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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0179200 |
| Transcript ID | LotjaGi2g1v0179200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Yellow stripe-like transporter 12; TAIR: AT1G48370.1 YELLOW STRIPE like 8; Swiss-Prot: sp|Q6R3K4|YSL8_ARATH Probable metal-nicotianamine transporter YSL8; TrEMBL-Plants: tr|G7KKB8|G7KKB8_MEDTR OPT family oligopeptide transporter; Found in the gene: LotjaGi2g1v0179200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60088059..60092992) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCCAAAACGGGAATCAAGACAGGGTAATGGTGGAAAACACTGATGATTATGATCATCACCACCATGACCACAATGA CCATGACCATGCAAGTGGTGATGAACATGAAGAGAAGCTGAAAGGGAAGAAGAAAGAAGAAGAACCTTCTGTGGAGAGGG TGTTCCAGCACCTGCTTGTTCCTTCATGGAGGAACCAGCTGACAGTGAGAGCTTTTGTGGTCAGCTTTGCACTCAGCATA CTGTTCAGTTTCATTGTCATGAAGCTCAACCTCACCACTGGAATCATTCCTTCACTCAATGTCTCTGCTGGACTTCTGGG ATTTTTCTTTGTGAAGACTTGGACCAAGTTCTTGGAGAGGTCTGGGTGGTTGAAGCAGCCTTTTACTAGGCAGGAGAACA CTGTCATCCAGACCTGTGTTGTTGCCTCCTCTGGCATAGCCTTTAGTGGTAACCTTATCTTACCTTCTCTGTTTCATTAC TCTCTGTCTTTCTCAATCTTAAATGTCCCTATTGCTATGTTTTTTTCAGTGGTTACTGTTACCCTTTTTTTTGGTTCATG GGTTTAAATTTGATCTGTGACTGATTATAGCATGTTTCGATCAACTTATTTTTCATCAGAATCAATTCTGGCACCTAGAA GCTACTCAGAAGGTTCTCCACATAATTAATTTTGAGTTTAGACTCGATTGTAGAAGGATTTTTAAACATGCTAGTTATCT GCTAGCATGCTTCTTATATTTGAAATTGACATGAAGTTTTGAACAATTTGATTTTTGGCACTGTTTGAGATTCTCTAGGA TGCTAAATTGCAAGGGATATGATATGGGTTTGAGCAAAAGCATGGTTTCTAGTGTTGAATTTGACTCTGAATATGACTCA TCCCAAAGAAAAACAAATCATTTTCTCCTGTTCAATCATTTATAGGATAAATTTCAACAGAGAAATTCTTAGTAATACAC TAATACCAGCACAAAGATGTTAACATTGGAATGATGAGTGTGTTTGAATTTTTATTAGCAAGACTAATAGCATATTTGGA AATCCTTGTAGAATTGATTCTACAAGCAAAATCAATTGTACGGAGAAGCTACGGTGAGTAGCTTTTAGGTGTCAGAATTG ATTATGAGAGAAAATAACCAGATCTAAACTTGCTAAGTTGCTATTAAAAGCACTTTTAATTGCAATTCATGTCTCACAAC AGATTTAAGTAAAATTGCAGTTTGATCTCATGAATGTATCAGAAATCCAAATCATAGAAACAAGATTTTGCCACATTGAG TTCAACGGAAATTTTAACACACGCTTATATAACTACTGGAGTGGTTCATCTTAGTGATATGGGAAATAGTTTTACTCAGG GTTGTTAATGGCGGATAGCGTAGTGTAGCGGCAAACCCAAAAAACGCTATTTCAAGCGCTATTGCGGCGCTATAGTGCCA AATAGCTGTGAATAGTGGAGTAGCGGTGAACCCCTAGGGCGCTACACTATAGGCTATTGCGTCGCTATAGCGCGCTATTA ACAAGCCTGGTTTACTAGGATTGGATTCTCTTTATCTTATTCTAGTTTCCAAATTTTAAAGTCAACTCCCACTGTTTGAA