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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0173700 |
| Transcript ID | LotjaGi2g1v0173700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT2G26030.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FJC0|FBD20_ARATH Putative FBD-associated F-box protein At5g53640; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0173700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59121766..59125321) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGAATGAACATGGATTCGATTTGACACCCCATTCATTAGAAATGTCATCACACTTAAAACAATTTCAGAAATTTAAT TTCCAAAATATTTTGGAACTTAAAAATCCGAAGTATTTCAATGGAAAGCAGGGACTGTAAGCTTCTGCATTCATCTACTA TGGACGACGATAGGATTAGCAGTTTACCAGAGGAACTTCTCTGCCGCATACTCTCTTTTCTCCCAACAAAGAACGCCGTC GCCACCAGCGTTCTCGCGAAGAAGTGGAAATCACTGTGGCGTTCACTCCCCACTTTGGACATTGATGACGACAATATAAG CGAAGACAACCATGCTCGCTTCGTTGAGTCTTTCAATGCATATATCAGCTCCTGTGACCACCACCAACCTCTTCAGAAAT TCCGCCTCAGATTCTCTAACCCCTATGATGACTTCACCAATGTCAATGCCTGTATGAAATCTTCCTTGCAACTCCTACTT CAGCACCTCCAAATTGAGCACATTGATATCGCCCTCCCCTTTCCCTGGATACAACCAACAAAACACATTATGTCGCCTCT TATATTCACTTTCACAAATCTTGTGGTTCTCAAGCTGGAGGCGATAAGATTCAAGCATTTTACCTCTGTTGATTTTCCCT TCCTTAAAACCCTGCATCTGCAAGATTTGCTTTTTGACAATCGTCAATGTCTCACAAAAGTCCTTTCTGGATGCCCAGTT CTTGAGGATTTCAAAGAAGATTGTATAGTTATGGATGGAGAGGTCGATAATGATTTGACCGAGAGAGAGTATTTTACATT ACCCAAGTTGGTCAGAGCCAATGTTTCTGGGCAATATGCTTTTTTGCTTAAAGCTGTTAAAAATGTGCAATTTCTGCACA TTAATGGGGTAGTGTGATTTATCCATCATTGTTTTTCATTTCATTCTTAAGGAAAATTGAATGTTTGATATCAGGTTAAT GCTATTGTAACTCATGCAGATTGATGATAGAAACCTGCATAATTTCAAAGGCACAAACTTATCAGTTTTCCCCTTACTTC ACAATTTAACCCATATTGAACTCTCCTTCTCCTGTACAATGTGTAAGGATTGGCTTCAGGCACTGGAGTTGCTCAAGAAT TGCCCCCAGCTTCAAGTTCTCGTCATAAACCAGGTTTGCTCAAGTATTTATGCACAAGGAAGTCTGAAACTTGTAAACTT TCCTTTGAATGTAAACAAACTAGACTTGGTAGCTGCAAGTAGTTTCTTCATTTCTTCCTTTTAACTAGTTACTAGCTAGA CACAATAACTATTCTCTTCTAGTTCTTGTTATTCCTCTTTTTCTTTGTTTTGTTGGTTCTATTTTGTATGTTTTGTGTAA AACATCTACACTTTGTTTAAATTGTGTAAAAAGTTCAGTATAGCAGTCATCCCGATATGCACTATAAGTATTTTTGGGGT TGGCAGCAGAGCTGCTATCCGACAATGAAATGCTGTCACTATGATTATGCTGTAGGTAAATCACTGAAATCGATAATTTG CATTATGAAGCAGAAGTTTTATAGCAAGGCTTAATCATAACTGCTTATCAAACACATAGTTGACAGCTGTTCAACAAACT