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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0173600 |
Transcript ID | LotjaGi2g1v0173600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0173600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59109185..59111481) extracted from Lotus japonicus Gifu genome v1.2.
CACACTATCGCACTCGCCAATCGTCCCTAAGTCTCGTTGCTGTGACCTAGCGCTTCTCTTCTCTGGTTCCGGCTTTGTGC TTCATCGTGGCCAAGGTATTCACCTCCTTTACTTTGAGCATATGCATCATCCACAGCTTAAATGCCCTGTTCCCCTTTCA AGTTTGTATTCTAATCAATGTCTTTTCTTCCGCCAAGGTTCATCTAACGTGCTTTTTGTTTCCTTTCGTTGATTGCTTTC TGTTTAATCCTTTAATATGGTTCTACATCTTTCTTTCTTAATGCGTTGGCTATATGATCTTTTCTTTATCTTACTGAGTT CATGCGATTTGCTTTTTGATAGAAGTGGGTGAGTTTCCACGGATTTGTTTTTAGTAACATTCACTTCAGTTATTTATAAA CTTGCAGCCGGGAATTCGGATTATCTAGGAAGGATGGGCGATTTGGTTAGCACCTTACCGGAGGAACTCATATGCCACAT ACTCTCTTTTCTCCCAACCAAGCAAGTTGTTGCCACAAGCATTCTCTCCAAGCGATGGATGCCTCTATGGCGTTCAGTTT CTACTCTCGACTTCGATGATTCCGACTTTAATGGAAGCAAAAAGGCTTATGCTCGTTTTGTTCAGTCGGTGTATGCATTC ATCGTCTCCCGCGATATGCACCTCCCTATCGAAAAAGTTCGCCTCAATTGTTCCTCCTATGTTTGTGATCCTGCCACTGT CAGTGAATGGGTTAATGTTGTTGTGCAACACAGAGTTCAACACCTTGATCTCTGGCTCCCCCTCCGTTACCTCTATGTTC AACAACCCCCTAACTTGTCTTCCATCTTCACTTGCAAAACTCTCGTAGTTCTCAAGTTGCATTGCACCAAGTTGGAACCT ATTTCCTCTGTTGATTTACCTTTCCTTAAACTCCTCCATCTAAAAGATTTGAGGTTCTCAAAACGTGCATGTCTCGCCGA GCTTCTTTCTGGATGTCCAATTCTTGAGGATTTTAAAGCAAAACGTTTATATTTTCATCAAGATGTCGCTGATACAGAGT TTAAAACATTACCAAAGTTGCTGGGATTGGTTAACAATGTCAAGTTTTTGCGCATAGATGGGGTAATTTGATTTATGAAT CATTATTTTTCATTCCTAACTGAAATGAGATATTTGATTTCTTGTAATTGTAACTCATGCAGATTGCGCGCAGACTTGGT AATGGCCCTGGCCCGTACGTTTTCCCCATGTTTCACAATTTGACCCATGTTGAACTTGAATATAGAACTTATAATACTGA TTGGTCTGAGGTTGTGGAATTGCTCAAGTGTTGCCCCAAGCTTCAAGTTCTTATCATTAACCAGGTTTGGTTACAGACTT AGAATGATTTCTATTTCTTGTCACTTCTTCATTTCATTTATTTATTTTGTTTTTGTTGTTGACAGCCAAGTATACCTTTC AATGAGCCTGATCTACTTGAAAAACCAGCAAAGTGGCAGTACCCACCATCTGTTCCTAAATGCATTTTGTTACACCTTAA AAAATGCTGCCTTAATAATTTTAGAGGAACCAAAGGTGAGTTTCAATTTGCAAAGTATATAATGAGGAACGGAAGATTTT TGAAGAGGATGACAATATCCAGTGGGATTTTCATAAATCAAGGGGGAAAGGTTGAGATGTTAAAAAAACTATCCTGTTGC ATGAGGAGTTCTGCAACTTGTAAACTTTCCTTTAACTGATAACAAACTCGATATGTTCGCTGCAAGTAGTTTTTTCATTC CTTCCTTTTAACTAGTAGCTAGCTACAAGGATATGGATCTTGTCTTAATTTTCAAATTAGTGGAACTTGTTCTTTACTGA TGGTTAATTTTAAAATTGAGATATAGTGCTCAAGTGTGAGACAATTGTATGTTAGCTTCTCATCTTACGCAAACCTCCAT GGTAGGTAGGTGTATTACTCTCTCAAATGAGCAGGAGCGGAGCAGCACCCGTAAAAATATAACATTTAGTTGTTTGTTAA AAGAGAACTCTCTTTTGTCTTTGGATAGGTATGAGTTTTTGTTTTAATGTTGTGTATCAATGTCTTAGCAGAATTTTGTC AGAATTAAATTTTCACCTAAGATGATTTTATCTTTTATATAAGAATGGGTTATAGATTGTATTAATATTATCCCGTATGT GGATCACTGGAATCTATGATTAGCATTATGAAGAAGTTTTATAGCACGGCTGAATCCTATTAGATTATCAATCATAAGCT TATATTCAATGAACAAACAATTGTGCAGAGTGAAGGAGTACTAGTTGTGCAGCTATT
