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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0179200 |
| Transcript ID | LotjaGi2g1v0179200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Yellow stripe-like transporter 12; TAIR: AT1G48370.1 YELLOW STRIPE like 8; Swiss-Prot: sp|Q6R3K4|YSL8_ARATH Probable metal-nicotianamine transporter YSL8; TrEMBL-Plants: tr|G7KKB8|G7KKB8_MEDTR OPT family oligopeptide transporter; Found in the gene: LotjaGi2g1v0179200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60091892..60093247) extracted from Lotus japonicus Gifu genome v1.2.
GTATTTATAGCCATAGCCATGATCCTGGGTGACGGTTTATACAACTTCGTAAAGGTGCTAACTCATACCTTAATGGGTTT GTATTATCAAATCAAGGAGAAACATAGGGAGAATGTTCTTCCGGTCGCTGATCACGATTCTCCCTCGAGTCAGCTAACTT ACGATGACCAGCGCCGCCAGCAATTCTTTCTTAAAGATCAGATTCCCCCATGGTTTGCAGTTGGAGGCTATGTTGCTATT GCTGCTATCTCAACCGCCACTCTGCCACACCTTTTTCCCCAGCTAAAATGGTATTACATACTAGTTATCTACCTAGTTGC TCCCACCTTAGCATTCTGCAATGCTTATGGTTGCGGGCTAACAGACTGGTCCCTAGCATCCACCTATGGAAAGCTCGCCA TCTTCACAATCGGAGCGTGGGCCGGTGCATCACACGGTGGAGTTCTTGCTAGCCTTGCAGCCTGTGGCGTGATGATGAAC ATCGTTTCCACCGCCTCTGACCTGATGCAGGACTTCAAGACCGGCTACCTTACGCTGTCTTCACCGCGCTCCATGTTTGT GAGCCAAATACTTGGAACAGCTATGGGATGTGTGATTTCTCCTTGTGTCTTTTGGATTTTCTACAAGGCCTTTCCTGACC TTGGGACACATAAAAGTGAGTACCCTGCCCCATATGCGATTGTGTACCGCAACATGGCCATACTTGGGGTACAAGGCTTC AGTTCGCTACCGAAAAATTGCCTCATGCTATGTTATATATTCTTTGGTGCCGCCATTGTGATAAACTTGATTAAAGATTT AATGGGCAAGAGAGGGAGGTTCATACCACTTCCAATGGCTATGGCAATTCCTTTCTACATAGGGCCTTACTTTGCCATTG ACATGTGTGTTGGAAGTTTGATATTATATGTCTGGGAAAAGGTTGACAAGGCTAAGGCAGATGCATTTGGACCAGCTGTA GCTTCTGGTTTGATATGTGGGGATGGAATATGGACACTTCCTGCTTCAGTACTTGCTCTTGTTGGAGTTAAGCCACCAAT TTGCATGAGGTTCTTCTCAAGGGCCACAAATCAAAGGGTTGATACATTCTTAGGGAATTAAGGTCAAGTTTGGATTGGGT TTGTCAATCACACAAAATATGTTGGAGAGAGTGTTTACACGAGCGTGTTGCTAGCGTTCCTTGTCTTTTTAATATTTGAG AGCTGTTACTGCCTTGTAAATGTGTCAAACTTCACTTAAGTTTGCTCTTTTCAACTTCTTTAGCCACATAGTTGAACAAA ACCCAATGAAGAGAAGTATTAATGTATGTAATATATTAGATGTATGACAAAGAAAGTATATATCTGCATGATTGGA
CDS sequence (LotjaGi2g1v0179200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCTGGGTGACGGTTTATACAACTTCGTAAAGGTGCTAACTCATACCTTAATGGGTTTGTATTATCAAATCAAGGA GAAACATAGGGAGAATGTTCTTCCGGTCGCTGATCACGATTCTCCCTCGAGTCAGCTAACTTACGATGACCAGCGCCGCC AGCAATTCTTTCTTAAAGATCAGATTCCCCCATGGTTTGCAGTTGGAGGCTATGTTGCTATTGCTGCTATCTCAACCGCC ACTCTGCCACACCTTTTTCCCCAGCTAAAATGGTATTACATACTAGTTATCTACCTAGTTGCTCCCACCTTAGCATTCTG CAATGCTTATGGTTGCGGGCTAACAGACTGGTCCCTAGCATCCACCTATGGAAAGCTCGCCATCTTCACAATCGGAGCGT