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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0179200 |
| Transcript ID | LotjaGi2g1v0179200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Yellow stripe-like transporter 12; TAIR: AT1G65730.1 YELLOW STRIPE like 7; Swiss-Prot: sp|Q9SHY2|YSL7_ARATH Probable metal-nicotianamine transporter YSL7; TrEMBL-Plants: tr|I1MQH0|I1MQH0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0179200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60088089..60092992) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGAAAACACTGATGATTATGATCATCACCACCATGACCACAATGACCATGACCATGCAAGTGGTGATGAACATGA AGAGAAGCTGAAAGGGAAGAAGAAAGAAGAAGAACCTTCTGTGGAGAGGGTGTTCCAGCACCTGCTTGTTCCTTCATGGA GGAACCAGCTGACAGTGAGAGCTTTTGTGGTCAGCTTTGCACTCAGCATACTGTTCAGTTTCATTGTCATGAAGCTCAAC CTCACCACTGGAATCATTCCTTCACTCAATGTCTCTGCTGGACTTCTGGGATTTTTCTTTGTGAAGACTTGGACCAAGTT CTTGGAGAGGTCTGGGTGGTTGAAGCAGCCTTTTACTAGGCAGGAGAACACTGTCATCCAGACCTGTGTTGTTGCCTCCT CTGGCATAGCCTTTAGTGGTAACCTTATCTTACCTTCTCTGTTTCATTACTCTCTGTCTTTCTCAATCTTAAATGTCCCT ATTGCTATGTTTTTTTCAGTGGTTACTGTTACCCTTTTTTTTGGTTCATGGGTTTAAATTTGATCTGTGACTGATTATAG CATGTTTCGATCAACTTATTTTTCATCAGAATCAATTCTGGCACCTAGAAGCTACTCAGAAGGTTCTCCACATAATTAAT TTTGAGTTTAGACTCGATTGTAGAAGGATTTTTAAACATGCTAGTTATCTGCTAGCATGCTTCTTATATTTGAAATTGAC ATGAAGTTTTGAACAATTTGATTTTTGGCACTGTTTGAGATTCTCTAGGATGCTAAATTGCAAGGGATATGATATGGGTT TGAGCAAAAGCATGGTTTCTAGTGTTGAATTTGACTCTGAATATGACTCATCCCAAAGAAAAACAAATCATTTTCTCCTG TTCAATCATTTATAGGATAAATTTCAACAGAGAAATTCTTAGTAATACACTAATACCAGCACAAAGATGTTAACATTGGA ATGATGAGTGTGTTTGAATTTTTATTAGCAAGACTAATAGCATATTTGGAAATCCTTGTAGAATTGATTCTACAAGCAAA ATCAATTGTACGGAGAAGCTACGGTGAGTAGCTTTTAGGTGTCAGAATTGATTATGAGAGAAAATAACCAGATCTAAACT TGCTAAGTTGCTATTAAAAGCACTTTTAATTGCAATTCATGTCTCACAACAGATTTAAGTAAAATTGCAGTTTGATCTCA TGAATGTATCAGAAATCCAAATCATAGAAACAAGATTTTGCCACATTGAGTTCAACGGAAATTTTAACACACGCTTATAT AACTACTGGAGTGGTTCATCTTAGTGATATGGGAAATAGTTTTACTCAGGGTTGTTAATGGCGGATAGCGTAGTGTAGCG GCAAACCCAAAAAACGCTATTTCAAGCGCTATTGCGGCGCTATAGTGCCAAATAGCTGTGAATAGTGGAGTAGCGGTGAA CCCCTAGGGCGCTACACTATAGGCTATTGCGTCGCTATAGCGCGCTATTAACAAGCCTGGTTTACTAGGATTGGATTCTC TTTATCTTATTCTAGTTTCCAAATTTTAAAGTCAACTCCCACTGTTTGAAAAGTTTGGAGGAAACTTGCTGGCTGGATGA TATCACTATCTTTAGCTATCAAAGGTTACTTGCTAGTTGCTACTTTTCACTATCAATCACTGCCTACATGATAATGAACC TATAAATAGCAACAGGAGAAGAGCTGAAAAGTCACCCATTTCATCCTGTCTTGAAAGATGCAGCAGCTTTTGTTTTCAAA CTTCAACTCATACCAGCAAATTTGGAAAATTTTGGGCTGTATTAATTATTAGAAAAAATGTCCCAAGGCAGGAAGCATAG AAGCCAAATCAAACTAATTTTTCAGTATTAATAGTGAAAATGACTGTTTATAAGTCAATGTATTATTATTTGAACTTCAG