CDS sequence (LotjaGi2g1v0173600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGATTTGGTTAGCACCTTACCGGAGGAACTCATATGCCACATACTCTCTTTTCTCCCAACCAAGCAAGTTGTTGC CACAAGCATTCTCTCCAAGCGATGGATGCCTCTATGGCGTTCAGTTTCTACTCTCGACTTCGATGATTCCGACTTTAATG GAAGCAAAAAGGCTTATGCTCGTTTTGTTCAGTCGGTGTATGCATTCATCGTCTCCCGCGATATGCACCTCCCTATCGAA AAAGTTCGCCTCAATTGTTCCTCCTATGTTTGTGATCCTGCCACTGTCAGTGAATGGGTTAATGTTGTTGTGCAACACAG AGTTCAACACCTTGATCTCTGGCTCCCCCTCCGTTACCTCTATGTTCAACAACCCCCTAACTTGTCTTCCATCTTCACTT GCAAAACTCTCGTAGTTCTCAAGTTGCATTGCACCAAGTTGGAACCTATTTCCTCTGTTGATTTACCTTTCCTTAAACTC CTCCATCTAAAAGATTTGAGGTTCTCAAAACGTGCATGTCTCGCCGAGCTTCTTTCTGGATGTCCAATTCTTGAGGATTT TAAAGCAAAACGTTTATATTTTCATCAAGATGTCGCTGATACAGAGTTTAAAACATTACCAAAGTTGCTGGGATTGGTTA ACAATGTCAAGTTTTTGCGCATAGATGGGATTGCGCGCAGACTTGGTAATGGCCCTGGCCCGTACGTTTTCCCCATGTTT CACAATTTGACCCATGTTGAACTTGAATATAGAACTTATAATACTGATTGGTCTGAGGTTGTGGAATTGCTCAAGTGTTG CCCCAAGCTTCAAGTTCTTATCATTAACCAGCCAAGTATACCTTTCAATGAGCCTGATCTACTTGAAAAACCAGCAAAGT GGCAGTACCCACCATCTGTTCCTAAATGCATTTTGTTACACCTTAAAAAATGCTGCCTTAATAATTTTAGAGGAACCAAA GGTGAGTTTCAATTTGCAAAGTATATAATGAGGAACGGAAGATTTTTGAAGAGGATGACAATATCCAGTGGGATTTTCAT AAATCAAGGGGGAAAGGTTGAGATGTTAAAAAAACTATCCTGTTGCATGAGGAGTTCTGCAACTTGTAAACTTTCCTTTA ACTGA
Protein sequence (LotjaGi2g1v0173600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDLVSTLPEELICHILSFLPTKQVVATSILSKRWMPLWRSVSTLDFDDSDFNGSKKAYARFVQSVYAFIVSRDMHLPIE KVRLNCSSYVCDPATVSEWVNVVVQHRVQHLDLWLPLRYLYVQQPPNLSSIFTCKTLVVLKLHCTKLEPISSVDLPFLKL LHLKDLRFSKRACLAELLSGCPILEDFKAKRLYFHQDVADTEFKTLPKLLGLVNNVKFLRIDGIARRLGNGPGPYVFPMF HNLTHVELEYRTYNTDWSEVVELLKCCPKLQVLIINQPSIPFNEPDLLEKPAKWQYPPSVPKCILLHLKKCCLNNFRGTK GEFQFAKYIMRNGRFLKRMTISSGIFINQGGKVEMLKKLSCCMRSSATCKLSFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 2 | 50 | 49 | 9.206 | ||
PANTHER | 3 | 371 | 369 | 4.1E-73 | – | |
PANTHER | 3 | 371 | 369 | 4.1E-73 | – | |
SUPERFAMILY | 3 | 52 | 50 | 8.76E-12 | ||
Gene3D | 5 | 284 | 280 | 2.9E-26 | ||
Pfam | 6 | 41 | 36 | 1.9E-7 | ||
SUPERFAMILY | 116 | 277 | 162 | 3.02E-10 | – | |
Pfam | 298 | 341 | 44 | 6.7E-16 | ||
SMART | 302 | 374 | 73 | 4.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0173600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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