GGGCCGGTGCATCACACGGTGGAGTTCTTGCTAGCCTTGCAGCCTGTGGCGTGATGATGAACATCGTTTCCACCGCCTCT GACCTGATGCAGGACTTCAAGACCGGCTACCTTACGCTGTCTTCACCGCGCTCCATGTTTGTGAGCCAAATACTTGGAAC AGCTATGGGATGTGTGATTTCTCCTTGTGTCTTTTGGATTTTCTACAAGGCCTTTCCTGACCTTGGGACACATAAAAGTG AGTACCCTGCCCCATATGCGATTGTGTACCGCAACATGGCCATACTTGGGGTACAAGGCTTCAGTTCGCTACCGAAAAAT TGCCTCATGCTATGTTATATATTCTTTGGTGCCGCCATTGTGATAAACTTGATTAAAGATTTAATGGGCAAGAGAGGGAG GTTCATACCACTTCCAATGGCTATGGCAATTCCTTTCTACATAGGGCCTTACTTTGCCATTGACATGTGTGTTGGAAGTT TGATATTATATGTCTGGGAAAAGGTTGACAAGGCTAAGGCAGATGCATTTGGACCAGCTGTAGCTTCTGGTTTGATATGT GGGGATGGAATATGGACACTTCCTGCTTCAGTACTTGCTCTTGTTGGAGTTAAGCCACCAATTTGCATGAGGTTCTTCTC AAGGGCCACAAATCAAAGGGTTGATACATTCTTAGGGAATTAA
Protein sequence (LotjaGi2g1v0179200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILGDGLYNFVKVLTHTLMGLYYQIKEKHRENVLPVADHDSPSSQLTYDDQRRQQFFLKDQIPPWFAVGGYVAIAAISTA TLPHLFPQLKWYYILVIYLVAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGVLASLAACGVMMNIVSTAS DLMQDFKTGYLTLSSPRSMFVSQILGTAMGCVISPCVFWIFYKAFPDLGTHKSEYPAPYAIVYRNMAILGVQGFSSLPKN CLMLCYIFFGAAIVINLIKDLMGKRGRFIPLPMAMAIPFYIGPYFAIDMCVGSLILYVWEKVDKAKADAFGPAVASGLIC GDGIWTLPASVLALVGVKPPICMRFFSRATNQRVDTFLGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 332 | 332 | 1.4E-79 | ||
| PANTHER | 1 | 356 | 356 | 1.8E-218 | – | |
| PANTHER | 1 | 356 | 356 | 1.8E-218 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| TIGRFAM | 13 | 333 | 321 | 1.5E-63 | ||
| Phobius | 26 | 61 | 36 | - | – | |
| Phobius | 62 | 85 | 24 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 86 | 90 | 5 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 91 | 110 | 20 | - | – | |
| Phobius | 111 | 116 | 6 | - | – | |
| Phobius | 117 | 135 | 19 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 136 | 140 | 5 | - | – | |
| Phobius | 141 | 159 | 19 | - | – | |
| Phobius | 160 | 179 | 20 | - | – | |
| Phobius | 180 | 202 | 23 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 203 | 236 | 34 | - | – | |
| TMHMM | 236 | 258 | 23 | - | – | |
| Phobius | 237 | 258 | 22 | - | – | |
| Phobius | 259 | 278 | 20 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 279 | 299 | 21 | - | – | |
| Phobius | 300 | 310 | 11 | - | – | |
| Phobius | 311 | 337 | 27 | - | – | |
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 338 | 360 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0179200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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