CAACAGTTGGAAATTAATTTAATATCGCTTTCTCTTTTACTTTTCGCATGACATTGAATAAGAAGTTGATGTCTTTTATC AACTTCATCAGGTAAAGTTTTTATTGTTTTTTTTTTTGTTTTTTTGGTGCTGAGCTAAAGTTTCAATTTACTTTTTCTTA TCTCATAATTACTTTTTTACAAGATAATCTGTTTTGTATCATTTGAATGTATTGTATCTCACCTTGAAATGAAACTGTTT AATCTTGCTGAAATTTATGTCATAGTAATTTAAGAAAATTGGAATTTTAGAAAGGAAACTCTAGAATGAGATTTTGATGT TATAGATGTGAAAGGAAACCTAAGCTGGTTATGATCAAGAAACAGTTTTTTATTGATGTCATGATGATTGACTCACTTAA ATGAAAATTTTCTTGTCATGACAGGAGGATTTGGGAGTTACCTCTTTGCAATGAGTGAGCATGTAGCCAAGCAATCCTCA GACACCAGTGATTTTAAGGACCCAAAATTAGGGTGGATCATTGCTTTTCTCTTTGTTGTTAGCTTTCTTGGCCTCTTCTC AGTTGTACCTCTAAGAAAGGTAATGACACATTCTTGAAATATTGATACTGCAGTATCCATAAATGAATATATTATTAATT TAGAAAACTTGATGATGCTTAAATCAACTTTTCTTTTTACAGACTCAGTTTTGGCACTTAGAAGCTACTCACAAAAGCTT CTCTCCATAATTGATTTTGGCTTCAGATTCAATCGAATCATAGAATCATTTTTTTCGCATTTTTCAGTCTTGGAAAATCA TTGCAGAAACTTATTTTTAAGTAATAAAATGATTTATCTTTACTGCTTTACCTCTAGAAATTATTTATCAGTATCCCTTG CCATGCAACAGTCTTTGATTAATTTTTTGCTTCTGCTATTGGATGTAGATTATGGTCATAAAATTCAAATTGACATATCC AAGTGGTACTGCAACTGCACATCTCATCAACAGCTTCCACACTCCTCAAGGAGCCAAACTAGCAAAGTGAGCCCTATATA GCAGACTCCATGCAAAGTGAGTGCATGAGGAGTTAGACATCCATCATGCTAATTTACTGTTTCTTTTCTACTCTTCCAGG AAGCAGGTGAGAGTGTTGGGAAAATTCTTTGGATTGAGCTTCTTCTGGGGTTTCTTTCAATGGTTCTACACTGCTTCTGA TTCTTGTGGATTTCAAGCCTTTCCCTCACTGGGGCTCAAAGCATTTGAAAACAGGTATGTTACCTGTCTTCTCTTATCAC ATCACATCCTTCATTTTAAATCAAATTTATGTGTCCTAAGATATAACATAATAAAAAACATTAACAAAATTTATCCCACT AAGTGAAGTCGGCTATATGAATCACATGATCCATGTTGAAAATACATCCAGTTTAACATTGGCTGCCGCAAGCCTAACAC ACCATTCCACCTTTATCTGGGCTTAGGACTGACTTTGACACAGCATATGCGGATTTTATCCTAATATAAAAACGTGCATT AATCTGATTGCAAGATACTTGAGATTAGTCCAGTTCTAATTTGTAAGTGTTAATCTAATCTTGACTTATTTGCAGGTTTT ATTTTGATTTTGCTGCACTCTATGTTGGAGTGGGAATGATTTGCCCATATATCATAAATATATCAGTGCTCCTTGGAGGA ATTCTTTCTTGGGGAGTAATGTGGCCTCTCATAGAAAATCAAGAGGGTCACTGGTATGATAAGGGCCTCGGTGACGGTAG CCTTCATGGAATCCAAGGATATAGGGTAAGTTTCCTGATGCAAAGCACCTATAGAGTCACATTATTTTGCATAGTTTCTA AGGTATATCAATTAATTGGATTCACCTTACATCTTAAGTTCAGGTATTTATAGCCATAGCCATGATCCTGGGTGACGGTT TATACAACTTCGTAAAGGTGCTAACTCATACCTTAATGGGTTTGTATTATCAAATCAAGGAGAAACATAGGGAGAATGTT CTTCCGGTCGCTGATCACGATTCTCCCTCGAGTCAGCTAACTTACGATGACCAGCGCCGCCAGCAATTCTTTCTTAAAGA TCAGATTCCCCCATGGTTTGCAGTTGGAGGCTATGTTGCTATTGCTGCTATCTCAACCGCCACTCTGCCACACCTTTTTC CCCAGCTAAAATGGTATTACATACTAGTTATCTACCTAGTTGCTCCCACCTTAGCATTCTGCAATGCTTATGGTTGCGGG CTAACAGACTGGTCCCTAGCATCCACCTATGGAAAGCTCGCCATCTTCACAATCGGAGCGTGGGCCGGTGCATCACACGG TGGAGTTCTTGCTAGCCTTGCAGCCTGTGGCGTGATGATGAACATCGTTTCCACCGCCTCTGACCTGATGCAGGACTTCA AGACCGGCTACCTTACGCTGTCTTCACCGCGCTCCATGTTTGTGAGCCAAATACTTGGAACAGCTATGGGATGTGTGATT