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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0175800 |
| Transcript ID | LotjaGi2g1v0175800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT1G63750.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q9CAK1|RLM1B_ARATH Disease resistance protein RML1B; TrEMBL-Plants: tr|A0A151QNE4|A0A151QNE4_CAJCA TMV resistance protein N; Found in the gene: LotjaGi2g1v0175800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59435526..59438271) extracted from Lotus japonicus Gifu genome v1.2.
GCTTCCTTCTCTTCACACACTCTCCATCCATCAATTCAAACCGTATGAAACTTTCTTTACTCCACCCACTCTCTCGAAGC CTCCACCCTCTCAAACCCTCTTTCTCTCTCTCACTTCAAAGCTCAGACCACAACCGCCGTGCCCTTTCCTTTCCCAGATT CGAAACCGTCCCTTCCTTTCTCCACCTCCAACCCTGTCAACCCTCTTTCTTTCTTACGGACTCAATCGAAGCCCAGATCA TCCATGTAGCCATGTTCCTCTGAAACCCTCTCGTTCTCTCTCACTCTCAATCGAAGCCCATGCTGCTCTCTCTCGCTCTC TGTCGTTCACTCTCACTTTCAATCGAAGCCCATCGCGTTCTCTCGGCGTTCCTCTGTTCGCTTCTCAAAGGCTCAAAGGT TTGAAGGCAAACTCCAGATCGAGGCCCAAATCGAGCGTCCTCAAAGGTTAAGAGGACATGCAAGCCTCCAGATCGGAGAT CGGAGGTTTGAAGGCTCAAAGGTCGGCGGTAGCTGAATCAGAGGCTCAAAGGCTCATAGGTTCAGAGGAGATCCTCTCCA TTTTTGTGTAATTTTTTTGATTTGTTTAAAAAATGTGTATTTTAATTGTTTAATTTAATCTGTGTTCATCTCCCTTCCCC TTCTGTTGTTGAAATTTCTGAAATTTAAATCTCTTTTCTGGGTTTCCTTGTATTGTTGGATATGCTTGTTCATTGATCTG TTCTTCCCTCTTCTTTTAACGATTATTCTGTTGTTGCTGAATGGAAGAGAAAAAGCAATTTTTTAATGGCTGCAGCAAGT TAAGGAGCGTTGCTTAGCTATGAGCTGTTAGCAACGCCACCTCAGCAAGCTCCAATGGGGGAGAAAAATAAGGAACGCAG CTTAACTTAAGGAACCAGGTTAAGCAACCCCCATTGGAGTTGCTCTAAGGTTGACATAAAGGGTGAATCTTTGGCAAATA TGAAAAGACTTAGACTTCTCATGATCAGCAATGCACATGTTTCAGATGATATTCGATATCTGTCTAATGAGCTAAGGTTA ATTGATTGGCCAGGATACCCTTCTTCAACTCTACCACCAAACTTCCATCCAAAGAGGCTTATTTCTGTAAACTTGAGTTG TAGTTGTAGTCACATCAAACAGTTGTGGAAGGGTGCTAAGGTATGTTGTTTCTTTAAACTTGAGTTGTAGTCGCGTCAAA CACTTGTTGTTTAATAACATAGCTAACAGTCTTTGCTTTTTATTTTACTAATGATGCTTGTCCTCAGATATTCAAAGACT TGAAACTTGTATCCTTTAGCTGCTGTGAATACCTCACTGAAATTCTAGACTTCTCAATGATTCCAAACCTTGAAAGTCTC AGCCTAGACAACTGTAAAAGTTTAACCAAGGTGCATGAGTCTGTTGGGTCTCTTGATAAGCTTGTTACTTTGAACTTTCT ATTATGCTCCAATCTCAAGACTCTTCCGAGTCGTCTCAAGTTAAAATCTCTACGAACTCTCCTCCTTACTGGCTGCTCAA AGGTTAGAAAGTTTCCTGAGATTGTTGAGAAAATGGAACATCTTCACGAGATTCTTCTCCAAGGGACTGCAATTGAAGAA CTACCAAAGTCAATAGAATATCTGATTGGGCTAAAAGTCTTACTCTTGGATTCTTGCCAAAAGCTTGAGCATCTTCCCAG TAGCATTCAGAATTTGCAATACCTTACTGAACTTTGTCTCACTGGCTGCTCTAAGCTCCAGGAGCTTCCAAAGCTTCCAC TAAACACAAGATATATAGACACAAGTAATTGTAGATCATTGGAAAGGTTTCCAACATTATCCAGCCCATCAAATTTGAGT GCAGAGGAATTCCCAAGGTTTTCTCGAATGATGTTCATCAACTGCCGTAAACTAATTAATAAGCAAGTTCAAGACCACAT GACAAGTCTCTTTTACAATGAGGTCAGTGCTTCTCAAGATTGAACTATCTTAAAAGTTTAAGCTGTTGAGTAAAGAACAC TTGATGGTTTCTATCAGTGCTAAATGCTTGCTTGTGTTCCTCATGCAAAACATTTAGGGACTAAAGTTGATTTTAATGTT TCAGGAATCTACTGATGAAGTTATGCTTCCAGGGAGCAATGTCCCAGATTGGTTTCAACATCAGAGTACCAACGGTTCAA TTTCTCTTGATATAGCTTCAAAATTATATGGTAAGCATGTGGAGTTGTTTTTTTGTGCAGTTTTTGAGGTGGACAAAGGT GCTACTACCACTGGTATGTTTTCATGTATATATGAGGTGATCACCAATGATCAAAAGACACTTGCAATAGCCAGAAATTT TGAGTCACTTGAGTCAAGTCATGTATGGCCGACTAGGATAAAACCTGGTCGTTTGATGTGGCGCCTCAACGGTACGCATT ATTGGAATCACTTTGAGATTTCATTTGGGATATCTGAAGTGTCTTCAAAGGTGAAAGTAAAAGCATCCCTTAAAAGTTGT GGTTTCCATATTTCGTTCAATCAAGAAAGCTATCTGCTTGATCATGAATCAGTTAGGAGGTACACAGGGTGAAGTGGTGA ACGATATGCTATACCATATAGGTAATGCATAACAGAATGGATCATTAGTGACATTGTTATATTTTTAGGGTCTAACGTAT TTAATTTTTGTGAAGAGAGACAGACACAACATGACAAGTTTATGTAACATGAGCGGAGTCAATGTATGTCTAATTAAGCA TATGAGTAATAAAAGATTAACAAGGA