AAGTTTGGAGGAAACTTGCTGGCTGGATGATATCACTATCTTTAGCTATCAAAGGTTACTTGCTAGTTGCTACTTTTCAC TATCAATCACTGCCTACATGATAATGAACCTATAAATAGCAACAGGAGAAGAGCTGAAAAGTCACCCATTTCATCCTGTC TTGAAAGATGCAGCAGCTTTTGTTTTCAAACTTCAACTCATACCAGCAAATTTGGAAAATTTTGGGCTGTATTAATTATT AGAAAAAATGTCCCAAGGCAGGAAGCATAGAAGCCAAATCAAACTAATTTTTCAGTATTAATAGTGAAAATGACTGTTTA TAAGTCAATGTATTATTATTTGAACTTCAGCAACAGTTGGAAATTAATTTAATATCGCTTTCTCTTTTACTTTTCGCATG ACATTGAATAAGAAGTTGATGTCTTTTATCAACTTCATCAGGTAAAGTTTTTATTGTTTTTTTTTTTGTTTTTTTGGTGC TGAGCTAAAGTTTCAATTTACTTTTTCTTATCTCATAATTACTTTTTTACAAGATAATCTGTTTTGTATCATTTGAATGT ATTGTATCTCACCTTGAAATGAAACTGTTTAATCTTGCTGAAATTTATGTCATAGTAATTTAAGAAAATTGGAATTTTAG AAAGGAAACTCTAGAATGAGATTTTGATGTTATAGATGTGAAAGGAAACCTAAGCTGGTTATGATCAAGAAACAGTTTTT TATTGATGTCATGATGATTGACTCACTTAAATGAAAATTTTCTTGTCATGACAGGAGGATTTGGGAGTTACCTCTTTGCA ATGAGTGAGCATGTAGCCAAGCAATCCTCAGACACCAGTGATTTTAAGGACCCAAAATTAGGGTGGATCATTGCTTTTCT CTTTGTTGTTAGCTTTCTTGGCCTCTTCTCAGTTGTACCTCTAAGAAAGGTAATGACACATTCTTGAAATATTGATACTG CAGTATCCATAAATGAATATATTATTAATTTAGAAAACTTGATGATGCTTAAATCAACTTTTCTTTTTACAGACTCAGTT TTGGCACTTAGAAGCTACTCACAAAAGCTTCTCTCCATAATTGATTTTGGCTTCAGATTCAATCGAATCATAGAATCATT TTTTTCGCATTTTTCAGTCTTGGAAAATCATTGCAGAAACTTATTTTTAAGTAATAAAATGATTTATCTTTACTGCTTTA CCTCTAGAAATTATTTATCAGTATCCCTTGCCATGCAACAGTCTTTGATTAATTTTTTGCTTCTGCTATTGGATGTAGAT TATGGTCATAAAATTCAAATTGACATATCCAAGTGGTACTGCAACTGCACATCTCATCAACAGCTTCCACACTCCTCAAG GAGCCAAACTAGCAAAGTGAGCCCTATATAGCAGACTCCATGCAAAGTGAGTGCATGAGGAGTTAGACATCCATCATGCT AATTTACTGTTTCTTTTCTACTCTTCCAGGAAGCAGGTGAGAGTGTTGGGAAAATTCTTTGGATTGAGCTTCTTCTGGGG TTTCTTTCAATGGTTCTACACTGCTTCTGATTCTTGTGGATTTCAAGCCTTTCCCTCACTGGGGCTCAAAGCATTTGAAA ACAGGTATGTTACCTGTCTTCTCTTATCACATCACATCCTTCATTTTAAATCAAATTTATGTGTCCTAAGATATAACATA ATAAAAAACATTAACAAAATTTATCCCACTAAGTGAAGTCGGCTATATGAATCACATGATCCATGTTGAAAATACATCCA GTTTAACATTGGCTGCCGCAAGCCTAACACACCATTCCACCTTTATCTGGGCTTAGGACTGACTTTGACACAGCATATGC GGATTTTATCCTAATATAAAAACGTGCATTAATCTGATTGCAAGATACTTGAGATTAGTCCAGTTCTAATTTGTAAGTGT TAATCTAATCTTGACTTATTTGCAGGTTTTATTTTGATTTTGCTGCACTCTATGTTGGAGTGGGAATGATTTGCCCATAT ATCATAAATATATCAGTGCTCCTTGGAGGAATTCTTTCTTGGGGAGTAATGTGGCCTCTCATAGAAAATCAAGAGGGTCA CTGGTATGATAAGGGCCTCGGTGACGGTAGCCTTCATGGAATCCAAGGATATAGGGTAAGTTTCCTGATGCAAAGCACCT ATAGAGTCACATTATTTTGCATAGTTTCTAAGGTATATCAATTAATTGGATTCACCTTACATCTTAAGTTCAGGTATTTA