TCTCCTTGTGTCTTTTGGATTTTCTACAAGGCCTTTCCTGACCTTGGGACACATAAAAGTGAGTACCCTGCCCCATATGC GATTGTGTACCGCAACATGGCCATACTTGGGGTACAAGGCTTCAGTTCGCTACCGAAAAATTGCCTCATGCTATGTTATA TATTCTTTGGTGCCGCCATTGTGATAAACTTGATTAAAGATTTAATGGGCAAGAGAGGGAGGTTCATACCACTTCCAATG GCTATGGCAATTCCTTTCTACATAGGGCCTTACTTTGCCATTGACATGTGTGTTGGAAGTTTGATATTATATGTCTGGGA AAAGGTTGACAAGGCTAAGGCAGATGCATTTGGACCAGCTGTAGCTTCTGGTTTGATATGTGGGGATGGAATATGGACAC TTCCTGCTTCAGTACTTGCTCTTGTTGGAGTTAAGCCACCAATTTGCATGAGGTTCTTCTCAAGGGCCACAAATCAAAGG GTTGATACATTCTTAGGGAATTAA
CDS sequence (LotjaGi2g1v0179200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAAAACACTGATGATTATGATCATCACCACCATGACCACAATGACCATGACCATGCAAGTGGTGATGAACATGA AGAGAAGCTGAAAGGGAAGAAGAAAGAAGAAGAACCTTCTGTGGAGAGGGTGTTCCAGCACCTGCTTGTTCCTTCATGGA GGAACCAGCTGACAGTGAGAGCTTTTGTGGTCAGCTTTGCACTCAGCATACTGTTCAGTTTCATTGTCATGAAGCTCAAC CTCACCACTGGAATCATTCCTTCACTCAATGTCTCTGCTGGACTTCTGGGATTTTTCTTTGTGAAGACTTGGACCAAGTT CTTGGAGAGGTCTGGGTGGTTGAAGCAGCCTTTTACTAGGCAGGAGAACACTGTCATCCAGACCTGTGTTGTTGCCTCCT CTGGCATAGCCTTTAGTGGAGGATTTGGGAGTTACCTCTTTGCAATGAGTGAGCATGTAGCCAAGCAATCCTCAGACACC AGTGATTTTAAGGACCCAAAATTAGGGTGGATCATTGCTTTTCTCTTTGTTGTTAGCTTTCTTGGCCTCTTCTCAGTTGT ACCTCTAAGAAAGATTATGGTCATAAAATTCAAATTGACATATCCAAGTGGTACTGCAACTGCACATCTCATCAACAGCT TCCACACTCCTCAAGGAGCCAAACTAGCAAAGAAGCAGGTGAGAGTGTTGGGAAAATTCTTTGGATTGAGCTTCTTCTGG GGTTTCTTTCAATGGTTCTACACTGCTTCTGATTCTTGTGGATTTCAAGCCTTTCCCTCACTGGGGCTCAAAGCATTTGA AAACAGGTTTTATTTTGATTTTGCTGCACTCTATGTTGGAGTGGGAATGATTTGCCCATATATCATAAATATATCAGTGC TCCTTGGAGGAATTCTTTCTTGGGGAGTAATGTGGCCTCTCATAGAAAATCAAGAGGGTCACTGGTATGATAAGGGCCTC GGTGACGGTAGCCTTCATGGAATCCAAGGATATAGGGTATTTATAGCCATAGCCATGATCCTGGGTGACGGTTTATACAA CTTCGTAAAGGTGCTAACTCATACCTTAATGGGTTTGTATTATCAAATCAAGGAGAAACATAGGGAGAATGTTCTTCCGG TCGCTGATCACGATTCTCCCTCGAGTCAGCTAACTTACGATGACCAGCGCCGCCAGCAATTCTTTCTTAAAGATCAGATT CCCCCATGGTTTGCAGTTGGAGGCTATGTTGCTATTGCTGCTATCTCAACCGCCACTCTGCCACACCTTTTTCCCCAGCT AAAATGGTATTACATACTAGTTATCTACCTAGTTGCTCCCACCTTAGCATTCTGCAATGCTTATGGTTGCGGGCTAACAG ACTGGTCCCTAGCATCCACCTATGGAAAGCTCGCCATCTTCACAATCGGAGCGTGGGCCGATTTAATGGGCAAGAGAGGG AGGTTCATACCACTTCCAATGGCTATGGCAATTCCTTTCTACATAGGGCCTTACTTTGCCATTGACATGTGTGTTGGAAG TTTGATATTATATGTCTGGGAAAAGGTTGACAAGGCTAAGGCAGATGCATTTGGACCAGCTGTAGCTTCTGGTTTGATAT GTGGGGATGGAATATGGACACTTCCTGCTTCAGTACTTGCTCTTGTTGGAGTTAAGCCACCAATTTGCATGAGGTTCTTC TCAAGGGCCACAAATCAAAGGGTTGATACATTCTTAGGGAATTAA
