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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0173800 |
| Transcript ID | LotjaGi2g1v0173800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0173800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59128225..59130268) extracted from Lotus japonicus Gifu genome v1.2.
TACATTTTACTAATCCTTTGGTGGACTGATCCACTTGCTTCGTGCTTCATCGCGGCCAAGGTTTTCACCTTCTCCTTCTC TGGTTGGTTAGTTCATGTTTTCATTTAAGTTTTTATTCCAATCAATGTCTGAATTTAATTTTTGGATTTTTTGATTGACA TGTATGAGTTTCCAAGGAGTGATTTTTCTAGGATATGATTTCTTTTGTGGTAGAAATATGTTATAGTGCAGAGGGGTTAT TTGATTAGGTGTTTATTTTTGTTTTCCTAGGTTAGTATGGATTTGCAGTGTTGCTGTTATGCTTTTTCAGTGAATTGAGA GCAGGACCATGTTATTTTTCCTTTGTTAGGAAATTTGCATTATCTAGGAAGAATGGAGGATTTGATTAGCAGCTTACCGG AGGCACTCATATGTCACATACTCTCTTTTCTCTCAACCAAGCAAGCCGTTGCTACAAGCGTTCTCTCGAAGCGGTGGATG CCTCTATGGCGTTCAGTACCCACTCTGGACTTCAATGATTTCGACTATTATCTGATAAGCAATAAGACTTATTATCGTTT TGTTCAGTCTGTGTCTGCAGTTATCCTTGCCAGAGATTTCAACCAACCCATCCAAAAATTCAACTTCAGATATAGCTGTC CTCATTTTTATGAGCTTCCGGTTATTACCGCTGTCAACATATGGGTTAATGCTGCTGTGCAACTCAAAGTTCAGCACATC CATCTCTCCTTCAACTTACCCTCCCTTGTTCCACTTAAACCACCCGCCAACTTGTCTTCCTTCTTCAGTTGCAAAACTCT CATGGTTCTCACGTTGCAGGGTATCCAGTTTACTAATCCGTTTTCCTCAGTCGATCTTCCGGTTCTTAAAGTCCTGCATC TACAAGATTTGGGTTTCCCAGGACGCGCAAGTTTCGCTGAGCTTCTTTCTGGGTGTCCAATTCTTGAGGATTTTAAAACA AATCGTTTATATTTTAATGAAGGTTCCATTGACACAGAGTTTAAAACCTTACCCAAGTTGCTCAGAGCACATATTGCTGC GGAAAGTGATTTTTTTTTGCTGGGAGTGGTTAACAATGTGGAGTTTTTGCAGATAGATGATGTAATGTAATTTATAAATC ATTCTTTTTATTCCTAAGTGAAATGAGATATTTGATTTCTTGTTATTGACTTATTGTAACTCTTGCAGATTCATTGTAGT CTTGGTGATGGCACAAGCCCGTACGTTTTCCCCATGTTCCACAATTTGACCCATATTAAACTTGTCTACAGCAATTATAA TAATAATTGGGCTGAAGTTGTGGAATTGCTCAAGTATTGCCCCAAGCTTCAAGTTCTTGTCATTGACCAGGTTTGATTAG AGGCTTTAGGGTGATTTCTATTTTTTTATTTTGTCACTTCACATGTTTTCATTTATTTATTTTGTGTTTTTTTTGTTAAC AGCCAGATGTTCATTTTAGTGGGATAGATGAATTCAAAGAAGAAGTAGGTGTTTGGCAATACCCACCATGTGTTCCTGAA TGCATTCTACTACACCTTAAAAGATGTTGTCTAAATGGTTTTATAGGCACCAAAGGCGAGTTTGAGTTTGCAAGGTATAT AATGCAGAAGGCAAGATTTTTACAGAGGATGACAATATCCACTGGCATGGACAAAAATCAATGGGGAAAGCTTGAGCTGT TAAAAAAATTCTACTTATGCACGAGGGGCTCTGCAACTTGTAAATTTACCTTTAGCTGATAACAAACTAGATATGTTAGC TGCAAGTAGTTTTTCATTTTTTCACTTAAATTTTTAATTAGTAGCTAGCTACAAGGATATGGATCTTGTCCAATGGTTAG ATCATGTGACTTTATATTTTAATCTTCACCATTAATGGTTTGATAAATGGTCAAGATTTACTCTTCTAATCTCTCACAAT ATATTTCTATGAATGTATCATGTTTATAAAGCCTGTTACATTTTTTTTACTTCTATCAGTAGTTGATATTATCCTCTAAT TTGCAATCAGATATATGAAATTTGTGGTGGATCAGGAATTTGTG