CDS sequence (LotjaGi2g1v0175800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGCCTCCAGATCGGAGATCGGAGGTTTGAAGGCTCAAAGGTCGGCGGTAGCTGAATCAGAGGCTCAAAGGCTCAT AGGATACCCTTCTTCAACTCTACCACCAAACTTCCATCCAAAGAGGCTTATTTCTGTAAACTTGAGTTGTAGTTGTAGTC ACATCAAACAGTTGTGGAAGGGTGCTAAGATATTCAAAGACTTGAAACTTGTATCCTTTAGCTGCTGTGAATACCTCACT GAAATTCTAGACTTCTCAATGATTCCAAACCTTGAAAGTCTCAGCCTAGACAACTGTAAAAGTTTAACCAAGGTGCATGA GTCTGTTGGGTCTCTTGATAAGCTTGTTACTTTGAACTTTCTATTATGCTCCAATCTCAAGACTCTTCCGAGTCGTCTCA AGTTAAAATCTCTACGAACTCTCCTCCTTACTGGCTGCTCAAAGGTTAGAAAGTTTCCTGAGATTGTTGAGAAAATGGAA CATCTTCACGAGATTCTTCTCCAAGGGACTGCAATTGAAGAACTACCAAAGTCAATAGAATATCTGATTGGGCTAAAAGT CTTACTCTTGGATTCTTGCCAAAAGCTTGAGCATCTTCCCAGTAGCATTCAGAATTTGCAATACCTTACTGAACTTTGTC TCACTGGCTGCTCTAAGCTCCAGGAGCTTCCAAAGCTTCCACTAAACACAAGATATATAGACACAAGTAATTGTAGATCA TTGGAAAGGTTTCCAACATTATCCAGCCCATCAAATTTGAGTGCAGAGGAATTCCCAAGGTTTTCTCGAATGATGTTCAT CAACTGCCGTAAACTAATTAATAAGCAAGTTCAAGACCACATGACAAGTCTCTTTTACAATGAGGAATCTACTGATGAAG TTATGCTTCCAGGGAGCAATGTCCCAGATTGGTTTCAACATCAGAGTACCAACGGTTCAATTTCTCTTGATATAGCTTCA AAATTATATGGTAAGCATGTGGAGTTGTTTTTTTGTGCAGTTTTTGAGGTGGACAAAGGTGCTACTACCACTGGTATGTT TTCATGTATATATGAGGTGATCACCAATGATCAAAAGACACTTGCAATAGCCAGAAATTTTGAGTCACTTGAGTCAAGTC ATGTATGGCCGACTAGGATAAAACCTGGTCGTTTGATGTGGCGCCTCAACGGTACGCATTATTGGAATCACTTTGAGATT TCATTTGGGATATCTGAAGTGTCTTCAAAGGTGAAAGTAAAAGCATCCCTTAAAAGTTGTGGTTTCCATATTTCGTTCAA TCAAGAAAGCTATCTGCTTGATCATGAATCAGTTAGGAGGTACACAGGGTGA
Protein sequence (LotjaGi2g1v0175800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQASRSEIGGLKAQRSAVAESEAQRLIGYPSSTLPPNFHPKRLISVNLSCSCSHIKQLWKGAKIFKDLKLVSFSCCEYLT EILDFSMIPNLESLSLDNCKSLTKVHESVGSLDKLVTLNFLLCSNLKTLPSRLKLKSLRTLLLTGCSKVRKFPEIVEKME HLHEILLQGTAIEELPKSIEYLIGLKVLLLDSCQKLEHLPSSIQNLQYLTELCLTGCSKLQELPKLPLNTRYIDTSNCRS LERFPTLSSPSNLSAEEFPRFSRMMFINCRKLINKQVQDHMTSLFYNEESTDEVMLPGSNVPDWFQHQSTNGSISLDIAS KLYGKHVELFFCAVFEVDKGATTTGMFSCIYEVITNDQKTLAIARNFESLESSHVWPTRIKPGRLMWRLNGTHYWNHFEI SFGISEVSSKVKVKASLKSCGFHISFNQESYLLDHESVRRYTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 25 | 121 | 97 | 2.2E-5 | ||
| SUPERFAMILY | 26 | 242 | 217 | 2.83E-28 | – | |
| PANTHER | 31 | 222 | 192 | 2.7E-67 | – | |
| PANTHER | 31 | 222 | 192 | 2.7E-67 | – | |
| Gene3D | 133 | 290 | 158 | 4.0E-20 | ||
| PANTHER | 217 | 429 | 213 | 2.7E-67 | – | |
| PANTHER | 217 | 429 | 213 | 2.7E-67 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0175800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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