Protein sequence (LotjaGi2g1v0179200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVENTDDYDHHHHDHNDHDHASGDEHEEKLKGKKKEEEPSVERVFQHLLVPSWRNQLTVRAFVVSFALSILFSFIVMKLN LTTGIIPSLNVSAGLLGFFFVKTWTKFLERSGWLKQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFAMSEHVAKQSSDT SDFKDPKLGWIIAFLFVVSFLGLFSVVPLRKIMVIKFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRVLGKFFGLSFFW GFFQWFYTASDSCGFQAFPSLGLKAFENRFYFDFAALYVGVGMICPYIINISVLLGGILSWGVMWPLIENQEGHWYDKGL GDGSLHGIQGYRVFIAIAMILGDGLYNFVKVLTHTLMGLYYQIKEKHRENVLPVADHDSPSSQLTYDDQRRQQFFLKDQI PPWFAVGGYVAIAAISTATLPHLFPQLKWYYILVIYLVAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWADLMGKRG RFIPLPMAMAIPFYIGPYFAIDMCVGSLILYVWEKVDKAKADAFGPAVASGLICGDGIWTLPASVLALVGVKPPICMRFF SRATNQRVDTFLGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 38 | 38 | - | – | |
| Phobius | 1 | 56 | 56 | - | – | |
| PANTHER | 8 | 474 | 467 | 0.0 | – | |
| PANTHER | 8 | 474 | 467 | 0.0 | – | |
| TIGRFAM | 55 | 472 | 418 | 1.1E-64 | ||
| Pfam | 56 | 473 | 418 | 1.3E-98 | ||
| Phobius | 57 | 79 | 23 | - | – | |
| TMHMM | 57 | 76 | 20 | - | – | |
| Phobius | 80 | 84 | 5 | - | – | |
| Phobius | 85 | 104 | 20 | - | – | |
| TMHMM | 86 | 108 | 23 | - | – | |
| Phobius | 105 | 124 | 20 | - | – | |
| Phobius | 125 | 148 | 24 | - | – | |
| TMHMM | 129 | 148 | 20 | - | – | |
| Phobius | 149 | 167 | 19 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 168 | 189 | 22 | - | – | |
| Phobius | 190 | 228 | 39 | - | – | |
| TMHMM | 229 | 248 | 20 | - | – | |
| Phobius | 229 | 247 | 19 | - | – | |
| Phobius | 248 | 274 | 27 | - | – | |
| TMHMM | 270 | 289 | 20 | - | – | |
| Phobius | 275 | 308 | 34 | - | – | |
| TMHMM | 291 | 308 | 18 | - | – | |
| Phobius | 309 | 328 | 20 | - | – | |
| TMHMM | 328 | 350 | 23 | - | – | |
| Phobius | 329 | 349 | 21 | - | – | |
| Phobius | 350 | 402 | 53 | - | – | |
| TMHMM | 400 | 420 | 21 | - | – | |
| Phobius | 403 | 423 | 21 | - | – | |
| Phobius | 424 | 429 | 6 | - | – | |
| Phobius | 430 | 449 | 20 | - | – | |
| TMHMM | 430 | 452 | 23 | - | – | |
| Phobius | 450 | 454 | 5 | - | – | |
| Phobius | 455 | 475 | 21 | - | – | |
| TMHMM | 457 | 476 | 20 | - | – | |
| PANTHER | 474 | 570 | 97 | 0.0 | – | |
| PANTHER | 474 | 570 | 97 | 0.0 | – | |
| Phobius | 476 | 486 | 11 | - | – | |
| Pfam | 479 | 546 | 68 | 2.2E-14 | ||
| Phobius | 487 | 513 | 27 | - | – | |
| TMHMM | 491 | 513 | 23 | - | – | |
| Phobius | 514 | 524 | 11 | - | – | |
| Phobius | 525 | 551 | 27 | - | – | |
| Phobius | 552 | 574 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0179200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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