TAGCCATAGCCATGATCCTGGGTGACGGTTTATACAACTTCGTAAAGGTGCTAACTCATACCTTAATGGGTTTGTATTAT CAAATCAAGGAGAAACATAGGGAGAATGTTCTTCCGGTCGCTGATCACGATTCTCCCTCGAGTCAGCTAACTTACGATGA CCAGCGCCGCCAGCAATTCTTTCTTAAAGATCAGATTCCCCCATGGTTTGCAGTTGGAGGCTATGTTGCTATTGCTGCTA TCTCAACCGCCACTCTGCCACACCTTTTTCCCCAGCTAAAATGGTATTACATACTAGTTATCTACCTAGTTGCTCCCACC TTAGCATTCTGCAATGCTTATGGTTGCGGGCTAACAGACTGGTCCCTAGCATCCACCTATGGAAAGCTCGCCATCTTCAC AATCGGAGCGTGGGCCGGTGCATCACACGGTGGAGTTCTTGCTAGCCTTGCAGCCTGTGGCGTGATGATGAACATCGTTT CCACCGCCTCTGACCTGATGCAGGACTTCAAGACCGGCTACCTTACGCTGTCTTCACCGCGCTCCATGTTTGTGAGCCAA ATACTTGGAACAGCTATGGGATGTGTGATTTCTCCTTGTGTCTTTTGGATTTTCTACAAGGCCTTTCCTGACCTTGGGAC ACATAAAAGTGAGTACCCTGCCCCATATGCGATTGTGTACCGCAACATGGCCATACTTGGGGTACAAGGCTTCAGTTCGC TACCGAAAAATTGCCTCATGCTATGTTATATATTCTTTGGTGCCGCCATTGTGATAAACTTGATTAAAGATTTAATGGGC AAGAGAGGGAGGTTCATACCACTTCCAATGGCTATGGCAATTCCTTTCTACATAGGGCCTTACTTTGCCATTGACATGTG TGTTGGAAGTTTGATATTATATGTCTGGGAAAAGGTTGACAAGGCTAAGGCAGATGCATTTGGACCAGCTGTAGCTTCTG GTTTGATATGTGGGGATGGAATATGGACACTTCCTGCTTCAGTACTTGCTCTTGTTGGAGTTAAGCCACCAATTTGCATG AGGTTCTTCTCAAGGGCCACAAATCAAAGGGTTGATACATTCTTAGGGAATTAA
CDS sequence (LotjaGi2g1v0179200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTGCCCATATATCATAAATATATCAGTGCTCCTTGGAGGAATTCTTTCTTGGGGAGTAATGTGGCCTCTCATAGA AAATCAAGAGGGTCACTGGTATGATAAGGGCCTCGGTGACGGTAGCCTTCATGGAATCCAAGGATATAGGGTATTTATAG CCATAGCCATGATCCTGGGTGACGGTTTATACAACTTCGTAAAGGTGCTAACTCATACCTTAATGGGTTTGTATTATCAA ATCAAGGAGAAACATAGGGAGAATGTTCTTCCGGTCGCTGATCACGATTCTCCCTCGAGTCAGCTAACTTACGATGACCA GCGCCGCCAGCAATTCTTTCTTAAAGATCAGATTCCCCCATGGTTTGCAGTTGGAGGCTATGTTGCTATTGCTGCTATCT CAACCGCCACTCTGCCACACCTTTTTCCCCAGCTAAAATGGTATTACATACTAGTTATCTACCTAGTTGCTCCCACCTTA GCATTCTGCAATGCTTATGGTTGCGGGCTAACAGACTGGTCCCTAGCATCCACCTATGGAAAGCTCGCCATCTTCACAAT CGGAGCGTGGGCCGGTGCATCACACGGTGGAGTTCTTGCTAGCCTTGCAGCCTGTGGCGTGATGATGAACATCGTTTCCA CCGCCTCTGACCTGATGCAGGACTTCAAGACCGGCTACCTTACGCTGTCTTCACCGCGCTCCATGTTTGTGAGCCAAATA CTTGGAACAGCTATGGGATGTGTGATTTCTCCTTGTGTCTTTTGGATTTTCTACAAGGCCTTTCCTGACCTTGGGACACA TAAAAGTGAGTACCCTGCCCCATATGCGATTGTGTACCGCAACATGGCCATACTTGGGGTACAAGGCTTCAGTTCGCTAC CGAAAAATTGCCTCATGCTATGTTATATATTCTTTGGTGCCGCCATTGTGATAAACTTGATTAAAGATTTAATGGGCAAG AGAGGGAGGTTCATACCACTTCCAATGGCTATGGCAATTCCTTTCTACATAGGGCCTTACTTTGCCATTGACATGTGTGT TGGAAGTTTGATATTATATGTCTGGGAAAAGGTTGACAAGGCTAAGGCAGATGCATTTGGACCAGCTGTAGCTTCTGGTT TGATATGTGGGGATGGAATATGGACACTTCCTGCTTCAGTACTTGCTCTTGTTGGAGTTAAGCCACCAATTTGCATGAGG TTCTTCTCAAGGGCCACAAATCAAAGGGTTGATACATTCTTAGGGAATTAA