TTTATCCTGCTTGGTCACTGAACAACCTAGTGTATAGAGGGAAGAAGTAATGGTTGTGTAGCTATTGTATTTGTTTAGGA AATAAAAATGGTGTTAGCCTGTCTTTCACTTGAATAGCTAAGGAAAATACGAGCGAGTTTCACGGTTGAAGAAGCTGAAG TTGCATTTCAATGGAAAGCAGGAACAGTAAGCTTCTGCATTCATCTCCGATGGAAGACGATAGGATTAGCATTTTACCGG AGGAACTTCTCTGCCACATCCTCTCTTTTCTCCCGACAAAGCAATCCGTTGCAACAAGCGTTCTCTCGAAGAAGTGGAAA CCACTGTGGCGTTCAGTCACCACTCTCCACTTCGACGATGCCAAATATCTTACCGTACGCAAAGAGAAAGAGGTTTATGC CCCCTTTGTTGAGTCAGTGTACAGAGTTATGTTTTCACGAGAAATCCACCAATCCATCAAAAAATTCCGCCTCAGATGTA TCTCTACTCATTTTTATGATCCTATCAATGTCAGCATATGGGTTAACTCTGCTGTCAAACGCAGAGTTCACCACCTCGAT ATCTGCCTCGGCATACACTTGCTTCGCGAATCACTCACCAACTTGTCTTCCATCTTCACTTGCACAACTCTCGTGGTTCT CAACTTGCGGGGCACCGAGTTGGAACCTATTTCCTCTGTTGATTTACCTTTCCTTAAACACCTCCATCTACAAGATTTGA GGTTCTCAAACGTGCATGTCTCGTCGTGCTTCTTTCTGGATGTCCAATTCTTGAGGACTTTAAAGCAACAAATTTATCTT TTCATCAAGATGTCGCTGATAGAGAGTTTAAAACCTTACCAAAGTTACTCAGAGCAGATATTTCTGCGAGAACTGACAAT TTTTTGCTGGGAGTGGTTAACAATGTCAAGTTTTTGCGCATAGATGGGGTAATTTGATTTATGAATCATTATTTTTCATT CCTAACTGAAATGAGATATTGATATCTTGTTATTGTAACTCATGCAGATTCGTTATAGTCTTGGTAACGGCACAAGACCC TACGTTTTCCCCATGTTTCACAATTTAACCCATCTTGAGCTTGTCTATATAAGTTATAATGTTAATTGGTCTCAGGTGGT GGAATTGCTCCAGCATTGCCCCATGCTTCAAGTTCTTGTCATTAACCAGGTTTCATTCGAGGCTTAAAGTGATTTCTATT TTTTCTCAATTCTTCATTTCATTTATTTATTTTGTGTTCATTTTTAACAGCGAAGTTTTTTGATGAAGAGTTTGATCTAT CTGAAGAAACAGCAGATTGGCAGTATCCACCATCTGTTCCTAAATGCATTCTATCACACCTTAAAAGTTGCTATCTAAAT GATTTTAGAGGCACAAAAGGTGAGGTTCGATTTGCAAGATATATTATGCGGAATGGAAGATTTCTAAAGAGTATGACAAT ATGCTGTGGCATTCGCATAAAGCAACCACAAAAGGTTGAGATCTTAACAAAATTATCCTCATGCACGAGGCGCTCGAACA CTTGTAAACTTTCCTTTAAATGATTTGTGCCATTAGGCACTAGGCAGTATGTGGATCACTGGAATCTATAATTAGCATTA TGAAGCAGAAGTTTCACAGCAAGGCAGAATATTAATAGCTTATGAAGCACGACACTTGTGCAACCAGCTCTTATGGTGCT TCGGTATTGAACAGTCAATTCCAGAGGGAAAGAGTTATGGTTGTGCAGTTATAGTTTCTTCTGATTTAAGACGAGTATTA GGTGTAGTGAAATCGTTTAGATTATTTGGTACCTTTATGAAGGGAATTCAGAAGTGAGTAACAGAACAAGCTGAAGATCA ATGAAATAGTTTGATGAAGGATGTTTCTCTTTCTTGTCATCTTTGGATTTTTCTTCTTCTTCAAATGGATTTTATTTTTG GGTATTCTTGACTCTTGAGCTTGTGCAGCAGTTCTG