CDS sequence (LotjaGi2g1v0173800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATTTGATTAGCAGCTTACCGGAGGCACTCATATGTCACATACTCTCTTTTCTCTCAACCAAGCAAGCCGTTGC TACAAGCGTTCTCTCGAAGCGGTGGATGCCTCTATGGCGTTCAGTACCCACTCTGGACTTCAATGATTTCGACTATTATC TGATAAGCAATAAGACTTATTATCGTTTTGTTCAGTCTGTGTCTGCAGTTATCCTTGCCAGAGATTTCAACCAACCCATC CAAAAATTCAACTTCAGATATAGCTGTCCTCATTTTTATGAGCTTCCGGTTATTACCGCTGTCAACATATGGGTTAATGC TGCTGTGCAACTCAAAGTTCAGCACATCCATCTCTCCTTCAACTTACCCTCCCTTGTTCCACTTAAACCACCCGCCAACT TGTCTTCCTTCTTCAGTTGCAAAACTCTCATGGTTCTCACGTTGCAGGGTATCCAGTTTACTAATCCGTTTTCCTCAGTC GATCTTCCGGTTCTTAAAGTCCTGCATCTACAAGATTTGGGTTTCCCAGGACGCGCAAGTTTCGCTGAGCTTCTTTCTGG GTGTCCAATTCTTGAGGATTTTAAAACAAATCGTTTATATTTTAATGAAGGTTCCATTGACACAGAGTTTAAAACCTTAC CCAAGTTGCTCAGAGCACATATTGCTGCGGAAAGTGATTTTTTTTTGCTGGGAGTGGTTAACAATGTGGAGTTTTTGCAG ATAGATGATATTCATTGTAGTCTTGGTGATGGCACAAGCCCGTACGTTTTCCCCATGTTCCACAATTTGACCCATATTAA ACTTGTCTACAGCAATTATAATAATAATTGGGCTGAAGTTGTGGAATTGCTCAAGTATTGCCCCAAGCTTCAAGTTCTTG TCATTGACCAGCCAGATGTTCATTTTAGTGGGATAGATGAATTCAAAGAAGAAGTAGGTGTTTGGCAATACCCACCATGT GTTCCTGAATGCATTCTACTACACCTTAAAAGATGTTGTCTAAATGGTTTTATAGGCACCAAAGGCGAGTTTGAGTTTGC AAGGTATATAATGCAGAAGGCAAGATTTTTACAGAGGATGACAATATCCACTGGCATGGACAAAAATCAATGGGGAAAGC TTGAGCTGTTAAAAAAATTCTACTTATGCACGAGGGGCTCTGCAACTTGTAAATTTACCTTTAGCTGA
Protein sequence (LotjaGi2g1v0173800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDLISSLPEALICHILSFLSTKQAVATSVLSKRWMPLWRSVPTLDFNDFDYYLISNKTYYRFVQSVSAVILARDFNQPI QKFNFRYSCPHFYELPVITAVNIWVNAAVQLKVQHIHLSFNLPSLVPLKPPANLSSFFSCKTLMVLTLQGIQFTNPFSSV DLPVLKVLHLQDLGFPGRASFAELLSGCPILEDFKTNRLYFNEGSIDTEFKTLPKLLRAHIAAESDFFLLGVVNNVEFLQ IDDIHCSLGDGTSPYVFPMFHNLTHIKLVYSNYNNNWAEVVELLKYCPKLQVLVIDQPDVHFSGIDEFKEEVGVWQYPPC VPECILLHLKRCCLNGFIGTKGEFEFARYIMQKARFLQRMTISTGMDKNQWGKLELLKKFYLCTRGSATCKFTFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 50 | 49 | 8.65 | ||
| PANTHER | 3 | 392 | 390 | 7.6E-69 | – | |
| SUPERFAMILY | 3 | 52 | 50 | 1.7E-11 | ||
| PANTHER | 3 | 392 | 390 | 7.6E-69 | – | |
| Pfam | 4 | 41 | 38 | 7.7E-7 | ||
| Gene3D | 4 | 316 | 313 | 7.6E-27 | ||
| SUPERFAMILY | 113 | 295 | 183 | 1.39E-11 | – | |
| Pfam | 165 | 189 | 25 | 8.3E-5 | ||
| Pfam | 320 | 362 | 43 | 1.1E-12 | ||
| SMART | 323 | 395 | 73 | 7.7E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0173800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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