Protein sequence (LotjaGi2g1v0179200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MICPYIINISVLLGGILSWGVMWPLIENQEGHWYDKGLGDGSLHGIQGYRVFIAIAMILGDGLYNFVKVLTHTLMGLYYQ IKEKHRENVLPVADHDSPSSQLTYDDQRRQQFFLKDQIPPWFAVGGYVAIAAISTATLPHLFPQLKWYYILVIYLVAPTL AFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGVLASLAACGVMMNIVSTASDLMQDFKTGYLTLSSPRSMFVSQI LGTAMGCVISPCVFWIFYKAFPDLGTHKSEYPAPYAIVYRNMAILGVQGFSSLPKNCLMLCYIFFGAAIVINLIKDLMGK RGRFIPLPMAMAIPFYIGPYFAIDMCVGSLILYVWEKVDKAKADAFGPAVASGLICGDGIWTLPASVLALVGVKPPICMR FFSRATNQRVDTFLGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 389 | 389 | 5.5E-74 | ||
| PANTHER | 1 | 412 | 412 | 6.7E-253 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Pfam | 1 | 388 | 388 | 5.6E-93 | ||
| PANTHER | 1 | 412 | 412 | 6.7E-253 | – | |
| Phobius | 5 | 26 | 22 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 27 | 45 | 19 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| Phobius | 46 | 67 | 22 | - | – | |
| Phobius | 68 | 117 | 50 | - | – | |
| TMHMM | 118 | 137 | 20 | - | – | |
| Phobius | 118 | 141 | 24 | - | – | |
| Phobius | 142 | 146 | 5 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 147 | 166 | 20 | - | – | |
| Phobius | 167 | 172 | 6 | - | – | |
| Phobius | 173 | 191 | 19 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 192 | 196 | 5 | - | – | |
| Phobius | 197 | 215 | 19 | - | – | |
| Phobius | 216 | 235 | 20 | - | – | |
| TMHMM | 236 | 258 | 23 | - | – | |
| Phobius | 236 | 258 | 23 | - | – | |
| Phobius | 259 | 292 | 34 | - | – | |
| TMHMM | 289 | 311 | 23 | - | – | |
| Phobius | 293 | 314 | 22 | - | – | |
| Phobius | 315 | 334 | 20 | - | – | |
| TMHMM | 331 | 353 | 23 | - | – | |
| Phobius | 335 | 355 | 21 | - | – | |
| Phobius | 356 | 366 | 11 | - | – | |
| Phobius | 367 | 393 | 27 | - | – | |
| Phobius | 394 | 416 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0179200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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