CDS sequence (LotjaGi2g1v0173700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGCAGGGACTGTAAGCTTCTGCATTCATCTACTATGGACGACGATAGGATTAGCAGTTTACCAGAGGAACTTCT CTGCCGCATACTCTCTTTTCTCCCAACAAAGAACGCCGTCGCCACCAGCGTTCTCGCGAAGAAGTGGAAATCACTGTGGC GTTCACTCCCCACTTTGGACATTGATGACGACAATATAAGCGAAGACAACCATGCTCGCTTCGTTGAGTCTTTCAATGCA TATATCAGCTCCTGTGACCACCACCAACCTCTTCAGAAATTCCGCCTCAGATTCTCTAACCCCTATGATGACTTCACCAA TGTCAATGCCTGTATGAAATCTTCCTTGCAACTCCTACTTCAGCACCTCCAAATTGAGCACATTGATATCGCCCTCCCCT TTCCCTGGATACAACCAACAAAACACATTATGTCGCCTCTTATATTCACTTTCACAAATCTTGTGGTTCTCAAGCTGGAG GCGATAAGATTCAAGCATTTTACCTCTGTTGATTTTCCCTTCCTTAAAACCCTGCATCTGCAAGATTTGCTTTTTGACAA TCGTCAATGTCTCACAAAAGTCCTTTCTGGATGCCCAGTTCTTGAGGATTTCAAAGAAGATTGTATAGTTATGGATGGAG AGGTCGATAATGATTTGACCGAGAGAGAGTATTTTACATTACCCAAGTTGGTCAGAGCCAATGTTTCTGGGCAATATGCT TTTTTGCTTAAAGCTGTTAAAAATGTGCAATTTCTGCACATTAATGGGATTGATGATAGAAACCTGCATAATTTCAAAGG CACAAACTTATCAGTTTTCCCCTTACTTCACAATTTAACCCATATTGAACTCTCCTTCTCCTGTACAATGTGTAAGGATT GGCTTCAGGCACTGGAGTTGCTCAAGAATTGCCCCCAGCTTCAAGTTCTCGTCATAAACCAGGTGGTGGAATTGCTCCAG CATTGCCCCATGCTTCAAGTTCTTGTCATTAACCAGCGAAGTTTTTTGATGAAGAGTTTGATCTATCTGAAGAAACAGCA GATTGGCAGTATCCACCATCTGTTCCTAAATGCATTCTATCACACCTTAAAAGTTGCTATCTAA
Protein sequence (LotjaGi2g1v0173700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESRDCKLLHSSTMDDDRISSLPEELLCRILSFLPTKNAVATSVLAKKWKSLWRSLPTLDIDDDNISEDNHARFVESFNA YISSCDHHQPLQKFRLRFSNPYDDFTNVNACMKSSLQLLLQHLQIEHIDIALPFPWIQPTKHIMSPLIFTFTNLVVLKLE AIRFKHFTSVDFPFLKTLHLQDLLFDNRQCLTKVLSGCPVLEDFKEDCIVMDGEVDNDLTEREYFTLPKLVRANVSGQYA FLLKAVKNVQFLHINGIDDRNLHNFKGTNLSVFPLLHNLTHIELSFSCTMCKDWLQALELLKNCPQLQVLVINQVVELLQ HCPMLQVLVINQRSFLMKSLIYLKKQQIGSIHHLFLNAFYHTLKVAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 313 | 298 | 2.6E-48 | – | |
| PANTHER | 16 | 313 | 298 | 2.6E-48 | – | |
| ProSiteProfiles | 16 | 52 | 37 | 10.08 | ||
| SUPERFAMILY | 16 | 68 | 53 | 1.7E-12 | ||
| Pfam | 18 | 56 | 39 | 2.6E-7 | ||
| SMART | 22 | 62 | 41 | 0.0035 | ||
| SUPERFAMILY | 53 | 336 | 284 | 7.26E-8 | – | |
| Pfam | 175 | 199 | 25 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0173700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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