTTATGCAAACCTCCATGGTAGGTAGGTGTACATTCTCTCTCAAACAAA AGCAGGAGCAGCACCCGTAAAAAT
CDS sequence (LotjaGi2g1v0173400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATAGGCTCAGCCTGCTACCAGACCCAATCCTCTGCCACATACTCTCTTTTCTCCCAACCAAGCAATCCGTTGC CACAAGCGTTCTCTCCAAGCGGTGGATGCCTCTGTGGCGTTCGGTTCCCACTCTGGACTTGGAGTATAGCAACTATACCG GAAACAAAGAGGAATATGCTCGATTTGTTCATTCGGTGTATGCATTCATCGTCTCCCGAGATATGCACCACCCTATCCAG AAATTTCGCCTCAATTGTTCCTTTCATTCTTACGATCCTACCAATGTCAGCGTATGGGTTAATGCTGTTGTTCAATGCAA AGTCCAGCACCTCGAGCTCTCCCTCTGTACCCCGAATCCTCTTCAACCACTCCCTAACTTGTCTTCCATCTTCACTTGCA AAACTCTCCTGGTTCTTAAGTTGCAGGGCACCAAGTTGGAACCTATTTCCTCTGGCTCTGTTGATTTACCTTTCCTTAAA CTCCTCCATCTACAAGATTTGAGGTTCTCAAAACGTGCATGTCTCGCCGAGCTTCTTTCTGGATGTCCAATTCTTGAGGA TTTTAAAGCAAAACGTTTATATTTTCATCAAGATGTCGCTGATACAGAGTTTAAAACATTACCAAAGTTGCTGGGATTGG TTAACAATGTCAAGTTTTTGCGCATAGATTGGATTGCGCGCAGACTTGGTAATGGCCCTGGCCCGTACGTTTTCCCCATG TTTCACAATTTGACCCATGTTGAACTTGAATATAGAACTTTTAATACTGATTGGTCTGAGGTTGTGGAATTGCTCAAGTG TTGCCCCAAGCTTCAAGTTCTTATCATTAACCAGCCAAGTTTACGTTTCTCTGAGTCTCAGCTACTTGAAGTACCAGAAA ATTGGCAGTACCCACCATTTGTTCCTAAATGCATTCTATTACACCTTAAAACATGCAGTCTAAATAATTACAGGGGCACC AAAGGTGATTTTCAATTTGCAAAGTATATAATGCGGAACGGAAGATTTTTAAAGAGGCTGACAATATCCAGTAGCCTTGG CATAAAAAAACGGGGAAAGCTTGAGCTGTTAAAGAAATTATCCTCATGCAAGAGGCGCTCTGCAACTTGTAAACTTTCCT TTAACTGA
Protein sequence (LotjaGi2g1v0173400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDRLSLLPDPILCHILSFLPTKQSVATSVLSKRWMPLWRSVPTLDLEYSNYTGNKEEYARFVHSVYAFIVSRDMHHPIQ KFRLNCSFHSYDPTNVSVWVNAVVQCKVQHLELSLCTPNPLQPLPNLSSIFTCKTLLVLKLQGTKLEPISSGSVDLPFLK LLHLQDLRFSKRACLAELLSGCPILEDFKAKRLYFHQDVADTEFKTLPKLLGLVNNVKFLRIDWIARRLGNGPGPYVFPM FHNLTHVELEYRTFNTDWSEVVELLKCCPKLQVLIINQPSLRFSESQLLEVPENWQYPPFVPKCILLHLKTCSLNNYRGT KGDFQFAKYIMRNGRFLKRLTISSSLGIKKRGKLELLKKLSSCKRRSATCKLSFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 52 | 51 | 8.994 | ||
| Gene3D | 2 | 44 | 43 | 3.5E-5 | – | |
| PANTHER | 2 | 199 | 198 | 9.2E-72 | – | |
| PANTHER | 2 | 199 | 198 | 9.2E-72 | – | |
| SUPERFAMILY | 3 | 50 | 48 | 3.79E-12 | ||
| Pfam | 5 | 41 | 37 | 5.1E-6 | ||
| Gene3D | 85 | 372 | 288 | 3.1E-13 | ||
| SUPERFAMILY | 95 | 361 | 267 | 1.29E-11 | – | |
| PANTHER | 211 | 372 | 162 | 9.2E-72 | – | |
| PANTHER | 211 | 372 | 162 | 9.2E-72 | – | |
| Pfam | 300 | 342 | 43 | 1.1E-14 | ||
| SMART | 303 | 375 | 73 | 1.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0173400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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